fileio - OpenGrok history log for /petsc/src/sys/fileio

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8b8bf82c	12-Feb-2021	Barry Smith <bsmith@mcs.anl.gov>	Do not use MPI_Bcast() on a single rank. This will allow the direct reading of much larger files, in, for example, MatLoad_SeqAIJ_Binary Commit-type: optimization, bug-fix, portability-fix /10m Re Do not use MPI_Bcast() on a single rank. This will allow the direct reading of much larger files, in, for example, MatLoad_SeqAIJ_Binary Commit-type: optimization, bug-fix, portability-fix /10m Reported-by: lpoirel at gitlab.com show more ... /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/python.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/nargs.py /petsc/config/query_tests.py /petsc/config/report_tests.py /petsc/config/testparse.py /petsc/gmakefile /petsc/gmakefile.test /petsc/include/petscksp.h /petsc/include/petscsys.h /petsc/include/petscversion.h /petsc/src/binding/petsc4py/.gitignore /petsc/src/docs/sphinx_docs/developers/testing.rst /petsc/src/docs/sphinx_docs/manual/snes.rst /petsc/src/docs/website/documentation/faq.html /petsc/src/docs/website/download/index.html /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/baij/seq/baijfact81.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/matfd/fdmatrix.c sysio.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/python/pythonsys.c /petsc/src/ts/tutorials/ex25.c /petsc/src/ts/utils/dmlocalts.c /petsc/src/ts/utils/dmplexlandau/plexland.c
960a8ad4	20-Jan-2021	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/release' /petsc/.gitlab/CODEOWNERS /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/PARTY.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/X.py /petsc/config/BuildSystem/config/packages/Zoltan.py /petsc/config/BuildSystem/config/packages/alquimia.py /petsc/config/BuildSystem/config/packages/blis.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/eigen.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/googletest.py /petsc/config/BuildSystem/config/packages/hwloc.py /petsc/config/BuildSystem/config/packages/kokkos-kernels.py /petsc/config/BuildSystem/config/packages/kokkos.py /petsc/config/BuildSystem/config/packages/libjpeg.py /petsc/config/BuildSystem/config/packages/libpng.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/ml.py /petsc/config/BuildSystem/config/packages/mmg.py /petsc/config/BuildSystem/config/packages/mstk.py /petsc/config/BuildSystem/config/packages/openblas.py /petsc/config/BuildSystem/config/packages/parmmg.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/pragmatic.py /petsc/config/BuildSystem/config/packages/python.py /petsc/config/BuildSystem/config/packages/slepc.py 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659f7ba0	19-Jan-2021	Barry Smith <bsmith@mcs.anl.gov>	Remove duplicate manual page for PetscHelpPrintf() and improve the material. 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ffc4695b	08-Oct-2020	Barry Smith <bsmith@mcs.anl.gov>	Convert MPI error type to PETSc error with string message for all MPI calls Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-pro Convert MPI error type to PETSc error with string message for all MPI calls Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-process their errors better. The test harness will now automatically retry tests that fail with MPI, this may help with Intel MPI that produces seemingly random failures. Commit-type: error-checking /spend 30m show more ... /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/hip.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/yaml.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/configure.py /petsc/config/examples/arch-ci-linux-hip-double.py /petsc/config/examples/arch-ci-linux-intel-cmplx.py /petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py 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3f2a96e3	13-Nov-2020	Matthew G. Knepley <knepley@gmail.com>	Plex: Added parallel SBR refinement - Only 2D /petsc/config/BuildSystem/config/packages/fblaslapack.py /petsc/config/BuildSystem/config/packages/valgrind.py /petsc/config/BuildSystem/config/utilities/macosFirewall.py /petsc/gmakefile.test /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petscdmplex.h /petsc/include/petscdmplextypes.h /petsc/include/petsclog.h /petsc/include/petscversion.h /petsc/makefile /petsc/setup.py /petsc/src/binding/petsc4py/DESCRIPTION.rst /petsc/src/binding/petsc4py/conf/epydoc.cfg /petsc/src/binding/petsc4py/docs/index.rst /petsc/src/binding/petsc4py/docs/source/index.rst /petsc/src/binding/petsc4py/docs/source/install.rst /petsc/src/binding/petsc4py/setup.py /petsc/src/dm/dt/fv/interface/fv.c /petsc/src/dm/impls/da/daview.c /petsc/src/dm/impls/plex/glexg.c /petsc/src/dm/impls/plex/plexadapt.c /petsc/src/dm/impls/plex/plexgenerate.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/tests/ex40.c /petsc/src/dm/interface/dm.c /petsc/src/docs/sphinx_docs/index.rst /petsc/src/docs/sphinx_docs/manual/additional.rst /petsc/src/docs/sphinx_docs/manual/blas-lapack.rst /petsc/src/docs/sphinx_docs/manual/images/mathworks-account-2.png /petsc/src/docs/sphinx_docs/manual/images/mathworks-account-3.png /petsc/src/docs/sphinx_docs/manual/images/mathworks-account-4.png /petsc/src/docs/sphinx_docs/manual/images/mathworks-account-5.png /petsc/src/docs/sphinx_docs/manual/images/mathworks-account.png /petsc/src/docs/sphinx_docs/manual/matlab.rst /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/installation.html /petsc/src/docs/website/download/index.html /petsc/src/docs/website/index.html /petsc/src/docs/website/miscellaneous/external.html /petsc/src/docs/website/miscellaneous/index.html /petsc/src/docs/website/publications/index.html /petsc/src/ksp/ksp/impls/cheby/cheby.c /petsc/src/ksp/ksp/impls/gmres/agmres/agmresorthog.c /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/seq/baij2.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/order/spectral.c /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/tutorials/ex19.c /petsc/src/snes/tutorials/output/ex19_asm_matconvert.out /petsc/src/sys/classes/draw/interface/ftn-custom/zdrawf.c /petsc/src/sys/classes/draw/utils/image.c /petsc/src/sys/classes/matlabengine/matlab.c /petsc/src/sys/classes/viewer/impls/ams/ams.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/draw/drawv.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c /petsc/src/sys/classes/viewer/impls/socket/send.c /petsc/src/sys/error/errtrace.c apple_fdir.c /petsc/src/tao/leastsquares/impls/pounders/gqt.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/leastsquares/tutorials/chwirut1f.F90 /petsc/src/ts/utils/dmplexlandau/makefile /petsc/src/vec/is/is/impls/block/block.c /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/is/is/impls/stride/stride.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/interface/vector.c /petsc/src/vec/vec/tutorials/ex31.c
90544984	13-Nov-2020	Barry Smith <bsmith@mcs.anl.gov>	Provide support for using valgrind with PETSc on the Apple MacOS, all tests pass Turn off opencl support for MPICH if running on Apple MacOS with valgrind, because the check in hwloc() crashes un Provide support for using valgrind with PETSc on the Apple MacOS, all tests pass Turn off opencl support for MPICH if running on Apple MacOS with valgrind, because the check in hwloc() crashes under valgrind Turn off lazy dynamic loading of shared libraries with valgrind, because that crashes valgrind Provide custom mkdtemp() with valgrind because Apple's system one is not supported by valgrind Add Apple specific suppression files for valgrind Update documentation for using valgrind with Apple Warn user they must use --download-fblaslapack or --download-f2cblaslapack with valgrind Commit-type: portability-fix /spend 6h Reported-by: Hapla Vaclav <vaclav.hapla@erdw.ethz.ch> Thanks-to: Hong Zhang hongzhang@anl.gov show more ... 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b458e8f1	05-Nov-2020	Jose E. 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501ae109	28-Sep-2020	Jose E. 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2da392cc	17-Aug-2020	Barry Smith <bsmith@mcs.anl.gov>	Turn on checkbadSource test to generate an error when found; fix all source code that causes errors Commit-type: portability-fix, testing-fix, style-fix, feature, maintainability /spend 1.5h /petsc/.gitignore /petsc/.gitlab-alcf-ci.yml /petsc/.gitlab-ci.yml /petsc/.gitlab/CODEOWNERS /petsc/.readthedocs.yml /petsc/GNUmakefile /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compile/HC.py /petsc/config/BuildSystem/config/compile/HIP.py /petsc/config/BuildSystem/config/compile/SYCL.py /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/compilersFortran.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADOLC.py /petsc/config/BuildSystem/config/packages/AMReX.py 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e94e781b	25-Oct-2019	Jacob Faibussowitsch <jacob.fai@gmail.com>	Added functionality to selectively filter PetscInfo() output based on calling class to mimic some OS system logs. New functionality includes: - Filter for a set of classes - Filter out a set of class Added functionality to selectively filter PetscInfo() output based on calling class to mimic some OS system logs. New functionality includes: - Filter for a set of classes - Filter out a set of classes - Filter for MPI/PETSC_COMM_SELF - Filter for anything not on MPI/PETSC_COMM_SELF - Writing PetscInfo() output to new file - Appending output to existing PetscInfo() file - Any combination of the above Credit to Vaclav Hapla for raising the initial issue, helping design the eventual API, and substantially assisting in debugging. show more ... /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/finclude/petscsys.h /petsc/include/petsc/private/logimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscsys.h /petsc/lib/petsc/bin/maint/check-ci-settings.sh /petsc/lib/petsc/conf/bfort-petsc.txt /petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c 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cc843e7a	17-Mar-2020	Lisandro Dalcin <dalcinl@gmail.com>	Binary-IO: Various fixes and enhancements * Add missing error checking * Reorganize and remove duplicated code for easier maintenance * Fix STDIO with FILE_MODE_READ to open files only in process ze Binary-IO: Various fixes and enhancements * Add missing error checking * Reorganize and remove duplicated code for easier maintenance * Fix STDIO with FILE_MODE_READ to open files only in process zero * Fix MPIIO subviewers to synchronize the file on Get/Restore show more ... /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/AMReX.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/CoDiPack.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/adblaslapack.py /petsc/config/BuildSystem/config/packages/blis.py 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f253e43c	09-Mar-2020	Lisandro Dalcin <dalcinl@gmail.com>	PetscBinaryWrite: Remove `istemp` boolean flag /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/compilersFortran.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/zstd.py /petsc/config/configure.py /petsc/config/examples/arch-ci-linux-pkgs-64idx.py /petsc/configure /petsc/include/petsc/private/isimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petscsys.h /petsc/include/petscts.h /petsc/include/petscviewer.h /petsc/makefile /petsc/src/contrib/fun3d/comp/flow.c /petsc/src/dm/dt/dualspace/interface/dualspace.c /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/impls/da/da.c /petsc/src/dm/impls/da/da2.c /petsc/src/dm/impls/da/dainterp.c /petsc/src/dm/impls/da/daview.c /petsc/src/dm/impls/da/gr1.c /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/swarm/swarmpic_view.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/ksp/ksp/examples/tests/ex12f.F /petsc/src/ksp/ksp/examples/tests/ex52f.F /petsc/src/ksp/ksp/examples/tutorials/ex52.c /petsc/src/ksp/ksp/examples/tutorials/ex52f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex75f.F90 /petsc/src/ksp/ksp/examples/tutorials/ex76f.F90 /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/examples/tests/ex192.c /petsc/src/mat/examples/tests/ex214.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/sbaij/mpi/mpisbaij.c /petsc/src/snes/examples/tests/ex18f90.F90 /petsc/src/snes/examples/tutorials/ex61gen.c /petsc/src/snes/impls/composite/snescomposite.c /petsc/src/snes/impls/ngmres/snesngmres.c /petsc/src/snes/interface/snes.c /petsc/src/snes/utils/dmsnes.c /petsc/src/sys/classes/bag/bag.c /petsc/src/sys/classes/draw/utils/image.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/binary/f90-custom/zbinvf90.c /petsc/src/sys/classes/viewer/impls/socket/matlab/bread.c /petsc/src/sys/classes/viewer/impls/socket/matlab/swrite.c /petsc/src/sys/classes/viewer/interface/viewreg.c /petsc/src/sys/error/err.c /petsc/src/sys/f90-mod/petscsysmod.F90 ftn-custom/zsysiof.c sysio.c /petsc/src/sys/objects/pinit.c /petsc/src/sys/webclient/client.c /petsc/src/ts/adapt/interface/tsadapt.c /petsc/src/ts/examples/tests/ex15.c /petsc/src/ts/examples/tests/output/ex15_conservative.out /petsc/src/ts/examples/tests/output/ex15_nonconservative.out /petsc/src/ts/examples/tests/output/ex15_transientvar.out /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex1.c /petsc/src/ts/examples/tutorials/autodiff/adr_ex1.cxx /petsc/src/ts/examples/tutorials/ex11_sa.c /petsc/src/ts/impls/bdf/bdf.c /petsc/src/ts/interface/ts.c /petsc/src/ts/trajectory/impls/basic/trajbasic.c /petsc/src/ts/trajectory/impls/memory/trajmemory.c /petsc/src/ts/trajectory/impls/singlefile/singlefile.c /petsc/src/ts/trajectory/impls/visualization/trajvisualization.c /petsc/src/ts/utils/dmts.c /petsc/src/vec/is/examples/tests/ex2.c /petsc/src/vec/is/is/impls/general/general.c /petsc/src/vec/is/is/interface/index.c /petsc/src/vec/is/sf/interface/ftn-custom/zsf.c /petsc/src/vec/is/utils/isio.c /petsc/src/vec/vec/examples/tests/ex20f.F /petsc/src/vec/vec/examples/tutorials/ex6.c /petsc/src/vec/vec/examples/tutorials/ex6f.F90 /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/interface/dlregisvec.c /petsc/src/vec/vec/utils/vecio.c
c4e82887	05-Mar-2020	Lisandro Dalcin <dalcinl@gmail.com>	MPI-IO: Add support for explicit offsets (MPI_File_{read\|write}_at[_all]) /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/fblaslapack.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/examples/arch-ci-linux-cuda-single-cxx.py /petsc/config/examples/arch-ci-linux-gcc-ifc-cmplx.py /petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py /petsc/config/examples/arch-ci-linux-opt-cxx-quad.py /petsc/config/examples/arch-ci-linux-pkgs-64idx.py /petsc/config/examples/arch-ci-linux-uni-pkgs.py /petsc/config/examples/arch-ci-osx-dbg.py /petsc/include/petsc/finclude/petscsys.h 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19caf8f3	21-Feb-2020	Satish Balay <balay@mcs.anl.gov>	Remove usage of PETSC_HAVE_FORTRAN_STDCALL, PETSC_BLASLAPACK_STDCALL, HAVE_FORTRAN_MIXED_STR_ARG flags - as Compaq f90 compiler is no longer supported /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/compilersFortran.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/cgns.py /petsc/config/BuildSystem/config/packages/eigen.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/regex.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/types.py 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b2706f25	19-Sep-2019	Richard Tran Mills <rmills@rmills.org>	Added reference to PetscFormatConvert() in the PetscPrintf() manual page. /petsc/.gitignore /petsc/.gitlab-ci.yml /petsc/.gitlab/CODEOWNERS /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compile/Cxx.py /petsc/config/BuildSystem/config/compile/FC.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/mkl_cpardiso.py 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296ae53d	10-Sep-2019	Barry Smith <bsmith@mcs.anl.gov>	Fix Fortran name-mangled bindings for petscbinaryread functions Commit-type: portability-fix Reported-by: gitlab-ci ftn-custom/zsysiof.c
18d1adef	06-Sep-2019	Barry Smith <bsmith@mcs.anl.gov>	Fix Fortran use of ** for negative base, add more F90 interfaces for PetscBinaryRead() Commit-type: portability-fix Reported-by: gitlab-ci /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/package.py /petsc/config/examples/arch-ci-linux-nagfor.py /petsc/src/sys/f90-mod/petscsysmod.F ftn-custom/zghomef.c ftn-custom/zmpiuopenf.c ftn-custom/zmprintf.c ftn-custom/zsysiof.c /petsc/src/ts/examples/tutorials/ex22f.F
a9acdec7	22-Aug-2019	Barry Smith <bsmith@mcs.anl.gov>	Many fixes to get PETSc and --download-fblaslapack working with nagfor compiler Works with --download-fblaslapack, --download-scalapack, --download-mpich (does not work with --download-mumps) Uses Many fixes to get PETSc and --download-fblaslapack working with nagfor compiler Works with --download-fblaslapack, --download-scalapack, --download-mpich (does not work with --download-mumps) Uses lib/petsc/bin/petscnagfor as wrapper compiler since nagfor cannot work natively with the PETSc/standard Unix build environment Required fixes/modernizations for BLAS/LAPACK source code (updated in the branch used by this branch, need to make it a tag when done) Found a couple of portability issues with PETSc mpif.h When package build fails they will no longer dump all the (huge amount) build output to the screeen Commit-type: portability-fix show more ... /petsc/.gitlab-ci.yml /petsc/CONTRIBUTING /petsc/README.md 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4c500f23	15-Aug-2019	Pierre Jolivet <pierre.jolivet@enseeiht.fr>	Typos. /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/eigen.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/fblaslapack.py /petsc/config/BuildSystem/config/packages/make.py 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52556f0f	14-Jul-2019	BarryFSmith <bsmith@mcs.anl.gov>	Merged in barry/cleanup-petscconf-h (pull request #1834) Remove testing and inserting into petscconf.h items that are not actually used by PETSc /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/headers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADOLC.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/cmake.py 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2475b7ca	30-Jun-2019	Barry Smith <bsmith@mcs.anl.gov>	Remove testing and inserting into petscconf.h items that are not actually used by PETSc 1) PETSC_HAVE_LIBXXXX - which was rarely used be careful with the package libpng and libjpeg since they hav Remove testing and inserting into petscconf.h items that are not actually used by PETSc 1) PETSC_HAVE_LIBXXXX - which was rarely used be careful with the package libpng and libjpeg since they have lib in the name of the package 2) various system include files that are never used or always exist: for example stdlib.h 3) various system functions that are never used or always exist 4) fixes for requires for MUMPS and SuperLU_DIST when dependent packages are installed or not installed (unrelated to the rest of this pull request) 5) packages that always exist such as PETSC_HAVE_BLASLAPACK, or are not used by PETSc such as PETSC_HAVE_NETCFD 6) remove a couple of uses of HAVE_LIB* in the code that were not needed by adjusting the configure code slightly 7) remove all the #if guards for each entry in petscconf.h since petscconf.h already has a guard and the values are never defined else where the extra guards just make the file cluttered For a build with about 10 external packages this reduced the size of petscconf.h from 1236 lines to 828/4 around 220 entries. Commit-type: style-fix, cleanup Reported-by: Jed Brown <jed@jedbrown.org show more ... /petsc/.travis.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/functions.py /petsc/config/BuildSystem/config/headers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/c2html.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/ctetgen.py 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57a5760d	02-Jul-2019	William Gropp <wgropp@illinois.edu>	Merge from doc-fixes branch /petsc/.travis.yml /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/Matlab.py /petsc/config/BuildSystem/config/packages/c2html.py /petsc/config/BuildSystem/config/packages/cmake.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/hdf5.py /petsc/config/BuildSystem/config/packages/lgrind.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/libraryOptions.py /petsc/config/examples/arch-c-exodus-dbg-builder.csh /petsc/config/examples/arch-cuda-double.csh /petsc/config/examples/arch-cuda-single.csh /petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py /petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py /petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py /petsc/config/examples/arch-linux-analyzer.py /petsc/config/examples/arch-linux-clang-avx.py /petsc/config/examples/arch-linux-cmplx-gcov.py /petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py /petsc/config/examples/arch-linux-gcc-cxx-avx2.py /petsc/config/examples/arch-linux-knl.py /petsc/config/examples/arch-linux-opt-misc.py /petsc/config/examples/arch-linux-pgi.py /petsc/config/examples/arch-linux-pkgs-64idx.py /petsc/config/examples/arch-linux-pkgs-cxx-mlib.py /petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py /petsc/config/examples/arch-linux-pkgs-gcov.py /petsc/config/examples/arch-linux-pkgs-opt.py /petsc/config/examples/arch-linux-pkgs-valgrind.py /petsc/config/examples/arch-olcf-summit-opt.csh 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580bdb30	07-Jun-2019	Barry Smith <bsmith@mcs.anl.gov>	Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms Replace a couple multi-mallocs with a single malloc Replace backwards loops in MatSetValues_() Add PetscArraycmp(), PetscArraycpy(), PetscArrayzero(), PetscArraymove(), update code to use new forms Replace a couple multi-mallocs with a single malloc Replace backwards loops in MatSetValues_() with PetscArraymove() Commit-type: style-fix, feature show more ... /petsc/.gitmessage /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/hdf5.py 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