interface - OpenGrok history log for /petsc/src/mat/interface

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
1919a2e2	21-Oct-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'madams/mat-residual' into hzhang/snes-jacobiancoloropt Fix conflict between new MATOP_RESIDUAL and MATOP_FDCOLORING_SETUP. * madams/mat-residual: refactored residuals by adding a 'r Merge branch 'madams/mat-residual' into hzhang/snes-jacobiancoloropt Fix conflict between new MATOP_RESIDUAL and MATOP_FDCOLORING_SETUP. * madams/mat-residual: refactored residuals by adding a 'residual' method to Mat Conflicts: include/finclude/petscmat.h include/petsc-private/matimpl.h include/petscmat.h src/mat/impls/aij/mpi/mpiaij.c src/mat/impls/aij/seq/aij.c src/mat/impls/baij/mpi/mpibaij.c src/mat/impls/baij/seq/baij.c show more ... /petsc/include/finclude/petscmat.h /petsc/include/petsc-private/matimpl.h /petsc/include/petscmat.h /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/mat/impls/adj/mpi/mpiadj.c /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/fdaij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/blockmat/seq/blockmat.c /petsc/src/mat/impls/composite/mcomposite.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/impls/scatter/mscatter.c /petsc/src/mat/impls/shell/shell.c dlregismat.c ftn-custom/zmatrixf.c matrix.c
b6e74826	21-Oct-2013	Jed Brown <jedbrown@mcs.anl.gov>	Mat: non-square block support for MatSetValuesBlocked The old version always used row block size, which is incorrect for non-square blocks. Reported-by: Lawrence Mitchell <lawrence.mitchell@imperia Mat: non-square block support for MatSetValuesBlocked The old version always used row block size, which is incorrect for non-square blocks. Reported-by: Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk> show more ... /petsc/config/BuildSystem/config/libraries.py /petsc/config/PETSc/Configure.py /petsc/include/finclude/petscmat.h /petsc/include/petsc-private/matimpl.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/include/petscversion.h /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/interface/dm.c /petsc/src/docs/website/download/index.html /petsc/src/ksp/ksp/examples/tutorials/ex56.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex56_nns.out /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/factor/factimpl.c /petsc/src/ksp/pc/impls/factor/factor.c /petsc/src/ksp/pc/impls/factor/factor.h /petsc/src/ksp/pc/impls/factor/icc/icc.c /petsc/src/ksp/pc/impls/factor/ilu/ilu.c /petsc/src/ksp/pc/impls/gamg/agg.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/sbaij/seq/relax.h matrix.c /petsc/src/mat/utils/gcreate.c /petsc/src/mat/utils/getcolv.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/interface/snesj2.c /petsc/src/snes/utils/dmdasnes.c /petsc/src/sys/classes/bag/makefile /petsc/src/sys/examples/tests/ex13.c /petsc/src/sys/examples/tests/makefile /petsc/src/sys/examples/tests/output/ex13_1.out /petsc/src/sys/examples/tutorials/ex11.c /petsc/src/sys/examples/tutorials/makefile /petsc/src/sys/fileio/fpath.c /petsc/src/sys/fileio/ghome.c /petsc/src/sys/fileio/mprint.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/ptype.c /petsc/src/sys/utils/fuser.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/output/ex26_4.out /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/vec/impls/mpi/pdvec.c
004eb1ce	20-Oct-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'balay/remove-sdir' __SDIR__ is gone. This is an ABI change (PetscError) so dependent packages must be recompiled. * balay/remove-sdir: __SDIR__: remove remaining traces and documen Merge branch 'balay/remove-sdir' __SDIR__ is gone. This is an ABI change (PetscError) so dependent packages must be recompiled. * balay/remove-sdir: __SDIR__: remove remaining traces and document in changes.html __SDIR__: remove usage of __SDIR__ from PETSc sources. This merge fixes one instance of __SDIR__ that was added after 'balay/remove-sdir' branched off. show more ... /petsc/bin/maint/dos/makecpp.tcl /petsc/bin/maint/dos/rules_win32 /petsc/config/BuildSystem/build/buildGraph.py /petsc/config/BuildSystem/config/__init__.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/config/util.py /petsc/config/BuildSystem/graph.py /petsc/config/BuildSystem/nargs.py /petsc/config/BuildSystem/script.py /petsc/config/builder.py /petsc/config/cmakegen.py /petsc/include/petsc-private/fortranimpl.h /petsc/include/petscerror.h /petsc/include/petscsys.h /petsc/makefile /petsc/src/dm/impls/adda/adda.c /petsc/src/docs/doxygen/manual/dev/petsc-kernel.h /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/shell/ftn-custom/zshellf.c ftn-custom/zmatrixf.c /petsc/src/sys/classes/matlabengine/matlab.c /petsc/src/sys/classes/viewer/impls/ams/ams.c /petsc/src/sys/classes/viewer/impls/ascii/vcreatea.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c /petsc/src/sys/classes/viewer/impls/socket/send.c /petsc/src/sys/dll/dlimpl.c /petsc/src/sys/error/adebug.c /petsc/src/sys/error/err.c /petsc/src/sys/error/errabort.c /petsc/src/sys/error/errstop.c /petsc/src/sys/error/errtrace.c /petsc/src/sys/error/fp.c /petsc/src/sys/error/ftn-custom/zerrf.c /petsc/src/sys/error/pstack.c /petsc/src/sys/error/signal.c /petsc/src/sys/ftn-custom/zsys.c /petsc/src/sys/memory/ftn-custom/zmtrf.c /petsc/src/sys/memory/mal.c /petsc/src/sys/memory/mtr.c /petsc/src/sys/objects/ftn-custom/zstart.c /petsc/src/sys/objects/inherit.c /petsc/src/vec/is/is/utils/ftn-custom/ziscoloringf.c /petsc/src/vec/vec/examples/tutorials/ex21.c /petsc/src/vec/vec/interface/f90-custom/zvectorf90.c
52054096	19-Oct-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'jed/doc-restore-zeros-pointer' * jed/doc-restore-zeros-pointer: DMPlex: fix my mistake using NULL in place of (int) 0 doc: restore functions in PETSc zero their arguments Conflict Merge branch 'jed/doc-restore-zeros-pointer' * jed/doc-restore-zeros-pointer: DMPlex: fix my mistake using NULL in place of (int) 0 doc: restore functions in PETSc zero their arguments Conflicts: src/dm/impls/plex/plex.c show more ... /petsc/.mailmap /petsc/bin/maint/gcov.py /petsc/bin/matlab/classes/matlabheader.h /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/opencl.py /petsc/config/PETSc/packages/sowing.py /petsc/config/PETSc/utilities/dataFilesPath.py /petsc/config/builder.py /petsc/config/examples/arch-linux-complex-gcov.py /petsc/config/examples/arch-linux-gcov.py /petsc/config/examples/arch-linux-pkgs-gcov.py /petsc/include/finclude/petscmat.h /petsc/include/mpiuni/mpi.h /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/isimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petscdm.h /petsc/include/petscdmda.h /petsc/include/petscdmplex.h /petsc/include/petscdmshell.h /petsc/include/petscis.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/include/petscvec.h /petsc/include/petscversion.h /petsc/makefile /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tests/ex22.c /petsc/src/dm/examples/tests/ex26.c /petsc/src/dm/examples/tests/ex30.c /petsc/src/dm/examples/tests/ex35.c /petsc/src/dm/examples/tests/ex9.c /petsc/src/dm/examples/tutorials/ex14.c /petsc/src/dm/impls/adda/adda.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/composite/packimpl.h /petsc/src/dm/impls/composite/packm.c /petsc/src/dm/impls/da/da.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/dadist.c /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/da/dagetarray.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/patch/patchcreate.c /petsc/src/dm/impls/plex/examples/tests/ex1.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/ex4.c /petsc/src/dm/impls/plex/examples/tests/ex5.c /petsc/src/dm/impls/plex/examples/tests/ex7.c /petsc/src/dm/impls/plex/examples/tests/ex8.c /petsc/src/dm/impls/plex/examples/tests/output/ex1_7.out /petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out /petsc/src/dm/impls/plex/examples/tests/output/ex7_10.out /petsc/src/dm/impls/plex/examples/tests/output/ex7_11.out /petsc/src/dm/impls/plex/examples/tests/output/ex7_9.out /petsc/src/dm/impls/plex/ftn-custom/zplex.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcgns.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexexodusii.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexinterpolate.c /petsc/src/dm/impls/plex/plexpreallocate.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/impls/redundant/dmredundant.c /petsc/src/dm/impls/shell/dmshell.c /petsc/src/dm/impls/shell/ftn-custom/zdmshellf.c /petsc/src/dm/impls/sliced/sliced.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmi.c /petsc/src/dm/interface/ftn-custom/zdmf.c /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/download/index.html /petsc/src/ksp/ksp/examples/tests/ex32.c /petsc/src/ksp/ksp/examples/tests/ex35.c /petsc/src/ksp/ksp/examples/tests/ex41.c /petsc/src/ksp/ksp/examples/tutorials/ex31.c /petsc/src/ksp/ksp/examples/tutorials/ex39.c /petsc/src/ksp/ksp/examples/tutorials/ex4.c /petsc/src/ksp/ksp/examples/tutorials/ex40.c /petsc/src/ksp/ksp/examples/tutorials/ex42.c /petsc/src/ksp/ksp/examples/tutorials/ex43.c /petsc/src/ksp/ksp/examples/tutorials/ex44f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex46.c /petsc/src/ksp/ksp/examples/tutorials/ex49.c /petsc/src/ksp/ksp/examples/tutorials/ex56.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex49_5.out /petsc/src/ksp/ksp/examples/tutorials/output/ex56_nns.out /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/gamg/agg.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/impls/makefile /petsc/src/ksp/pc/impls/ml/ml.c /petsc/src/ksp/pc/interface/pcregis.c /petsc/src/mat/examples/tests/ex129.c /petsc/src/mat/examples/tests/ex138.c /petsc/src/mat/examples/tests/ex96.c /petsc/src/mat/examples/tests/makefile /petsc/src/mat/examples/tests/output/ex138.out /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mpimattransposematmult.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/seq/inode.c /petsc/src/mat/impls/aij/seq/mattransposematmult.c /petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/sbaij/seq/relax.h matrix.c /petsc/src/mat/utils/gcreate.c /petsc/src/mat/utils/multequal.c /petsc/src/snes/examples/tests/ex15.c /petsc/src/snes/examples/tests/ex16.c /petsc/src/snes/examples/tests/ex8.c /petsc/src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex14.c /petsc/src/snes/examples/tutorials/ex15.c /petsc/src/snes/examples/tutorials/ex22.c /petsc/src/snes/examples/tutorials/ex28.c /petsc/src/snes/examples/tutorials/ex31.c /petsc/src/snes/examples/tutorials/ex35.c /petsc/src/snes/examples/tutorials/ex47cu.cu /petsc/src/snes/examples/tutorials/ex48.c /petsc/src/snes/examples/tutorials/ex52.c /petsc/src/snes/examples/tutorials/ex54.c /petsc/src/snes/examples/tutorials/ex55.c /petsc/src/snes/examples/tutorials/ex58.c /petsc/src/snes/examples/tutorials/ex5f90.F /petsc/src/snes/examples/tutorials/ex5f90t.F /petsc/src/snes/examples/tutorials/ex60.c /petsc/src/snes/examples/tutorials/ex61.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/ex63.c /petsc/src/snes/examples/tutorials/ex633d_db.c /petsc/src/snes/examples/tutorials/ex64.c /petsc/src/snes/examples/tutorials/ex65.c /petsc/src/snes/examples/tutorials/ex653d.c /petsc/src/snes/examples/tutorials/ex67.c /petsc/src/snes/examples/tutorials/ex72.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/examples/tutorials/output/ex12_3.out /petsc/src/snes/examples/tutorials/output/ex12_7.out /petsc/src/snes/examples/tutorials/output/ex12_8.out /petsc/src/snes/examples/tutorials/output/ex19_draw.out /petsc/src/snes/impls/vi/rs/virs.c /petsc/src/snes/impls/vi/rsaug/virsaug.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj2.c /petsc/src/snes/interface/snesut.c /petsc/src/snes/utils/dmdasnes.c /petsc/src/snes/utils/dmlocalsnes.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/sys/classes/bag/makefile /petsc/src/sys/examples/tests/ex13.c /petsc/src/sys/examples/tests/makefile /petsc/src/sys/examples/tests/output/ex13_1.out /petsc/src/sys/fileio/fpath.c /petsc/src/sys/fileio/ghome.c /petsc/src/sys/fileio/mprint.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/options.c /petsc/src/sys/objects/subcomm.c /petsc/src/sys/utils/fuser.c /petsc/src/ts/examples/tests/ex25.c /petsc/src/ts/examples/tests/ex5.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c /petsc/src/ts/examples/tutorials/ex10.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex13.c /petsc/src/ts/examples/tutorials/ex14.c /petsc/src/ts/examples/tutorials/ex15.c /petsc/src/ts/examples/tutorials/ex17.c /petsc/src/ts/examples/tutorials/ex22.c /petsc/src/ts/examples/tutorials/ex22f.F /petsc/src/ts/examples/tutorials/ex22f_mf.F90 /petsc/src/ts/examples/tutorials/ex23.c /petsc/src/ts/examples/tutorials/ex25.c /petsc/src/ts/examples/tutorials/ex9.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c /petsc/src/ts/examples/tutorials/power_grid/ex6.c /petsc/src/vec/is/is/interface/index.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/examples/tests/ex44.c /petsc/src/vec/vec/examples/tests/makefile /petsc/src/vec/vec/examples/tests/output/ex44.out /petsc/src/vec/vec/examples/tutorials/ex21.c /petsc/src/vec/vec/examples/tutorials/ex21f90.F /petsc/src/vec/vec/examples/tutorials/makefile /petsc/src/vec/vec/examples/tutorials/output/ex21f90_1.out /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/seqcusp/cuspvecimpl.h /petsc/src/vec/vec/impls/seq/seqcusp/makefile /petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu /petsc/src/vec/vec/impls/seq/seqcusp/vecscattercusp.cu /petsc/src/vec/vec/utils/veccusp/vscatcusp.c /petsc/src/vec/vec/utils/vpscat.c /petsc/src/vec/vec/utils/vpscat.h /petsc/src/vec/vec/utils/vscat.c
7086a01e	18-Oct-2013	Peter Brune <brune@mcs.anl.gov>	Banished all mention of the old MatGetColoring() and use in examples /petsc/include/petscmat.h /petsc/src/mat/examples/tutorials/ex16.c dlregismat.c matrix.c /petsc/src/mat/matfd/fdmatrix.c /petsc/src/snes/examples/tests/ex1.c /petsc/src/snes/examples/tutorials/ex10d/ex10.c /petsc/src/snes/interface/snesj2.c /petsc/src/ts/examples/tests/ex4.c /petsc/src/vec/is/is/utils/iscoloring.c
efca3c55	29-May-2013	Satish Balay <balay@mcs.anl.gov>	__SDIR__: remove usage of __SDIR__ from PETSc sources. /petsc/.mailmap /petsc/bin/maint/gcov.py /petsc/bin/matlab/classes/matlabheader.h /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/opencl.py /petsc/config/PETSc/packages/sowing.py /petsc/config/PETSc/utilities/dataFilesPath.py /petsc/config/builder.py /petsc/config/examples/arch-linux-complex-gcov.py /petsc/config/examples/arch-linux-gcov.py /petsc/config/examples/arch-linux-pkgs-gcov.py /petsc/include/finclude/petscmat.h /petsc/include/mpiuni/mpi.h /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/fortranimpl.h /petsc/include/petsc-private/isimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petscdm.h /petsc/include/petscdmda.h /petsc/include/petscdmplex.h /petsc/include/petscdmshell.h /petsc/include/petscerror.h /petsc/include/petscis.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/include/petscvec.h /petsc/include/petscversion.h /petsc/makefile /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/examples/tests/ex22.c /petsc/src/dm/examples/tests/ex26.c /petsc/src/dm/examples/tests/ex30.c /petsc/src/dm/examples/tests/ex35.c /petsc/src/dm/examples/tests/ex9.c /petsc/src/dm/examples/tutorials/ex14.c /petsc/src/dm/impls/adda/adda.c /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/composite/packimpl.h /petsc/src/dm/impls/composite/packm.c /petsc/src/dm/impls/da/da.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/da/dadist.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/patch/patchcreate.c /petsc/src/dm/impls/plex/examples/tests/ex1.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/ex4.c 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/petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmi.c /petsc/src/dm/interface/ftn-custom/zdmf.c /petsc/src/docs/doxygen/manual/dev/petsc-kernel.h /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/download/index.html /petsc/src/ksp/ksp/examples/tests/ex32.c /petsc/src/ksp/ksp/examples/tests/ex35.c /petsc/src/ksp/ksp/examples/tests/ex41.c /petsc/src/ksp/ksp/examples/tutorials/ex31.c /petsc/src/ksp/ksp/examples/tutorials/ex39.c /petsc/src/ksp/ksp/examples/tutorials/ex4.c /petsc/src/ksp/ksp/examples/tutorials/ex40.c /petsc/src/ksp/ksp/examples/tutorials/ex42.c /petsc/src/ksp/ksp/examples/tutorials/ex43.c /petsc/src/ksp/ksp/examples/tutorials/ex44f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex46.c /petsc/src/ksp/ksp/examples/tutorials/ex49.c /petsc/src/ksp/ksp/examples/tutorials/ex56.c /petsc/src/ksp/ksp/examples/tutorials/makefile /petsc/src/ksp/ksp/examples/tutorials/output/ex49_5.out 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/petsc/src/ts/examples/tests/ex25.c /petsc/src/ts/examples/tests/ex5.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c /petsc/src/ts/examples/tutorials/ex10.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex13.c /petsc/src/ts/examples/tutorials/ex14.c /petsc/src/ts/examples/tutorials/ex15.c /petsc/src/ts/examples/tutorials/ex17.c /petsc/src/ts/examples/tutorials/ex22.c /petsc/src/ts/examples/tutorials/ex22f.F /petsc/src/ts/examples/tutorials/ex22f_mf.F90 /petsc/src/ts/examples/tutorials/ex23.c /petsc/src/ts/examples/tutorials/ex25.c /petsc/src/ts/examples/tutorials/ex9.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c /petsc/src/ts/examples/tutorials/power_grid/ex6.c /petsc/src/vec/is/is/utils/ftn-custom/ziscoloringf.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/examples/tests/ex44.c /petsc/src/vec/vec/examples/tests/makefile /petsc/src/vec/vec/examples/tests/output/ex44.out /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/seqcusp/cuspvecimpl.h /petsc/src/vec/vec/impls/seq/seqcusp/makefile /petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu /petsc/src/vec/vec/impls/seq/seqcusp/vecscattercusp.cu /petsc/src/vec/vec/interface/f90-custom/zvectorf90.c /petsc/src/vec/vec/utils/veccusp/vscatcusp.c /petsc/src/vec/vec/utils/vpscat.c /petsc/src/vec/vec/utils/vpscat.h /petsc/src/vec/vec/utils/vscat.c
fb396917	17-Oct-2013	Peter Brune <brune@mcs.anl.gov>	Better logging of states of colorings; better error checking /petsc/include/petsc-private/matimpl.h /petsc/src/mat/color/impls/jp/jp.c /petsc/src/mat/color/impls/mis/miscoloring.c /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/color/makefile /petsc/src/mat/color/utils/bipartite.c /petsc/src/mat/color/utils/localcolor.c /petsc/src/mat/color/utils/makefile /petsc/src/mat/color/utils/valid.c dlregismat.c matrix.c /petsc/src/vec/is/sf/examples/tutorials/ex1.c /petsc/src/vec/is/sf/impls/basic/sfbasic.c
0df34763	15-Oct-2013	Hong Zhang <hzhang@mcs.anl.gov>	add matentry2 for htype='wp'; cleanup /petsc/bin/maint/toclapack.sh /petsc/bin/win32fe/win32fe.exe /petsc/bin/win32fe/win32feutils.dll /petsc/conf/gmakegen.py /petsc/conf/rules /petsc/conf/variables /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/__init__.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/fiat.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/programs.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/FEM.py /petsc/config/PETSc/packages/Generator.py /petsc/config/PETSc/packages/PaStiX.py /petsc/config/PETSc/packages/Triangle.py /petsc/config/PETSc/packages/metis.py /petsc/config/PETSc/packages/parmetis.py 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/petsc/src/ts/examples/tests/ex4.c /petsc/src/ts/examples/tests/ex5.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/phasefield/biharmonic.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c /petsc/src/ts/f90-mod/petsctsmod.F /petsc/src/ts/interface/tscreate.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/interface/vecregall.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vec/utils/vsection.c
16407d4f	09-Oct-2013	Peter Brune <brune@mcs.anl.gov>	Merge branch 'master' into prbrune/mat-matcolor Conflicts: src/snes/interface/snesj2.c /petsc/bin/TOPSInstaller.py /petsc/bin/maint/asterix-test.sh /petsc/bin/maint/package-test.sh /petsc/bin/matlab/classes/matlabheader.h /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/opencl.py /petsc/config/PETSc/packages/sowing.py /petsc/config/PETSc/utilities/dataFilesPath.py /petsc/config/PETSc/utilities/sharedLibraries.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-linux-gcc-real-opt.py /petsc/config/examples/arch-linux-gcc-real.py /petsc/config/examples/arch-linux-gxx-complex.py /petsc/config/examples/basic/arch-gcc-complex-O.py /petsc/config/examples/basic/arch-gcc-complex.py /petsc/config/examples/basic/arch-gcc-real-O.py /petsc/config/examples/basic/arch-gcc-real.py /petsc/config/examples/basic/arch-gcc64-complex-O.py /petsc/config/examples/basic/arch-gcc64-complex.py /petsc/config/examples/basic/arch-gcc64-real-O.py /petsc/config/examples/basic/arch-gcc64-real.py /petsc/config/examples/basic/arch-gxx-complex-O.py /petsc/config/examples/basic/arch-gxx-complex.py /petsc/config/examples/basic/arch-gxx-real-O.py /petsc/config/examples/basic/arch-gxx-real.py /petsc/config/examples/basic/arch-gxx64-complex-O.py /petsc/config/examples/basic/arch-gxx64-complex.py /petsc/config/examples/basic/arch-gxx64-real-O.py /petsc/config/examples/basic/arch-gxx64-real.py /petsc/include/finclude/petscmat.h /petsc/include/mpiuni/mpi.h /petsc/include/petsc-private/dmimpl.h /petsc/include/petsc-private/isimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petscdm.h /petsc/include/petscdmda.h /petsc/include/petscdmplex.h /petsc/include/petscdmshell.h 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/petsc/src/mat/color/impls/mis/makefile /petsc/src/mat/color/interface/matcoloringregi.c /petsc/src/mat/examples/tests/ex129.c /petsc/src/mat/examples/tests/ex96.c /petsc/src/mat/impls/aij/mpi/mpimattransposematmult.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/seq/mattransposematmult.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/mffd/mffd.c /petsc/src/mat/impls/sbaij/seq/relax.h dlregismat.c matnull.c /petsc/src/mat/partition/partition.c /petsc/src/mat/utils/gcreate.c /petsc/src/mat/utils/multequal.c /petsc/src/snes/examples/tests/ex15.c /petsc/src/snes/examples/tests/ex16.c /petsc/src/snes/examples/tests/ex8.c /petsc/src/snes/examples/tutorials/cahn-hilliard-schemes/ex1.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex14.c /petsc/src/snes/examples/tutorials/ex15.c /petsc/src/snes/examples/tutorials/ex22.c 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/petsc/src/sys/fileio/ghome.c /petsc/src/sys/logging/utils/classlog.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/options.c /petsc/src/sys/utils/fuser.c /petsc/src/ts/characteristic/interface/characteristic.c /petsc/src/ts/characteristic/interface/slregis.c /petsc/src/ts/examples/tests/ex25.c /petsc/src/ts/examples/tests/ex5.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex7.c /petsc/src/ts/examples/tutorials/ex10.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex13.c /petsc/src/ts/examples/tutorials/ex14.c /petsc/src/ts/examples/tutorials/ex15.c /petsc/src/ts/examples/tutorials/ex17.c /petsc/src/ts/examples/tutorials/ex22.c /petsc/src/ts/examples/tutorials/ex22f.F /petsc/src/ts/examples/tutorials/ex22f_mf.F90 /petsc/src/ts/examples/tutorials/ex23.c /petsc/src/ts/examples/tutorials/ex25.c /petsc/src/ts/examples/tutorials/ex9.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c /petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c /petsc/src/ts/examples/tutorials/power_grid/ex6.c /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/ssp/ssp.c /petsc/src/ts/impls/implicit/gl/gl.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/dlregists.c /petsc/src/ts/interface/tscreate.c /petsc/src/ts/utils/dmts.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/is/is/interface/isreg.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/veccreate.c
4f68377d	08-Oct-2013	Peter Brune <brune@mcs.anl.gov>	Added Mat_Coloring_Apply/Comm events and better -mat_coloring_view /petsc/include/petsc-private/matimpl.h /petsc/include/petscmat.h /petsc/src/mat/color/impls/makefile /petsc/src/mat/color/impls/minpack/color.c /petsc/src/mat/color/impls/minpack/color.h /petsc/src/mat/color/impls/minpack/degr.c /petsc/src/mat/color/impls/minpack/dsm.c /petsc/src/mat/color/impls/minpack/ido.c /petsc/src/mat/color/impls/minpack/makefile /petsc/src/mat/color/impls/minpack/numsrt.c /petsc/src/mat/color/impls/minpack/scolor.c /petsc/src/mat/color/impls/minpack/seq.c /petsc/src/mat/color/impls/minpack/setr.c /petsc/src/mat/color/impls/minpack/slo.c /petsc/src/mat/color/impls/mis/makefile /petsc/src/mat/color/impls/mis/miscoloring.c /petsc/src/mat/color/impls/natural/makefile /petsc/src/mat/color/impls/natural/natural.c /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/color/interface/matcoloringregi.c /petsc/src/mat/examples/tests/ex161.c dlregismat.c matrix.c /petsc/src/snes/interface/snesj2.c
335efc43	02-Oct-2013	Peter Brune <brune@mcs.anl.gov>	Added MatColoring object to replace MatGetColor() /petsc/conf/rules /petsc/config/BuildSystem/config/packages/make.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/Triangle.py /petsc/config/PETSc/packages/tetgen.py /petsc/include/finclude/petscksp.h /petsc/include/finclude/petscsnes.h /petsc/include/petsc-private/matimpl.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petscdt.h /petsc/include/petscfe.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/makefile /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/ex5.c /petsc/src/dm/impls/plex/examples/tests/output/ex3_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_5.out /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/interface/dmregall.c /petsc/src/ksp/ksp/interface/ftn-custom/zitfuncf.c /petsc/src/mat/color/ftn-custom/makefile /petsc/src/mat/color/impls/makefile /petsc/src/mat/color/interface/makefile /petsc/src/mat/color/interface/matcoloring.c /petsc/src/mat/color/interface/matcoloringregi.c /petsc/src/mat/color/makefile /petsc/src/mat/examples/tests/ex161.c /petsc/src/mat/examples/tests/ex163.c /petsc/src/mat/impls/aij/seq/matmatmult.c /petsc/src/mat/impls/aij/seq/matrart.c dlregismat.c matrix.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/interface/ftn-custom/zsnesf.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj2.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/sys/objects/state.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/output/ex26_4.out
25a75388	01-Oct-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'jed/remove-dynamic-loading-option' Option --with-dynamic-loading has been removed. Similar functionality is available via the run-time option -dynamic_library_preload. * jed/remove-d Merge branch 'jed/remove-dynamic-loading-option' Option --with-dynamic-loading has been removed. Similar functionality is available via the run-time option -dynamic_library_preload. * jed/remove-dynamic-loading-option: Sys: PetscContainerCreate must call PetscSysInitializePackage Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES Conflicts: src/dm/impls/mesh/mesh.c src/dm/interface/dlregisdmdm.c src/docs/website/documentation/changes/dev.html show more ... /petsc/bin/TOPSInstaller.py /petsc/bin/maint/asterix-test.sh /petsc/bin/maint/package-test.sh /petsc/conf/rules /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/packages/Triangle.py /petsc/config/PETSc/packages/tetgen.py /petsc/config/PETSc/utilities/sharedLibraries.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-linux-gcc-real-opt.py /petsc/config/examples/arch-linux-gcc-real.py /petsc/config/examples/arch-linux-gxx-complex.py /petsc/config/examples/basic/arch-gcc-complex-O.py /petsc/config/examples/basic/arch-gcc-complex.py /petsc/config/examples/basic/arch-gcc-real-O.py /petsc/config/examples/basic/arch-gcc-real.py /petsc/config/examples/basic/arch-gcc64-complex-O.py /petsc/config/examples/basic/arch-gcc64-complex.py /petsc/config/examples/basic/arch-gcc64-real-O.py /petsc/config/examples/basic/arch-gcc64-real.py /petsc/config/examples/basic/arch-gxx-complex-O.py /petsc/config/examples/basic/arch-gxx-complex.py /petsc/config/examples/basic/arch-gxx-real-O.py /petsc/config/examples/basic/arch-gxx-real.py /petsc/config/examples/basic/arch-gxx64-complex-O.py /petsc/config/examples/basic/arch-gxx64-complex.py /petsc/config/examples/basic/arch-gxx64-real-O.py /petsc/config/examples/basic/arch-gxx64-real.py /petsc/include/finclude/petscksp.h /petsc/include/finclude/petscsnes.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petscdt.h /petsc/include/petscfe.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/makefile /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/ex5.c /petsc/src/dm/impls/plex/examples/tests/output/ex3_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex3_5.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/interface/dlregisdmdm.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmregall.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/faq.html /petsc/src/ksp/ksp/interface/dlregisksp.c /petsc/src/ksp/ksp/interface/dmksp.c /petsc/src/ksp/ksp/interface/ftn-custom/zitfuncf.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/coarsen/coarsen.c /petsc/src/mat/examples/tests/ex163.c /petsc/src/mat/impls/mffd/mffd.c dlregismat.c matnull.c /petsc/src/mat/partition/partition.c /petsc/src/mat/utils/gcreate.c /petsc/src/snes/impls/ms/ms.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/interface/dlregissnes.c /petsc/src/snes/interface/ftn-custom/zsnesf.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesj2.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/snes/utils/dmdasnes.c /petsc/src/snes/utils/dmsnes.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/random/interface/randomc.c /petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/dll/dlimpl.c /petsc/src/sys/dll/reg.c /petsc/src/sys/logging/utils/classlog.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/state.c /petsc/src/ts/characteristic/interface/characteristic.c /petsc/src/ts/characteristic/interface/slregis.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/output/ex26_4.out /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/ssp/ssp.c /petsc/src/ts/impls/implicit/gl/gl.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/dlregists.c /petsc/src/ts/interface/tscreate.c /petsc/src/ts/utils/dmts.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/is/is/interface/isreg.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/veccreate.c
e5c84f05	25-Sep-2013	Jed Brown <jedbrown@mcs.anl.gov>	doc: restore functions in PETSc zero their arguments This is done to prevent accidental misuse. In general, one can pass NULL for the pointer argument to keep the pointer around for longer, but use doc: restore functions in PETSc zero their arguments This is done to prevent accidental misuse. In general, one can pass NULL for the pointer argument to keep the pointer around for longer, but use of arrays after restoration is invalid. Suggested-by: Wolfgang Bangerth <bangerth@math.tamu.edu> show more ... /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/src/dm/impls/da/dageometry.c /petsc/src/dm/impls/da/dagetarray.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/interface/dm.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/pc/impls/factor/factimpl.c /petsc/src/ksp/pc/impls/factor/factor.c /petsc/src/ksp/pc/impls/factor/factor.h /petsc/src/ksp/pc/impls/factor/icc/icc.c /petsc/src/ksp/pc/impls/factor/ilu/ilu.c /petsc/src/ksp/pc/impls/gamg/gamg.c matrix.c /petsc/src/mat/utils/getcolv.c /petsc/src/sys/examples/tutorials/ex11.c /petsc/src/sys/examples/tutorials/makefile /petsc/src/sys/objects/ptype.c /petsc/src/vec/is/is/interface/index.c /petsc/src/vec/is/utils/pmap.c
2909509f	24-Sep-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'madams/mat-residual' * madams/mat-residual: refactored residuals by adding a 'residual' method to Mat /petsc/include/finclude/petscmat.h /petsc/include/petsc-private/kspimpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petsc-private/snesimpl.h /petsc/include/petscksp.h /petsc/include/petscmat.h /petsc/include/petscsnes.h /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/impls/cheby/cheby.c /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/ksp/impls/specest/specest.c /petsc/src/ksp/ksp/interface/ftn-custom/zitfuncf.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/ksp/pc/impls/asa/asa.c /petsc/src/ksp/pc/impls/mg/mg.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/mat/impls/adj/mpi/mpiadj.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/blockmat/seq/blockmat.c /petsc/src/mat/impls/composite/mcomposite.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/impls/scatter/mscatter.c /petsc/src/mat/impls/shell/shell.c dlregismat.c ftn-custom/zmatrixf.c matrix.c /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/impls/gs/snesgs.c /petsc/src/snes/impls/ls/ls.c /petsc/src/snes/impls/ms/ms.c /petsc/src/snes/impls/multiblock/multiblock.c /petsc/src/snes/impls/nasm/nasm.c /petsc/src/snes/impls/ncg/snesncg.c /petsc/src/snes/impls/qn/qn.c /petsc/src/snes/impls/richardson/snesrichardson.c /petsc/src/snes/impls/tr/tr.c /petsc/src/snes/impls/vi/rs/virs.c /petsc/src/snes/impls/vi/rsaug/virsaug.c /petsc/src/snes/impls/vi/ss/viss.c /petsc/src/snes/interface/ftn-custom/zsnesf.c /petsc/src/snes/interface/snes.c /petsc/src/snes/interface/snesut.c
b4e904d1	23-Sep-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'barry/fixmatmultseqaijflopcount' * barry/fixmatmultseqaijflopcount: removed Mat option for skipping checking of compressed row format since it is now free using the nonzerorowcnt pre Merge branch 'barry/fixmatmultseqaijflopcount' * barry/fixmatmultseqaijflopcount: removed Mat option for skipping checking of compressed row format since it is now free using the nonzerorowcnt previously introduced changed seqbaij to count nonzero rows in assembly and use those values to compute flops in MatMult added seqij nonzerorowcnt used to determine flop count in MatMult_SeqAIJ() show more ... /petsc/bin/maint/toclapack.sh /petsc/bin/win32fe/win32fe.exe /petsc/bin/win32fe/win32feutils.dll /petsc/conf/gmakegen.py /petsc/conf/rules /petsc/conf/variables /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py 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f9426fe0	14-Sep-2013	Mark Adams <mfadams@lbl.gov>	refactored residuals by adding a 'residual' method to Mat /petsc/bin/maint/toclapack.sh /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/fiat.py /petsc/config/PETSc/FEM.py /petsc/config/PETSc/packages/Generator.py /petsc/config/PETSc/packages/metis.py /petsc/config/PETSc/packages/parmetis.py /petsc/config/PETSc/packages/scalapack.py /petsc/config/builder.py /petsc/include/finclude/petscdmdef.h /petsc/include/finclude/petscmat.h /petsc/include/petsc-private/dmpleximpl.h /petsc/include/petsc-private/matimpl.h /petsc/include/petsc-private/petscfeimpl.h /petsc/include/petscblaslapack.h /petsc/include/petscblaslapack_c.h /petsc/include/petscblaslapack_caps.h /petsc/include/petscblaslapack_qd.h /petsc/include/petscblaslapack_stdcall.h /petsc/include/petscblaslapack_uscore.h /petsc/include/petscdm.h /petsc/include/petscdmda.h 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cc85fe4d	04-Sep-2013	Barry Smith <bsmith@mcs.anl.gov>	Merge branch 'barry/dmvecmattypes' into barry/saws Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc Conflicts: src/ksp/ksp/interface/ams/kspams.c s Merge branch 'barry/dmvecmattypes' into barry/saws Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc Conflicts: src/ksp/ksp/interface/ams/kspams.c src/snes/impls/composite/snescomposite.c src/snes/impls/gs/snesgs.c src/snes/impls/nasm/nasm.c src/snes/impls/ngmres/snesngmres.c show more ... /petsc/.mailmap /petsc/bin/maint/toclapack.sh /petsc/bin/matlab/PetscReadBinaryMatlab.m /petsc/bin/matlab/classes/matlabheader.h /petsc/conf/test /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/hdf5.py 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56f85f32	01-Sep-2013	Barry Smith <bsmith@mcs.anl.gov>	fix PetscObjectSAWsBlock() cannot call PETSc routines while locking SAWs because they may lock it also matrix.c /petsc/src/sys/ams/pams.c /petsc/src/sys/classes/viewer/impls/ams/amsopen.c /petsc/src/sys/objects/pinit.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c /petsc/src/ts/interface/ts.c
d45a07a7	31-Aug-2013	Barry Smith <bsmith@mcs.anl.gov>	SAWs now compiles and runs in PETSc with parallel PETSc /petsc/bin/saws/SAWs.py /petsc/bin/saws/getSAWs.bash /petsc/bin/saws/getStack.bash /petsc/config/PETSc/packages/saws.py /petsc/include/petsc-private/petscimpl.h /petsc/include/petscviewersaws.h /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/saws.html /petsc/src/ksp/ksp/interface/ams/kspams.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/impls/mffd/mffd.c matrix.c /petsc/src/snes/interface/snes.c /petsc/src/snes/mf/snesmfj.c /petsc/src/sys/ams/pams.c /petsc/src/sys/classes/draw/impls/x/xinit.c /petsc/src/sys/classes/draw/impls/x/xops.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/random/interface/randomc.c /petsc/src/sys/classes/viewer/impls/ams/ams.c /petsc/src/sys/classes/viewer/impls/ams/amsopen.c /petsc/src/sys/error/pstack.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/objects/destroy.c /petsc/src/sys/objects/inherit.c /petsc/src/sys/objects/init.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/utils/pdisplay.c /petsc/src/sys/webserver/petscwebclient.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c /petsc/src/ts/interface/ts.c
aa2d57e9	30-Aug-2013	Jed Brown <jedbrown@mcs.anl.gov>	Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES This option was mostly redundant because normal shared libraries satisfy all the same needs. This commit adds the run-time option -dynami Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES This option was mostly redundant because normal shared libraries satisfy all the same needs. This commit adds the run-time option -dynamic_library_preload that can be used to load/initialize all the packages in advance, as used to be done when --with-dynamic-loading. The PetscDLLibraryRegister_petscxxx functions have been kept, but are not called unless -dynamic_library_preload is used. The petsc-dev discussion, "Why --with-dynamic-loading?" did not reach consensus about whether this was ever useful, so it may also be removable. show more ... /petsc/bin/TOPSInstaller.py /petsc/bin/maint/asterix-test.sh /petsc/bin/maint/package-test.sh /petsc/bin/maint/toclapack.sh /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/packages/metis.py /petsc/config/PETSc/packages/parmetis.py /petsc/config/PETSc/packages/scalapack.py /petsc/config/PETSc/utilities/sharedLibraries.py /petsc/config/examples/arch-c-exodus-dbg-builder.py /petsc/config/examples/arch-linux-gcc-real-opt.py /petsc/config/examples/arch-linux-gcc-real.py /petsc/config/examples/arch-linux-gxx-complex.py /petsc/config/examples/basic/arch-gcc-complex-O.py /petsc/config/examples/basic/arch-gcc-complex.py /petsc/config/examples/basic/arch-gcc-real-O.py /petsc/config/examples/basic/arch-gcc-real.py /petsc/config/examples/basic/arch-gcc64-complex-O.py /petsc/config/examples/basic/arch-gcc64-complex.py /petsc/config/examples/basic/arch-gcc64-real-O.py /petsc/config/examples/basic/arch-gcc64-real.py /petsc/config/examples/basic/arch-gxx-complex-O.py /petsc/config/examples/basic/arch-gxx-complex.py /petsc/config/examples/basic/arch-gxx-real-O.py /petsc/config/examples/basic/arch-gxx-real.py /petsc/config/examples/basic/arch-gxx64-complex-O.py /petsc/config/examples/basic/arch-gxx64-complex.py /petsc/config/examples/basic/arch-gxx64-real-O.py /petsc/config/examples/basic/arch-gxx64-real.py /petsc/include/petscsys.h /petsc/src/dm/impls/da/fdda.c /petsc/src/dm/impls/mesh/mesh.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/interface/dlregisdmdm.c /petsc/src/dm/interface/dm.c /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/faq.html /petsc/src/ksp/ksp/interface/dlregisksp.c /petsc/src/ksp/ksp/interface/dmksp.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/coarsen/coarsen.c /petsc/src/mat/examples/tests/output/ex152_1.out /petsc/src/mat/examples/tests/output/ex152_2.out /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/mffd/mffd.c dlregismat.c matnull.c /petsc/src/mat/partition/partition.c /petsc/src/mat/utils/gcreate.c /petsc/src/snes/impls/ms/ms.c /petsc/src/snes/interface/dlregissnes.c /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmsnes.c /petsc/src/sys/classes/draw/interface/drawreg.c /petsc/src/sys/classes/random/interface/randomc.c /petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c /petsc/src/sys/classes/viewer/interface/dlregispetsc.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/dll/dlimpl.c /petsc/src/sys/dll/reg.c /petsc/src/sys/logging/utils/classlog.c /petsc/src/sys/objects/options.c /petsc/src/sys/utils/mpits.c /petsc/src/ts/characteristic/interface/characteristic.c /petsc/src/ts/characteristic/interface/slregis.c /petsc/src/ts/impls/arkimex/arkimex.c /petsc/src/ts/impls/explicit/ssp/ssp.c /petsc/src/ts/impls/implicit/gl/gl.c /petsc/src/ts/impls/rosw/rosw.c /petsc/src/ts/interface/dlregists.c /petsc/src/ts/interface/tscreate.c /petsc/src/ts/utils/dmts.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/is/is/interface/isreg.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/isltog.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/pf/interface/pf.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/interface/veccreate.c /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vec/utils/vsection.c
82f1cb7f	30-Aug-2013	Satish Balay <balay@mcs.anl.gov>	Merge branch 'jed/mat-factor-shift' into maint /petsc/include/petscmat.h /petsc/src/ksp/ksp/examples/tests/output/ex11_1.out /petsc/src/ksp/ksp/examples/tests/output/ex11_2.out /petsc/src/ksp/ksp/examples/tutorials/output/ex10_aijcusparse.out /petsc/src/ksp/ksp/examples/tutorials/output/ex10_mpicrl.out /petsc/src/ksp/ksp/examples/tutorials/output/ex10_mpicsrperm.out /petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcrl.out /petsc/src/ksp/ksp/examples/tutorials/output/ex10_seqcsrperm.out /petsc/src/ksp/ksp/examples/tutorials/output/ex34_1.out /petsc/src/ksp/ksp/examples/tutorials/output/ex50.out /petsc/src/ksp/ksp/examples/tutorials/output/ex50_2.out /petsc/src/ksp/pc/impls/factor/factimpl.c dlregismat.c /petsc/src/snes/examples/tutorials/output/ex18_1.out /petsc/src/snes/examples/tutorials/output/ex19_10.out /petsc/src/snes/examples/tutorials/output/ex19_13.out /petsc/src/snes/examples/tutorials/output/ex19_6.out /petsc/src/snes/examples/tutorials/output/ex19_7.out /petsc/src/snes/examples/tutorials/output/ex19_9.out /petsc/src/snes/examples/tutorials/output/ex19_ngmres_fas_ms.out /petsc/src/snes/examples/tutorials/output/ex20_1.out /petsc/src/snes/examples/tutorials/output/ex40f90.out /petsc/src/snes/examples/tutorials/output/ex46_1.out /petsc/src/snes/examples/tutorials/output/ex48_4.out /petsc/src/snes/examples/tutorials/output/ex5_1.out /petsc/src/snes/examples/tutorials/output/ex5_2.out /petsc/src/snes/examples/tutorials/output/ex5_3.out /petsc/src/snes/examples/tutorials/output/ex5_4.out /petsc/src/snes/examples/tutorials/output/ex5_5.out /petsc/src/snes/examples/tutorials/output/ex70_0.out /petsc/src/snes/examples/tutorials/output/ex70_1.out
322b3bd8	30-Aug-2013	Satish Balay <balay@mcs.anl.gov>	Merge branch 'jed/is-view-from-options' into maint /petsc/config/PETSc/packages/scalapack.py /petsc/include/petscao.h /petsc/src/dm/interface/dm.c /petsc/src/ksp/pc/impls/bjacobi/bjacobi.c /petsc/src/ksp/pc/impls/gamg/gamg.c matrix.c /petsc/src/snes/interface/snes.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/objects/options.c /petsc/src/vec/is/ao/impls/basic/aobasic.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/vec/interface/vector.c
de9f814b	28-Aug-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'maint' * maint: MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version SF docs: add link to summary page and fix title Doc: Fixed DM code in manual /petsc/config/BuildSystem/config/package.py /petsc/config/PETSc/packages/valgrind.py /petsc/config/builder.py /petsc/include/petsc-private/dmimpl.h /petsc/include/petscdm.h /petsc/include/petscdmplex.h /petsc/include/petscsys.h /petsc/include/petscvec.h /petsc/share/petsc/datafiles/meshes/simpleblock-100.exo /petsc/src/benchmarks/benchmarkExample.py /petsc/src/dm/impls/composite/pack.c /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/plex/examples/tests/ex7.c /petsc/src/dm/impls/plex/examples/tests/ex8.c /petsc/src/dm/impls/plex/examples/tests/output/ex8_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_2.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_3.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_4.out /petsc/src/dm/impls/plex/examples/tests/output/ex8_5.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plexvtk.c /petsc/src/dm/impls/plex/plexvtu.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmi.c /petsc/src/docs/manualpages-sec/header_PetscSF /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/index.html /petsc/src/ksp/ksp/examples/tests/ex21.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c /petsc/src/mat/examples/tests/ex170.c /petsc/src/mat/examples/tests/output/ex170_0.out /petsc/src/mat/examples/tests/output/ex170_1.out /petsc/src/mat/examples/tests/output/ex170_2.out /petsc/src/mat/examples/tests/output/ex170_3.out /petsc/src/mat/examples/tests/output/ex170_4.out /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/aij/seq/aij.h /petsc/src/mat/impls/aij/seq/matmatmult.c matrix.c /petsc/src/mat/utils/axpy.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex31.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/ex72.c /petsc/src/snes/examples/tutorials/makefile /petsc/src/snes/utils/dmplexsnes.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c /petsc/src/sys/utils/sortd.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/vec/vec/utils/vinv.c /petsc/src/vec/vec/utils/vsection.c
774cf152	28-Aug-2013	Jed Brown <jedbrown@mcs.anl.gov>	MatSeqAIJGetArrayF90: add man pages and fix typo in MatDense version /petsc/bin/matlab/PetscReadBinaryMatlab.m /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/PETSc/packages/openmp.py /petsc/config/PETSc/packages/pARMS.py /petsc/config/PETSc/packages/parmetis.py /petsc/config/cmakeboot.py /petsc/config/configure.py /petsc/share/petsc/datafiles/meshes/annulus-20.exo /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/plex/plexexodusii.c /petsc/src/docs/manualpages-sec/header_PetscSF /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/website/documentation/index.html /petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/ksp/interface/itfunc.c /petsc/src/mat/impls/aij/seq/aij.c matrix.c /petsc/src/snes/linesearch/impls/bt/linesearchbt.c /petsc/src/sys/classes/bag/bag.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/tutorials/HandsOnExercise.html
4b5a970c	26-Aug-2013	Jed Brown <jedbrown@mcs.anl.gov>	Merge branch 'jed/is-view-from-options' Fix SEGV on -ao_view, which was being called from AOCreate. * jed/is-view-from-options: AO: fix erroneous processing of -ao_view and factor into AOViewFrom Merge branch 'jed/is-view-from-options' Fix SEGV on -ao_view, which was being called from AOCreate. * jed/is-view-from-options: AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions doc: fix named argument in {Vec,Mat,DM}ViewFromOptions show more ... /petsc/include/petscao.h /petsc/include/petscsys.h /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib matrix.c /petsc/src/sys/examples/tutorials/ex11.c /petsc/src/sys/examples/tutorials/makefile /petsc/src/sys/objects/ptype.c /petsc/src/vec/is/ao/impls/basic/aobasic.c /petsc/src/vec/is/ao/impls/mapping/aomapping.c /petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c /petsc/src/vec/is/ao/interface/ao.c /petsc/src/vec/vec/interface/vector.c
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