baij - OpenGrok history log for /petsc/src/mat/impls/baij

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0bd2d507	16-Nov-2017	Jed Brown <jed@jedbrown.org>	Merge branch 'jed/fix-matcreatempibaij/maint' [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] MatCreateMPIBAIJWithArrays: Merge branch 'jed/fix-matcreatempibaij/maint' [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] MatCreateMPIBAIJWithArrays: fix MPISBAIJ -> MPIBAIJ [fix #195] show more ... /petsc/config/configure.py /petsc/config/examples/arch-pardiso.py /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/glvisviewerimpl.h /petsc/include/petscdm.h /petsc/include/petscdmplex.h /petsc/include/petscdmswarm.h /petsc/include/petscviewer.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tutorials/ex20.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/da/dalocal.c /petsc/src/dm/impls/da/grglvis.c /petsc/src/dm/impls/plex/examples/tests/ex19.c /petsc/src/dm/impls/plex/examples/tests/ex22.c /petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_1.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexfvm.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexglvis.c /petsc/src/dm/impls/plex/plexgmsh.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/impls/plex/plexorient.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/dm/impls/redundant/dmredundant.c /petsc/src/dm/impls/swarm/examples/makefile /petsc/src/dm/impls/swarm/examples/tests/ex1.c /petsc/src/dm/impls/swarm/examples/tests/makefile /petsc/src/dm/impls/swarm/examples/tests/output/ex1_proj_0.out /petsc/src/dm/impls/swarm/examples/tests/output/ex1_proj_1.out /petsc/src/dm/impls/swarm/examples/tests/output/ex1_proj_2.out /petsc/src/dm/impls/swarm/examples/tests/output/ex1_proj_3.out /petsc/src/dm/impls/swarm/swarm.c /petsc/src/dm/impls/swarm/swarmpic.c /petsc/src/dm/impls/swarm/swarmpic_plex.c /petsc/src/dm/impls/swarm/swarmpic_sort.c /petsc/src/dm/impls/swarm/swarmpic_view.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c mpi/mpibaij.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex21.c /petsc/src/snes/examples/tutorials/ex22.c /petsc/src/snes/examples/tutorials/ex28.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/output/ex62_2d_p3_0.out /petsc/src/snes/examples/tutorials/output/ex62_2d_p3_1.out /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/sys/classes/viewer/impls/glvis/glvis.c /petsc/src/sys/error/err.c /petsc/src/sys/objects/options.c /petsc/src/ts/examples/tutorials/ex14.c /petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/vec/utils/vecglvis.c
8b774067	16-Nov-2017	Jed Brown <jed@jedbrown.org>	Merge branch 'jed/fix-matcreatempibaij/maint' into maint [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] MatCreateMPIBAIJW Merge branch 'jed/fix-matcreatempibaij/maint' into maint [issue #195] * jed/fix-matcreatempibaij/maint: MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] MatCreateMPIBAIJWithArrays: fix MPISBAIJ -> MPIBAIJ [fix #195] show more ... /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/szlib.py /petsc/include/petscdm.h /petsc/include/petscsys.h /petsc/include/petscversion.h /petsc/src/dm/examples/tutorials/swarm_ex1.c /petsc/src/dm/examples/tutorials/swarm_ex3.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/plex/examples/tests/ex19.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/manual.tex /petsc/src/docs/website/download/index.html /petsc/src/ksp/ksp/examples/tests/ex54.c /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/examples/tests/output/ex54_1.out /petsc/src/ksp/ksp/examples/tests/output/ex54_1_alt.out /petsc/src/ksp/ksp/examples/tests/output/ex54_2.out /petsc/src/ksp/ksp/examples/tests/output/ex54_2_alt.out /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpiaij.h /petsc/src/mat/impls/aij/mpi/pastix/pastix.c mpi/mpibaij.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/mffd/mffdimpl.h /petsc/src/mat/interface/ftn-custom/zmatrixf.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tests/ex2.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex56_1.out /petsc/src/snes/interface/snes.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/snes/mf/snesmfj.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/error/err.c /petsc/src/sys/examples/tests/ex1f.F90 /petsc/src/sys/examples/tests/ex35.c /petsc/src/sys/examples/tests/makefile /petsc/src/sys/examples/tests/output/ex1f_1.out /petsc/src/sys/examples/tests/output/ex35_1.out /petsc/src/sys/logging/utils/classlog.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/options.c /petsc/src/sys/utils/sortd.c /petsc/src/tao/bound/examples/tutorials/jbearing2.c /petsc/src/tao/bound/examples/tutorials/makefile /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/ts/examples/tests/ex1.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/glee/glee.c /petsc/src/ts/impls/implicit/glle/glle.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/ts.c
27f91139	15-Nov-2017	Jed Brown <jed@jedbrown.org>	MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] This requirement that a matrix be preallocated (set up) before setting the MAT_ROW_ORIENTED option was added in v3.7. "Pri MatCreateMPIBAIJWithArrays: call MatSetUp before MatSetOption [fix #195] This requirement that a matrix be preallocated (set up) before setting the MAT_ROW_ORIENTED option was added in v3.7. "Print a better error when someone sets a MatOption that that matrix is not ready for yet." Reported-by: Marshall Galbraith show more ... mpi/mpibaij.c
e366c154	15-Nov-2017	Jed Brown <jed@jedbrown.org>	Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maint Obtain changed (v3.5) handling of MatMPIBAIJSetPreallocationCSR to match documentation. /petsc/.dir-locals.el /petsc/.gitignore /petsc/.hgignore /petsc/.hgtags /petsc/.mailmap /petsc/bin/TOPSGenerator.py /petsc/bin/TOPSInstaller.py /petsc/bin/adiforfix.py /petsc/bin/julia/PETSc.jl /petsc/bin/julia/examples/tutorials/exKSP.jl /petsc/bin/maint/asterix-test.sh /petsc/bin/maint/bk2darcs.py /petsc/bin/maint/bk2hg.py /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/buildtest.py /petsc/bin/maint/checkloc.py /petsc/bin/maint/confignightly/bb /petsc/bin/maint/confignightly/bb2 /petsc/bin/maint/confignightly/bb3 /petsc/bin/maint/confignightly/bb4 /petsc/bin/maint/confignightly/cg /petsc/bin/maint/confignightly/churn /petsc/bin/maint/confignightly/churn2 /petsc/bin/maint/confignightly/churn3 /petsc/bin/maint/confignightly/crank 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9a43d2d5	14-Nov-2017	Jed Brown <jed@jedbrown.org>	MatCreateMPIBAIJWithArrays: fix MPISBAIJ -> MPIBAIJ [fix #195] Reported-by: Marshall Galbraith mpi/mpibaij.c
579148ee	12-Nov-2017	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/jed/variadic-malloc' /petsc/.mailmap /petsc/bin/maint/runhtml.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/PETSc/Configure.py /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/private/f90impl.h /petsc/include/petsc/private/isimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petscdm.h /petsc/include/petscdmplex.h /petsc/include/petscksp.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscmath.h /petsc/include/petscsys.h /petsc/include/petsctao.h /petsc/include/petscts.h 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/petsc/src/sys/utils/mpiu.c /petsc/src/sys/utils/sortd.c /petsc/src/sys/utils/str.c /petsc/src/tao/bound/examples/tutorials/jbearing2.c /petsc/src/tao/bound/examples/tutorials/makefile /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/examples/tutorials/minsurf1.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/examples/tutorials/ex1.c /petsc/src/tao/examples/tutorials/ex2.c /petsc/src/tao/examples/tutorials/ex3.c /petsc/src/tao/interface/fdiff.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/interface/taosolver_fg.c /petsc/src/tao/interface/taosolver_hj.c /petsc/src/tao/leastsquares/impls/pounders/gqt.c /petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c /petsc/src/tao/unconstrained/examples/tutorials/makefile /petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c /petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_4.out /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c 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/petsc/src/ts/examples/tutorials/ex16opt_p.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/examples/tutorials/ex20opt_ic.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/ex45.c /petsc/src/ts/examples/tutorials/ex46.c /petsc/src/ts/examples/tutorials/ex47.c /petsc/src/ts/examples/tutorials/output/ex11_shock_0.out /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt_fwd.c /petsc/src/ts/examples/tutorials/power_grid/ex9opt.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt_fd.c /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/glee/glee.c /petsc/src/ts/impls/implicit/glle/glle.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/ts.c /petsc/src/ts/trajectory/impls/basic/trajbasic.c /petsc/src/ts/trajectory/interface/ftn-custom/makefile /petsc/src/ts/trajectory/interface/ftn-custom/ztrajf.c /petsc/src/ts/trajectory/interface/traj.c /petsc/src/vec/is/is/impls/f90-custom/zblockf90.c /petsc/src/vec/is/is/impls/stride/stride.c /petsc/src/vec/is/is/interface/f90-custom/zindexf90.c /petsc/src/vec/is/is/utils/f90-custom/ziscoloringf90.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/f90-custom/zisltogf90.c /petsc/src/vec/is/utils/f90-custom/zvsectionisf90.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/interface/f90-custom/zvectorf90.c /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/utils/f90-custom/zvsectionf90.c
c25d5741	31-Oct-2017	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/balay/fix-mkl-sparse/maint' into maint /petsc/.travis.yml /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py /petsc/include/petsc/finclude/petsc.h /petsc/include/petscmat.h /petsc/src/dm/examples/tests/ex34.c /petsc/src/dm/examples/tests/makefile /petsc/src/dm/examples/tests/output/ex34_1.out /petsc/src/docs/tex/manual/manual.tex /petsc/src/docs/tex/manual/manualpreamble.tex /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/ksp/pc/impls/mg/mg.c /petsc/src/mat/impls/aij/mpi/aijmkl/makefile /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aijmkl/makefile mpi/baijmkl/makefile seq/baijmkl/makefile /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matregis.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/sys/classes/draw/impls/image/drawimage.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/examples/tests/ex1.c /petsc/src/sys/examples/tests/output/ex1_1.out
2cd485c2	30-Oct-2017	Barry Smith <bsmith@mcs.anl.gov>	Simplify PetscFree() calls on const pointers; no longer require additional variables Commit-type: style-fix Thanks-to: Jed Brown <jed@jedbrown.org> /petsc/src/dm/impls/plex/plextree.c /petsc/src/mat/impls/aij/mpi/mpiov.c mpi/baijov.c /petsc/src/mat/impls/dense/mpi/mmdense.c /petsc/src/sys/utils/str.c
f489ac74	30-Oct-2017	Barry Smith <bsmith@mcs.anl.gov>	Fixes for use of PetscMallocN() with const type input Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function Commit-type: portability-fix, testing-fix Fixes for use of PetscMallocN() with const type input Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function Commit-type: portability-fix, testing-fix Reported-by: nightly tests show more ... /petsc/bin/PetscBinaryIO.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py /petsc/config/BuildSystem/config/setCompilers.py 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/petsc/src/mat/impls/aij/seq/makefile mpi/baijov.c /petsc/src/mat/impls/dense/mpi/mmdense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/elemental/matelem.cxx /petsc/src/mat/impls/maij/maij.c /petsc/src/mat/impls/shell/ftn-custom/zshellf.c /petsc/src/mat/impls/shell/shell.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matregis.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/ex13.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/ex69.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex46_fm_rise_4.out /petsc/src/snes/impls/ms/ms.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj.c /petsc/src/snes/linesearch/impls/cp/linesearchcp.c /petsc/src/sys/dll/reg.c /petsc/src/sys/fileio/sysio.c /petsc/src/sys/memory/mal.c /petsc/src/sys/mpiuni/mpi.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/objects/fcallback.c /petsc/src/sys/objects/init.c /petsc/src/sys/utils/sorti.c /petsc/src/sys/utils/str.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/examples/tutorials/ex1.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/examples/tutorials/ex45.c /petsc/src/ts/examples/tutorials/ex46.c /petsc/src/ts/examples/tutorials/ex47.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/makefile /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9bus_2_alt2.out /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/glee/glee.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/vec/is/is/impls/stride/stride.c /petsc/src/vec/is/sf/examples/tutorials/ex1.c /petsc/src/vec/is/sf/examples/tutorials/output/ex1_8.out /petsc/src/vec/is/sf/examples/tutorials/output/ex1_8_basic.out /petsc/src/vec/is/sf/impls/basic/sfbasic.c /petsc/src/vec/is/sf/impls/window/sfwindow.c /petsc/src/vec/is/sf/interface/dlregissf.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/sf/interface/sftype.c /petsc/src/vec/vec/examples/tutorials/ex10.c /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
9779e05d	23-Oct-2017	Satish Balay <balay@mcs.anl.gov>	mkl: add mkl_sparse.py as a separate package [as the interface code is organized this way] and use PETSC_HAVE_MKL_SPARSE to enable/disable this interface code [so that this flag represents functional mkl: add mkl_sparse.py as a separate package [as the interface code is organized this way] and use PETSC_HAVE_MKL_SPARSE to enable/disable this interface code [so that this flag represents functionality that is more than PETSC_HAVE_MKL flag]. Also disable mkl_sparse, mkl_sparse_optimize for 64-bit-incides Reported-by: Victor Eijkhout <eijkhout@tacc.utexas.edu> show more ... /petsc/.travis.yml /petsc/README.md /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/knl2 /petsc/bin/maint/update-docs.py /petsc/bin/maint/xclude /petsc/bin/petsc_gen_xdmf.py /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Random123.py /petsc/config/BuildSystem/config/packages/boost.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/pragmatic.py 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0f6d62ed	22-Oct-2017	Lisandro Dalcin <dalcinl@gmail.com>	MatConvert: Fix for {Seq\|MPI}BAIJ -> {Seq\|MPI}AIJ with MAT_REUSE_MATRIX /petsc/README.md /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/knl2 /petsc/bin/maint/update-docs.py /petsc/bin/maint/xclude /petsc/bin/petsc_gen_xdmf.py /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Random123.py /petsc/config/BuildSystem/config/packages/boost.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/config/examples/arch-linux-clang-avx.py /petsc/config/examples/arch-opensolaris-pkgs-opt.py 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80095d54	14-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Bug fixes Fix for test 107_2. To prevent MKL routine returning error in case when MatSetOption(mat,MAT_STRUCTURE_ONLY,PETSC_TRUE) is called. In this case matrix will be optimized before call to mkl_s Bug fixes Fix for test 107_2. To prevent MKL routine returning error in case when MatSetOption(mat,MAT_STRUCTURE_ONLY,PETSC_TRUE) is called. In this case matrix will be optimized before call to mkl_sparse_x_mv. The same problem will appear in AIJMKl case. Also added MatCreateBAIJMKL and MatCreateSeqBAIJMKL to external include to call them from examples show more ... /petsc/include/petscmat.h /petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c seq/baijmkl/baijmkl.c
017c2882	13-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Minor changes for better code style mpi/baijmkl/mpibaijmkl.c seq/baijmkl/baijmkl.c seq/baijmkl/baijmkl.h
71bc03e0	13-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Bug fix for MatDuplicate_SeqBAIJMKL Null pointer was passed to PetscMemcpy seq/baijmkl/baijmkl.c
4d6dccb5	12-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Bug fixes Assign function poiners on AssemblyEnd so they are not overridden in MatSeqBAIJSetPreallocation_SeqBAIJ() seq/baijmkl/baijmkl.c
b5b72c8a	11-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Added new matrix classes to include files Added define MKL_SUPPORTS_BAIJ_ZERO_BASED to suuport different versions of MKL (older verions support only one based indexing for column major blocks in baij Added new matrix classes to include files Added define MKL_SUPPORTS_BAIJ_ZERO_BASED to suuport different versions of MKL (older verions support only one based indexing for column major blocks in baij format) show more ... /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/include/petsc/finclude/petscmat.h /petsc/include/petscmat.h mpi/makefile mpi/mpibaij.h seq/baij.c seq/baij.h seq/makefile /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/interface/matregis.c
7072be85	11-Sep-2017	Irina Sokolova <irina.sokolova@intel.com>	Implementation of baijmkl class that supports mult and multadd operations using MKL Sparse BLAS IE. If used version of MKL does not support new API (version 11.3 and earlier) default PETSc kernels ar Implementation of baijmkl class that supports mult and multadd operations using MKL Sparse BLAS IE. 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b31f67cf	19-Aug-2017	Barry Smith <bsmith@mcs.anl.gov>	Error in MatAXPY_MPIBAIJ() array lengths not multiplied by bs*bs Commit-type: bug-fix Funded-by: ECP Time: 1 hours Reported-by: Stefano Zampini <stefano.zampini@gmail.com> /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/churn /petsc/bin/maint/confignightly/crank3 /petsc/bin/maint/confignightly/knl /petsc/bin/maint/confignightly/ps4 /petsc/bin/maint/confignightly/ps4-3 /petsc/bin/maint/confignightly/ps4-5 /petsc/bin/maint/confignightly/wii /petsc/bin/maint/confignightly/wii3 /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/mpfr.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/builder.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda-single.py /petsc/config/examples/arch-linux-knl.py 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86e85357	03-Aug-2017	Hong Zhang <hzhang@mcs.anl.gov>	for baij and dummy matrices /petsc/src/mat/impls/aij/seq/aij.c seq/baij.c seq/baij.h seq/baij2.c /petsc/src/mat/impls/dummy/matdummy.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/interface/matrix.c
f68bb481	03-Aug-2017	Hong Zhang <hzhang@mcs.anl.gov>	rename /petsc/.gitmessage /petsc/bin/maint/branches.py /petsc/bin/maint/builddist /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/el6 /petsc/bin/maint/exampleslog.py /petsc/bin/maint/htmltemplate.py /petsc/bin/maint/runhtml.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/eigen.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/languages.py /petsc/config/example_template.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py 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/petsc/src/vec/vec/examples/tests/makefile /petsc/src/vec/vec/examples/tutorials/makefile /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu /petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/f90-custom/makefile /petsc/src/vec/vec/utils/comb.c /petsc/src/vec/vec/utils/f90-custom/makefile /petsc/src/vec/vec/utils/makefile /petsc/src/vec/vec/utils/vecglvis.c
4f2f5d20	01-Jul-2017	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/barry/fix-kspnormtypes' /petsc/config/BuildSystem/config/compilers.py /petsc/config/gmakegentest.py /petsc/include/petsc/finclude/petscsys.h /petsc/include/petscksp.h /petsc/src/dm/examples/tutorials/ex11f90.F90 /petsc/src/dm/examples/tutorials/ex13f90.F90 /petsc/src/dm/impls/plex/examples/tests/ex1f90.F90 /petsc/src/dm/impls/plex/examples/tests/ex2f90.F90 /petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90 /petsc/src/dm/impls/plex/examples/tutorials/ex3f90.F90 /petsc/src/dm/impls/plex/examples/tutorials/ex4f90.F90 /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tests/ex16f.F90 /petsc/src/ksp/ksp/examples/tests/ex52f.F /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/examples/tutorials/ex13f90.F90 /petsc/src/ksp/ksp/examples/tutorials/ex1f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex22f.F /petsc/src/ksp/ksp/examples/tutorials/ex44f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex54f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex61f.F90 /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/impls/fetidp/fetidp.c /petsc/src/ksp/ksp/impls/preonly/preonly.c /petsc/src/mat/examples/tests/ex16f90.F90 /petsc/src/mat/examples/tests/ex196f90.F90 /petsc/src/mat/examples/tests/ex79f.F90 /petsc/src/mat/examples/tests/makefile /petsc/src/mat/impls/aij/mpi/mmaij.c /petsc/src/mat/impls/aij/seq/aij.c mpi/mmbaij.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/elemental/matelem.cxx /petsc/src/mat/impls/sbaij/seq/sbaij2.c /petsc/src/snes/examples/tests/ex18f90.F90 /petsc/src/snes/examples/tests/ex1f.F90 /petsc/src/snes/examples/tutorials/ex1f.F90 /petsc/src/snes/examples/tutorials/ex40f90.F90 /petsc/src/snes/examples/tutorials/ex5f.F90 /petsc/src/snes/examples/tutorials/ex5f90.F90 /petsc/src/snes/examples/tutorials/ex5f90t.F90 /petsc/src/snes/examples/tutorials/ex73f90t.F90 /petsc/src/snes/examples/tutorials/makefile /petsc/src/sys/classes/viewer/examples/tutorials/ex1f90.F90 /petsc/src/sys/error/err.c /petsc/src/sys/error/ftn-custom/zerrf.c /petsc/src/sys/examples/tests/ex13f.F90 /petsc/src/sys/examples/tests/ex1f.F90 /petsc/src/sys/examples/tests/output/ex1f_1.out /petsc/src/sys/examples/tutorials/ex10f90.F90 /petsc/src/sys/examples/tutorials/ex4f90.F90 /petsc/src/sys/examples/tutorials/ex5f90.F90 /petsc/src/sys/examples/tutorials/ex8f90.F90 /petsc/src/sys/f90-mod/petscerror.h /petsc/src/tao/bound/examples/tutorials/makefile /petsc/src/tao/bound/examples/tutorials/plate2f.F90 /petsc/src/tao/constrained/examples/tutorials/toyf.F /petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F90 /petsc/src/tao/leastsquares/examples/tutorials/chwirut2f.F90 /petsc/src/tao/leastsquares/examples/tutorials/makefile /petsc/src/tao/unconstrained/examples/tutorials/makefile /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F90 /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/shashi.F90 /petsc/src/ts/examples/tutorials/ex22f_mf.F90 /petsc/src/ts/examples/tutorials/ex45.c /petsc/src/vec/is/is/examples/tests/ex1f.F90 /petsc/src/vec/is/is/examples/tests/ex2f.F90 /petsc/src/vec/is/is/examples/tests/makefile /petsc/src/vec/is/is/examples/tutorials/ex1f90.F90 /petsc/src/vec/is/is/examples/tutorials/ex3f90.F90 /petsc/src/vec/vec/examples/tests/ex17f.F /petsc/src/vec/vec/examples/tests/ex40f90.F90 /petsc/src/vec/vec/examples/tutorials/ex14f.F90 /petsc/src/vec/vec/examples/tutorials/ex1f90.F90 /petsc/src/vec/vec/examples/tutorials/ex20f90.F90 /petsc/src/vec/vec/examples/tutorials/ex21f90.F90 /petsc/src/vec/vec/examples/tutorials/ex4f90.F90 /petsc/src/vec/vec/examples/tutorials/ex9f.F90 /petsc/src/vec/vec/examples/tutorials/makefile
cdc753b6	30-Jun-2017	Barry Smith <bsmith@mcs.anl.gov>	MatCopy implementations need to update the state since values have changed Commit-type: bug-fix Development Tools: Vim, Emacs, Eclipse /petsc/.gitignore /petsc/.gitmessage /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petscnagupgrade.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/mkl_cpardiso.py /petsc/config/BuildSystem/config/packages/mkl_pardiso.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/BuildSystem/config/packages/strumpack.py /petsc/config/BuildSystem/config/packages/sundials.py /petsc/config/BuildSystem/config/packages/tchem.py 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bca11509	29-Jun-2017	Barry Smith <bsmith@mcs.anl.gov>	Allow KSPPREONLY and KSPFETIDP to "support" any KSPNormType this prevents errors when the user has hardwired a particular KSPNormType that is not relevant for these methods. Also improved documenta Allow KSPPREONLY and KSPFETIDP to "support" any KSPNormType this prevents errors when the user has hardwired a particular KSPNormType that is not relevant for these methods. Also improved documentation regarding the fact that KSPPREONLY does use KSP convergence options and KSPFETIDP automatically copies options supplied to the outer KSP to the inner one. A few fixes for use of VecGetArrayRead() because Barry's work flow is terrible. These are unrelated to the previous updates. Commit-type: style-fix, feature, documentation Time: .4 hours Reported-by: Jed Brown <jed@jedbrown.org> show more ... /petsc/.gitignore /petsc/bin/petsc_gen_xdmf.py /petsc/bin/petscnagupgrade.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/mkl_cpardiso.py /petsc/config/BuildSystem/config/packages/mkl_pardiso.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/BuildSystem/config/packages/strumpack.py /petsc/config/BuildSystem/config/packages/sundials.py /petsc/config/BuildSystem/config/packages/tchem.py /petsc/config/BuildSystem/config/packages/viennacl.py /petsc/config/BuildSystem/config/programs.py 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6f67f266	25-May-2017	Hong Zhang <hzhang@mcs.anl.gov>	Merge branch 'hzhang/mat-structureonly' /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petscdm.h /petsc/include/petscdmplex.h /petsc/include/petscmat.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tests/ex5.c /petsc/src/dm/examples/tests/makefile /petsc/src/dm/examples/tests/output/ex5_1.out /petsc/src/dm/examples/tests/output/ex5_2.out /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/plex/makefile /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexply.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex5_asm.out /petsc/src/mat/examples/tests/ex107.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/examples/tests/output/ex107.out /petsc/src/mat/examples/tests/output/ex107_2.out /petsc/src/mat/f90-mod/petscmat.h /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aij.h seq/baij.c /petsc/src/mat/impls/is/matis.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/ex12.c
9d243f67	24-May-2017	Hong Zhang <hzhang@mcs.anl.gov>	initialize ap as complained by the nightly tests seq/baij.c
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