PC: Fixed propagation of DM by PCCOMPOSITEReported-by: Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk>
updated PETSc directory layout to match standard packaging strategiesinclude/petsc finclude,private,mpiunilib/petsc confbin/petsc*
simplify option object names
moved PetscOptionsObject from global variable to local variable in functions
manual merge of conflict
incorrect manual page name hence incorrect fortran stub generated
added a variety of getters and fixed calling sequence of a few setters
MatGetVecs() and KSPGetVecs() replaced with MatCreateVecs() and KSPCreateVecs()since they are creators not getters
Merge branch 'barry/rm-matstructure-mat-pointer'Conflicts: include/petsctao.h
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner
KSPSetOperators() no longer has the MatStructure argument. The Mat objects now track that information themselves. Use KPS/PCSetReusePreconditioner() to prevent the recomputation of the preconditioner if the operator changed in the way that SAME_PRECONDITIONER did with KSPSetOperators()SNES/TS still need to be cleaned up to better utilize the new interfaces
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PCComposite: comment multiplicative case to show matrix expression
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e 's@PetscNew\([^,;()]+ *, *@PetscNew(@;s@PetscNewLog\(([^,;()]+) *,[^,
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e 's@PetscNew\([^,;()]+ *, *@PetscNew(@;s@PetscNewLog\(([^,;()]+) *,[^,;()]+, *@PetscNewLog($1,@'
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
Merged PCBJacobiSetUseTrueLocal(), -pc_bjacobi_true_local, PCKSPSetUseTrue(), -pc_ksp_true, PCCompositeSetUseTrue() -pc_composite_true to PCSetUserAmat(), -pc_use_amat.Hg-commit: 28c28f0c8c27af7553
Merged PCBJacobiSetUseTrueLocal(), -pc_bjacobi_true_local, PCKSPSetUseTrue(), -pc_ksp_true, PCCompositeSetUseTrue() -pc_composite_true to PCSetUserAmat(), -pc_use_amat.Hg-commit: 28c28f0c8c27af7553d524c69009ff509f6495ce
Change all PETSC_EXTERN_C to PETSC_EXTERNHg-commit: 8d2ebbb193fb583bccc64015e35640c4e08c3426
finished all EXTERN_C_BEGIN/END fixes up through Mat including all fortran interface filesHg-commit: a763120ba50023930be975663a3f80c58e415743
completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructorstested with and without dynamic with and without C++Hg-commit: 7d27d7f4d9ea3bfe
completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructorstested with and without dynamic with and without C++Hg-commit: 7d27d7f4d9ea3bfe6616fafdfb32d046b5db53a1
began removing extern "C" wrappers for functions passed to PetscObjectComposeFunction() and making appropriate ones staticHg-commit: eef29051d7c47680850b22cd953238719c6b75fc
changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETScPetscObjectComposeFunctionDynamic() is still availabl
changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETScPetscObjectComposeFunctionDynamic() is still available for use if neededalso fixed calls to PetscObjectComposeFunction() to not wrap lines (per PETSc coding style)Hg-commit: 822f9ddaac95a8ff6c2a9ad77fbf07d02d2c20d9
added PetscObjectComm() and used it to replace (((PetscObject)obj)->comm)Hg-commit: 3da37c458124ad48ae939f4e9823e4430ee0b8be
removed PETSC_NULL from C and Fortran (except declaration in C for backward compatibility). Kept PETSC_NULL_xxx for FortranFixed a few bugs where PETSC_NULL had been used incorrectly.Hg-commit: 05
removed PETSC_NULL from C and Fortran (except declaration in C for backward compatibility). Kept PETSC_NULL_xxx for FortranFixed a few bugs where PETSC_NULL had been used incorrectly.Hg-commit: 054705a517d7f4388a8a084415d7478cbe95dff4
Uncrustified src/ksp/pc/*Hg-commit: b80b33e3b1d8943a898b18384bc7b2c1a3103a32
Reformatted: "Do not put a blank line immediately before PetscFunctionReturn;"Hg-commit: c8a41c455986e732d0ea0513d7162a54daffaece
Reformatted: "There should be a blank line before PetscFunctionBegin;"Hg-commit: 05bda4416aaceb2dbd9d85b5720629adc88eef98
generally SETERRQXX does not belong on its own linealso fixed formatting issues in dgmres.c (ugh)Hg-commit: e3fffdf67cd55655a36785a0abc7c197e98ca7cd
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