PetscFE: Add Jacobian type argument to PetscFEIntegrateBdJacobian()

Plex: Add Fortran binding for DMPlexDistributeOverlap()

Merge branch 'ksagiyam/mark_boundary' into 'main'

Ksagiyam/mark boundary

See merge request petsc/petsc!7064

Merge remote-tracking branch 'origin/release'

DMPLEX: fix typo

DMPLEXSUBMESH: fix what appear to be bugs

plex: allow for marking boundary for overlap > 0

Merge branch 'baagaard/update-plex-ex5-fault-projection' into 'main'

Fixes for projection between different dimensional meshes

See merge request petsc/petsc!7079

Plex ex5: Include tests projecting to fault mesh - Fix bd projection label and label completion

Plex: Fix boundary projection
- Update BdField projection kernel to take dmIn
- Compute neighboring cell geometry in projection if we are projecting on faces
- Get cohesive data during boundary pr

Plex: Fix boundary projection
- Update BdField projection kernel to take dmIn
- Compute neighboring cell geometry in projection if we are projecting on faces
- Get cohesive data during boundary projection
- Fix projection quadrature for cohesive fields

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Merge branch 'hdf5-1.14.0' into 'main'

HDF5 1.14.3

See merge request petsc/petsc!6116

Merge branch 'jed/libceed-i64-support' into 'main'

libceed: Add support for 64-bit indices

See merge request petsc/petsc!7076

libceed: Add support for 64-bit indices

drop support for MED files

Fix PetscOptionsGetViewer() so it works in a thread-safe way

When PetscOptionsGetViewer() returns, for example, PETSC_VIEWER_STDOUT_SELF the same object is shared
by all threads that call PetscOptio

Fix PetscOptionsGetViewer() so it works in a thread-safe way

When PetscOptionsGetViewer() returns, for example, PETSC_VIEWER_STDOUT_SELF the same object is shared
by all threads that call PetscOptionsGetViewer(). In the previous code PetscObjectReference() and
dereference (via PetscViewerDestroy() where called on the viewer by multiple threads after the viewer
was accessed thus corrupting the object.

This branch introduces a PetscOptionsRestoreViewer() that allows not doing the referencing and dereferencing
on persistant viewers, thus removing the specific race condition above.

Other possible solutions include

Use a lock on each PetscObjectReference/Dereference() just in case they are shared. Could be time consuming so one
could mark each object as either threadshared or independent and only do the locks on threadshared objects. This lowers
the cost but would require more extensive changes to PETSc infrastructure. And I do not know if this shared/not shared model
is what we need in the long run, though it might be.

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Add a few PetscCheck() that function input arguments rstart and rend are non-decreasing

plex: apply noop change to tests/ex3

Merge remote-tracking branch 'origin/release'

Fix some manual pages focusing on SNES

Plex+GMsh: Allow some optional sections from Neper

Replace some guarded PetscCheck() to PetscAssert()

Plex: Fix DMPlexGetSimplexOrBoxCells() to work with meshes of mixed cell type

Merge remote-tracking branch 'origin/release'

Plex: Fix affine transforms for quad faces

Merge branch 'barry/2023-10-19/fix-pcview-redundant/release' into 'main'

Fix bugs in handling PetscViewerGetSubViewer() and tabing in ASCII viewers

See merge request petsc/petsc!6948