MatTranspose_SeqAIJ: support missing value arrray for symbolic transposition

Add test

Merge branch 'jczhang/2024-03-18/check-conf-runtime-cuda-arches' into 'main'

Show configure/runtime cuda arch discrepancy in error messages; show runtime cuda arch in -log_view

See merge request pe

Merge branch 'jczhang/2024-03-18/check-conf-runtime-cuda-arches' into 'main'

Show configure/runtime cuda arch discrepancy in error messages; show runtime cuda arch in -log_view

See merge request petsc/petsc!7385

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Fortran: remove unneeded return

MatAIJCusparse: add PetscCallCXX() to catch thrust device errors

PCBDDC: support multi-element local matrices

StructOfArrays->ArrayOfStruct for BDDC graph node metadata
implement squaring of local graph
Implement customization loading to test Hdiv and Hcurl
Added

PCBDDC: support multi-element local matrices

StructOfArrays->ArrayOfStruct for BDDC graph node metadata
implement squaring of local graph
Implement customization loading to test Hdiv and Hcurl
Added tests

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Add MatMatSolveTranspose_SeqAIJ

Merge branch 'jolivet/feature-consolidate-issymmetric' into 'main'

Mat: consolidate MatIs[Symmetric|Hermitian]() implementations

See merge request petsc/petsc!7380

Add implementations for Mat{Forward,Backward}Solve for MKL_CPARDISO

Mat: consolidate MatIs[Symmetric|Hermitian]() implementations

Merge branch 'stefanozampini/firedrake-1' into 'main'

Updates for Firedrake: first batch

See merge request petsc/petsc!7358

Merge branch 'jczhang/2024-02-22/add-explicit-execution-space' into 'main'

Add explicit execution space (stream or queue) argument to Kokkos/KK functions

See merge request petsc/petsc!7315

asan fixes

minor fixes

Kokkos: add explicit execution space (stream or queue) to Kokkos/KK functions

Merge remote-tracking branch 'origin/release'

CUDA: add a workaround using thrust::get<id>(var) instead of var.get<id>() to access elements of a tuple

Otherwise, cuda-12.4.0 gives error: class "cuda::std::__4::tuple<PetscScalar, PetscScalar, Pe

CUDA: add a workaround using thrust::get<id>(var) instead of var.get<id>() to access elements of a tuple

Otherwise, cuda-12.4.0 gives error: class "cuda::std::__4::tuple<PetscScalar, PetscScalar, PetscScalar, PetscScalar>" has no member "get"

Reported-by: Jesse Madsen <jesse.madsen175@gmail.com>

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CI: update to clang-format-18

Remove some unneeded parentheses

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefan

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefano Zampini

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Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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checkbadSource: rules for PetscFunctionBegin and derivatives

Clarify which MatCreate and friends copies the user provided values

Reported-by: Fabian Wermelinger <fab4100@posteo.ch>

Fix -Wextra-semi-stmt

src/mat/impls/baij/mpi/mpibaij.c:2724:37: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
MatSeqXAIJGetO

Fix -Wextra-semi-stmt

src/mat/impls/baij/mpi/mpibaij.c:2724:37: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
MatSeqXAIJGetOptions_Private(b->B);
^
src/mat/impls/baij/mpi/mpibaij.c:2729:41: warning: empty expression statement has no effect; remove unnecessary ';' to silence this warning [-Wextra-semi-stmt]
MatSeqXAIJRestoreOptions_Private(b->B);

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Bug fix, calling MatXXXSetPreallocation on MPI matrices after MatSetOption() loses the option value

Reported-by: Francois Fraysse

Fix words appearing twice in a row for no good reason