Fix cast usage based on nightlies

PetscFunctionListGet: revert const change

Fixes for use of PetscMallocN() with const type input

Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function

Commit-type: portability-fix, testing-fix

Fixes for use of PetscMallocN() with const type input

Microsoft compilers warn about incompatiblity between pointers passed to new PetscMallocA() function

Commit-type: portability-fix, testing-fix
Reported-by: nightly tests

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PetscContainer: add Default destroy routine for contexts obtained with PetscMalloc

Cannot convert from MPI_INT to PetscDataType,

Commit-type: bug-fix
Reported-by: Jed Brown <jed@jedbrown.org>

fix: redundant CHKERRQ() call after SETERRQ()

Craycc complained about a stray CHKERRQ after SETERRQ in plextree.c
Reported-by: Patrick Sanan <patrick.sanan@gmail.com>

release: set v3.8 strings

doc: fixes

PetscMallocA: implement the Malloc[1-7] suite using variadic function

The macros had become increasingly complicated and were opaque to debug.
It also prevented run-time choice of coalesced malloc,

PetscMallocA: implement the Malloc[1-7] suite using variadic function

The macros had become increasingly complicated and were opaque to debug.
It also prevented run-time choice of coalesced malloc, which is now
available via -malloc_coalesce which is useful to debug memory leaks due
to mismatched PetscMalloc3/PetscFree2 and the like. This implementation
dispatches to a single variadic function that handles allocation for
both PetscMalloc[1-7] and PetscCalloc[1-7], as well as a matching
case for freeing memory.

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Merge remote-tracking branch 'origin/barry/fix-log_view'

When -log_view was not indicated certain global variables not freed at end of run

Commit-type: testing-fix
Funded-by: ECP
Time: .4 hours
Reported-by: nightly tests
Thanks-to: Satish Balay <balay@

When -log_view was not indicated certain global variables not freed at end of run

Commit-type: testing-fix
Funded-by: ECP
Time: .4 hours
Reported-by: nightly tests
Thanks-to: Satish Balay <balay@mcs.anl.gov>

Development Tools: Vim, Emacs, Eclipse

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fix arch-linux-opt-cxx-quad build errors

Fix destruction of global objects so they are not listed as not freed when -log_view is used

Commit-type: bug fix
Reported-by: Stefano Zampini <stefano.zampini@gmail.com>

Fix PetscFortranCallbackRegister() to not complain about corrupt ClassId

The argument classid should be allowed to be equal to PETSC_LARGEST_CLASSID
(that is, the last registered class). This proble

Fix PetscFortranCallbackRegister() to not complain about corrupt ClassId

The argument classid should be allowed to be equal to PETSC_LARGEST_CLASSID
(that is, the last registered class). This problem has not appeared in
PETSc because SNESInitializePackage() registers more than one class.

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Updates for checking for incompatible MPI libraries at runtime

Remove false positives due to MPI ABI initiative
No longer call hard abort() on incompatibility

I welcome constructive criticism on ho

Updates for checking for incompatible MPI libraries at runtime

Remove false positives due to MPI ABI initiative
No longer call hard abort() on incompatibility

I welcome constructive criticism on how to improve this

Commit-type: portability-fix, testing-fix,style-fix, feature
Thanks-to: jed@jedbrown.org, dalcinl@gmail.com, knepley@gmail.com

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Attempt to check at runtime if the MPI library used matches that from compile time

Apparently in Python based applications somehow the wrong MPI libraries may be used at
runtime, leading to difficul

Attempt to check at runtime if the MPI library used matches that from compile time

Apparently in Python based applications somehow the wrong MPI libraries may be used at
runtime, leading to difficult to debug situations.
I would think it would fail due to missing symbols but what do I know.
Commit-type: feature
Time: 2.5 hours
Reported-by: Jed Brown <jed@jedbrown.org>

Development Tools: Vim, Emacs, Eclipse

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Merge remote-tracking branch 'origin/barry/fix-dead-variables'

Merge remote-tracking branch 'origin/stefano_zampini/feature-glvis-viewer-fixdmdependency2'

Fix many dead assignments, mostly due to missing CHKERRQ(ierr);

Commit-type: style-fix
Reported-by: clang static analyzer

Merge remote-tracking branch 'origin/barry/feature-aij-subtypes'

Add subtype concept to SeqAIJ matrices

Introduced -mat_seqaij_type <seqaijperm, ...> MatSeqAIJSetType() to allow running code written for AIJ to work
with any subtype. See MatSeqAIJRegister() and Ma

Add subtype concept to SeqAIJ matrices

Introduced -mat_seqaij_type <seqaijperm, ...> MatSeqAIJSetType() to allow running code written for AIJ to work
with any subtype. See MatSeqAIJRegister() and MatSeqAIJRegisterAll() for registering new subtypes

Use

export PETSC_OPTIONS="-mat_seqaij_type seqaijperm -malloc_test"
make alltests

to run the entire test suite using an alternative subclass, in this case seqaijperm. This will produce output regarding the different name for
the matrix class but otherwise should produce no errors.

This was implemented to 1) allow easy testing of an MKL subtype and 2) to allow users to easily use the MKL subtype
without changing their code.

Also fixes several bugs in seqaijperm, if it isn't tested its broken.

Commit-type: testing-fix,style-fix, feature
Funded-by: ECP
Project: MKL
Time: 32 hours
Reported-by: Irina Sokolova <irina.sokolova@intel.com>

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configure: add option --with-fortran-bindings

Now one can use --with-fc=gfortran --with-fortran-bindings=0 to detect fortran compiler properly
[for externalpacakge use - for eg: scalapack] but avoid

configure: add option --with-fortran-bindings

Now one can use --with-fc=gfortran --with-fortran-bindings=0 to detect fortran compiler properly
[for externalpacakge use - for eg: scalapack] but avoid building PETSc fortran bindings in library and modules.

Also disable sowing when with-fortran-bindings is disabled

Fix makefiles (corresponding to fortran bindings) to consistantly use PETSC_HAVE_FORTRAN

Also remove unused PETSC_USE_FORTRAN_DATATYPES flag
Reported-by: Patrick Farrell <patrick.farrell@maths.ox.ac.uk>

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add PetscOptionsLeft() fortran interface

Thanks-to: Blaise A Bourdin <bourdin@lsu.edu>

add fortran interface for PetscDataTypeGetSize()

Reported-by: Blaise A Bourdin <bourdin@lsu.edu>

Merge remote-tracking branch 'origin/barry/fix-petscobjectcopyfortranfunctionpointers'