Sys: drop explicit type arguments from PetscNew() and PetscNewLog()

git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e '
s@PetscNew\([^,;()]+ *, *@PetscNew(@;
s@PetscNewLog\(([^,;()]+) *,[^,

Sys: drop explicit type arguments from PetscNew() and PetscNewLog()

git grep -l 'PetscNew\(Log\)\?(' -- $1 | xargs perl -pi -e '
s@PetscNew\([^,;()]+ *, *@PetscNew(@;
s@PetscNewLog\(([^,;()]+) *,[^,;()]+, *@PetscNewLog($1,@'

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Sys: add PetscMalloc1 macro, array allocation without redundant types

The type is inferred from the pointer return type. This patch is
automated via the following script:

git grep -l 'PetscMalloc(

Sys: add PetscMalloc1 macro, array allocation without redundant types

The type is inferred from the pointer return type. This patch is
automated via the following script:

git grep -l 'PetscMalloc(.*sizeof' src | xargs perl -pi -e 's@PetscMalloc\(([^,;]*[^,; ]) *\* *sizeof\([^,;()]+\),@PetscMalloc1($1,@'

This commit contains an additional bug-fix in csrperm.c, fixing pointer
arity. The code was introduced in 2006, but the allocation could not
have been correct at any time. This probably means that
MatDuplicate_SeqAIJPERM has never been tested.

a54129beb540034ba105796c682d589e7e1111f2
Richard Tran Mills <rmills@ornl.gov>

Added MATSEQCSRPERM support for MatDuplicate() and conversion to/from
MATSEQAIJ. Note that these changes are not quite debugged.

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removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()

Change all PETSC_EXTERN_C to PETSC_EXTERN

Hg-commit: 8d2ebbb193fb583bccc64015e35640c4e08c3426

completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructors
tested with and without dynamic with and without C++

Hg-commit: 7d27d7f4d9ea3bfe

completed removing unneeded EXTERN_C_BEGIN/END from Mat directories and converting to PETSC_EXTERN_C for constructors
tested with and without dynamic with and without C++

Hg-commit: 7d27d7f4d9ea3bfe6616fafdfb32d046b5db53a1

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began removing unneeded EXTERN_C_BEGIN/END and converting needed ones to PETSC_EXTERN_C

Hg-commit: e0c157606a3283d5a4ba8902a0da5cad0e2aa531

changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETSc
PetscObjectComposeFunctionDynamic() is still availabl

changed use of PetscObjectComposeFunctionDynamic() to PetscObjectComposeFunction() to allow use of static for functions for standard use in PETSc
PetscObjectComposeFunctionDynamic() is still available for use if needed
also fixed calls to PetscObjectComposeFunction() to not wrap lines (per PETSc coding style)

Hg-commit: 822f9ddaac95a8ff6c2a9ad77fbf07d02d2c20d9

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