Update the use of Collective on in the manual pages to reflect the new style

Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>

Man pages: remove Concepts: fields

These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209

Remove these fields from all man pages (but

Man pages: remove Concepts: fields

These fields were previously stripped from the man pages by logic removed in
21a59cba2737d49dc2f0bd12c08db0d2a3f3f209

Remove these fields from all man pages (but not from examples).

This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.

find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find src -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/ {N; /\n\s*$/d}' {} +
find include -type f -not -path "*/examples/*" -not -name "*.html" -not -name "*.bib" -exec gsed -i '/Concepts:/d' {} +

Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed

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Add PetscBinaryBigEndian() for runtime detection of endianness

Rename the variable max_retry_time

fdir.c edited online with Bitbucket

Revert "PetscMkdtemp: remove duplicate copies"

This reverts commit 5896fb9e39e84ae2eb743f82d9026350ea94629a.

_mktemp_s takes a template as input, if it fails - we need to copy the template again

S

Revert "PetscMkdtemp: remove duplicate copies"

This reverts commit 5896fb9e39e84ae2eb743f82d9026350ea94629a.

_mktemp_s takes a template as input, if it fails - we need to copy the template again

Suggested-by: "Zhang, Hong" <hongzhang@anl.gov>

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PetscMkdtemp: remove duplicate copies

Suggested-by: "Smith, Barry F." <bsmith@mcs.anl.gov>

Merged in hongzh/improve-tstrajectory-folder (pull request #1673)

Generate unique folder names for TSTrajectory

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emcon

Merged in hongzh/improve-tstrajectory-folder (pull request #1673)

Generate unique folder names for TSTrajectory

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Emil Constantinescu <emconsta@mcs.anl.gov>
Approved-by: Stefano Zampini <stefano.zampini@gmail.com>

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fix PetscStrncpy() usage.

Suggested-by: "Smith, Barry F." <bsmith@mcs.anl.gov>

Add windows support for PetscMkdtemp

Funded-by:
Project: FASTMath adjoint
Time: 1.0 hours
Reported-by:
Thanks-to:

Generate unique folder names for TSTrajectory

- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c

Funded-by:
Project: FASTMATH adjoint
Ti

Generate unique folder names for TSTrajectory

- Added PetscMkdtemp()
- Removed -ts_trajectory_dirname in tests
- The changes are also applied to trajmemory.c

Funded-by:
Project: FASTMATH adjoint
Time: 6.5 hours
Reported-by:
Thanks-to:

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Binary I/O: Various fixes and enhancements

* Change PetscBinary[Synchronized]Read() to allow for reading
items up to EOF without erroring
* Fix PetscViewerBinaryRead() to properly return the numbe

Binary I/O: Various fixes and enhancements

* Change PetscBinary[Synchronized]Read() to allow for reading
items up to EOF without erroring
* Fix PetscViewerBinaryRead() to properly return the number of items read
* Fix PetscViewerRead() to prevent infinite loops at EOF
* Various fixes for PetscDataType PETSC_COMPLEX

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PetscDataType: Add support for PETSC_INT64

* Implement PetscDataType <-> MPI_Datatype conversion
* Implement ASCII and binary IO

IO: Implement read and byte swapping for PETSC_LONG