Merge branch 'balay/remove-cu-links' into 'maint'

use #include instead of soft links from .cu to .c files - as links are causing grief with mingw

See merge request petsc/petsc!2523

git grep -l "seperate" | xargs sed -i '' -e 's/seperate/separate/g'

Commit-type: spelling-fix
Reported-by: Pierre JOLIVET <Pierre.Jolivet@enseeiht.fr>

Typos+nonexistent functions+"Not yet cataloged"

use #include instead of soft links from .cu to .c files - as links are causing grief with mingw

Reported-by: Pierre Jolivet <pierre.jolivet@enseeiht.fr>

Fix more typos and add missing examples

Merge remote-tracking branch 'origin/maint'

PCView error with MUMPS, GAMG, and LMVM

Changed XXXPinToCPU() to XXXBindToCPU() to prevent confusion.

The reason for this change is that we already use the terminology
"pinned" to refer to memory that is non-pageable, in the context of
Pe

Changed XXXPinToCPU() to XXXBindToCPU() to prevent confusion.

The reason for this change is that we already use the terminology
"pinned" to refer to memory that is non-pageable, in the context of
PetscSF as well as allocating host memory when GPUs are being employed.

show more ...

Merge remote-tracking branch 'origin/maint'

Fix typos in doc

Merge branch 'barry/2019-12-01/nd-default-cholesky-icc-aij' into 'master'

Change the default behavior of PCCHOLESKY to use nested dissection...

See merge request petsc/petsc!2344

Merge remote-tracking branch 'origin/jed/pcgamg-threshold-doc'

PCGAMG Threshold: improve documentation and error handling

See merge request petsc/petsc!2458

Change the default behavior of PCCHOLESKY to use nested dissection ordering for AIJ matrices

Previously the defaults where hardwired to natural since SBAIJ only supports natural. But this meant that

Change the default behavior of PCCHOLESKY to use nested dissection ordering for AIJ matrices

Previously the defaults where hardwired to natural since SBAIJ only supports natural. But this meant that when run
with AIJ the default was low efficiency.

Commit-type: optimization
Reported-by: Ed Bueler <elbueler@alaska.edu>

show more ...

Small fixes for Fortran and SLEPc compilation

General PETSc fixes

* make generatefortranstubs.py handle .cxx
* bump HPDDM version + minor hypre cleaning

PCGAMG Threshold: improve documentation and error handling

This is kind of a mess of poor dependencies and error handling. We
normally pass array lengths before the array, but have it backwards
her

PCGAMG Threshold: improve documentation and error handling

This is kind of a mess of poor dependencies and error handling. We
normally pass array lengths before the array, but have it backwards
here (perhaps it should be changed, but it's a breaking change).

show more ...

Merge branch 'knepley/feature-dm-cell-types' into 'master'

Knepley/feature dm cell types

See merge request petsc/petsc!2446

Merge remote-tracking branch 'origin/maint'

DM+Plex: Now classify cells by polytope type
- Defined the polytope type of a cell. added names and special shortcut
pointer like depth - Fixed DMLabelMakeValid() to optimize for contiguous
runs of

DM+Plex: Now classify cells by polytope type
- Defined the polytope type of a cell. added names and special shortcut
pointer like depth - Fixed DMLabelMakeValid() to optimize for contiguous
runs of points - Added cell polytope type label to DM - This needs
special processing, like depth - Added DMPlexGetPointDepth(),
DMPlexGetCellType(), DMPlexGetCellTypeLabel() - DMPlexComputeCellTypes()
infers the cell type for all points using dim/depth/coneSize/ghostCells
- DMPlexGetRawFace(Hybrid)_Internal() now takes the cell type. This
means we can unify the functions later. - Replaced switch(dim/coneSize)
constructs with cell type

show more ...

Fixed a typo: "glabal" --> "global".

Merge remote-tracking branch 'origin/maint'

Documentation fixes

Double CHKERRQ

Missing manual page

Handle -ksp_reuse_preconditioner