Manual merge since I removed hypre euclid and stefno added amsMerge branch 'stefano_zampini/hypre-ams' into barry/experimentConflicts: include/petscpc.h src/ksp/pc/impls/hypre/hypre.c
simplify option object names
added --with-threadsafety flagother cleanup for threadsafetyremoved Euclid due to bit rot
fixed hypre code to work with non-global object version of PetscOptionsBegin()
moved PetscOptionsObject from global variable to local variable in functions
manual merge of conflict
Merge branch 'barry/fix-options-default'Conflicts: src/ksp/ksp/examples/tutorials/ex52.c
update use of PetscOptionsBool() to not rely on default setting automatically
PCHYPRE: need to cal setdimension otherwise hypre AMS solver will assume dim=3
MatGetVecs() and KSPGetVecs() replaced with MatCreateVecs() and KSPCreateVecs()since they are creators not getters
PCHYPRE: added interface to auxiliary space Maxwell solver AMSInterface is under testing.Some specific functions could be namespaced to AMS
completed some percentage of changes from %G format in prints
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e 's@PetscNew\([^,;()]+ *, *@PetscNew(@;s@PetscNewLog\(([^,;()]+) *,[^,
Sys: drop explicit type arguments from PetscNew() and PetscNewLog()git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e 's@PetscNew\([^,;()]+ *, *@PetscNew(@;s@PetscNewLog\(([^,;()]+) *,[^,;()]+, *@PetscNewLog($1,@'
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Sys: add PetscMalloc1 macro, array allocation without redundant typesThe type is inferred from the pointer return type. This patch isautomated via the following script:git grep -l 'PetscMalloc(
Sys: add PetscMalloc1 macro, array allocation without redundant typesThe type is inferred from the pointer return type. This patch isautomated via the following script:git grep -l 'PetscMalloc(.*sizeof' src | xargs perl -pi -e 's@PetscMalloc\(([^,;]*[^,; ]) *\* *sizeof\([^,;()]+\),@PetscMalloc1($1,@'This commit contains an additional bug-fix in csrperm.c, fixing pointerarity. The code was introduced in 2006, but the allocation could nothave been correct at any time. This probably means thatMatDuplicate_SeqAIJPERM has never been tested. a54129beb540034ba105796c682d589e7e1111f2 Richard Tran Mills <rmills@ornl.gov> Added MATSEQCSRPERM support for MatDuplicate() and conversion to/from MATSEQAIJ. Note that these changes are not quite debugged.
since external packages use a variety of different types for 64 bit indices(though all have the same bit values) casts are needed for some compilers toprevent warning messages when using 64 bit ind
since external packages use a variety of different types for 64 bit indices(though all have the same bit values) casts are needed for some compilers toprevent warning messages when using 64 bit indices
Merge branch 'barry/citations'
PCHypre: fix spelling
completed initial implementation of PetscCitationsRegister() and added proper cites for hypre, ml, mumps
-citations option causes the print out of approriate bibtex citation indices for all packages USED in the runMost of the appropriate citations still need to be added
removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()
Change all PETSC_EXTERN_C to PETSC_EXTERNHg-commit: 8d2ebbb193fb583bccc64015e35640c4e08c3426
finished all EXTERN_C_BEGIN/END fixes up through Mat including all fortran interface filesHg-commit: a763120ba50023930be975663a3f80c58e415743
completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructorstested with and without dynamic with and without C++Hg-commit: 7d27d7f4d9ea3bfe
completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructorstested with and without dynamic with and without C++Hg-commit: 7d27d7f4d9ea3bfe6616fafdfb32d046b5db53a1
began removing unneeded EXTERN_C_BEGIN/END and converting needed ones to PETSC_EXTERN_CHg-commit: e0c157606a3283d5a4ba8902a0da5cad0e2aa531
changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETScPetscObjectComposeFunctionDynamic() is still availabl
changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETScPetscObjectComposeFunctionDynamic() is still available for use if neededalso fixed calls to PetscObjectComposeFunction() to not wrap lines (per PETSc coding style)Hg-commit: 822f9ddaac95a8ff6c2a9ad77fbf07d02d2c20d9
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