History log of /petsc/src/sys/objects/ (Results 901 – 925 of 2473)
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90ea27d828-Sep-2019 Satish Balay <balay@mcs.anl.gov>

doc fixes


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/examples/arch-ci-linux-c-exodus-dbg.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/include/petsccharacteristic.h
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/linearsolvertable.html
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/mat/examples/tests/ex34.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex34.out
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpimattransposematmult.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_nc_singular_2d_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_singular_2d_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_singular_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_hpddm_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_parmetis_hpddm_baij.out
init.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vscat/examples/ex8.c
eb02082b25-Sep-2019 Junchao Zhang <jczhang@mcs.anl.gov>

Added SF GPU support


/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
/petsc/.gitmessage
/petsc/config/BuildSystem/config/atomics.py
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilerFlags.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/compilersFortran.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/headers.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/SAMRAI.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/cxxlibs.py
/petsc/config/BuildSystem/config/packages/flibs.py
/petsc/config/BuildSystem/config/packages/hdf5.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/mkl_sparse.py
/petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py
/petsc/config/BuildSystem/config/packages/mpi4py.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/sourceControl.py
/petsc/config/BuildSystem/config/utilities/cacheDetails.py
/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py
/petsc/config/BuildSystem/graph.py
/petsc/config/BuildSystem/script.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/languages.py
/petsc/config/PETSc/options/scalarTypes.py
/petsc/config/configure.py
/petsc/config/examples/arch-ci-linux-pkgs-opt.py
/petsc/config/examples/arch-ci-opensolaris-cmplx-pkgs-dbg.py
/petsc/config/gmakegentest.py
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petsc/private/petschpddm.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/vecscatterimpl.h
/petsc/include/petscctable.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petscvec.h
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/makefile
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/examples/tutorials/ex1.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_distribute_overlap.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_1d_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-2_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_refine_overlap_2d_nsize-8_overlap-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_18.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_9.out
/petsc/src/dm/impls/plex/examples/tutorials/ex9.c
/petsc/src/dm/impls/plex/examples/tutorials/output/ex9_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex9_1.out
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexhpddm.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/swarm/swarmpic_plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/35.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/documentation/linearsolvertable.html
/petsc/src/ksp/ksp/examples/tests/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex74.c
/petsc/src/ksp/ksp/examples/tutorials/ex75.c
/petsc/src/ksp/ksp/examples/tutorials/ex76.c
/petsc/src/ksp/ksp/examples/tutorials/ex9.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_aij_dmda_preall.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_cusparse.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_cuda_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_cuda_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-0_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex75_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex75_1_icc.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex75_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex75_2_icc.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_fgmres_geneo_20_p_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_fgmres_geneo_20_p_2_geneo_pc_hpddm_levels_2_eps_nev-20.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_fgmres_geneo_20_p_2_geneo_pc_hpddm_levels_2_eps_nev-5.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_geneo_pc_hpddm_levels_1_eps_nev-10.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_geneo_pc_hpddm_levels_1_eps_nev-15.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex76_geneo_pc_hpddm_levels_1_eps_nev-5.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex9_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex9_hpddm_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex9_hpddm_cg.out
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/impls/hpddm/makefile
/petsc/src/ksp/ksp/impls/makefile
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/chowiluviennacl/chowiluviennacl.cxx
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/hpddm/hpddm.cxx
/petsc/src/ksp/pc/impls/hpddm/makefile
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/makefile
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/rowscalingviennacl/rowscalingviennacl.cxx
/petsc/src/ksp/pc/impls/saviennacl/saviennacl.cxx
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/mat/examples/tests/ex192.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matreg.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/utils/factorschur.c
/petsc/src/mat/utils/freespace.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex24.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex63.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/ex71.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/snes/examples/tutorials/output/ex12_glvis_2d_hex_p0.out
/petsc/src/snes/examples/tutorials/output/ex12_glvis_2d_tet_p0.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_p4est_nc_singular_2d.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_p4est_singular_2d.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_quad_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_quad_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_quad_reuse_threshold.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_quad_reuse_threshold_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_quad_singular.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_tri_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_tri_parmetis_baij.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_tri_reuse.out
/petsc/src/snes/examples/tutorials/output/ex12_pchpddm_tri_reuse_baij.out
/petsc/src/snes/examples/tutorials/output/ex56_hpddm.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_alt.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/interface/noise/snesdnest.c
/petsc/src/snes/interface/noise/snesnoise.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/utils/dmlocalsnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/fsrc/somefort.F
pinit.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/sys/utils/pbarrier.c
/petsc/src/sys/utils/psplit.c
/petsc/src/sys/utils/sorti.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/examples/tutorials/ex1.c
/petsc/src/tao/examples/tutorials/ex2.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/ex46.c
/petsc/src/ts/examples/tutorials/ex47.c
/petsc/src/ts/examples/tutorials/ex48.c
/petsc/src/ts/examples/tutorials/output/ex20opt_p_2.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/allgather/sfallgather.c
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.c
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h
/petsc/src/vec/is/sf/impls/basic/alltoall/sfalltoall.c
/petsc/src/vec/is/sf/impls/basic/cuda/makefile
/petsc/src/vec/is/sf/impls/basic/cuda/sfpackcuda.cu
/petsc/src/vec/is/sf/impls/basic/gather/sfgather.c
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.c
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.h
/petsc/src/vec/is/sf/impls/basic/makefile
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.h
/petsc/src/vec/is/sf/impls/basic/sfpack.c
/petsc/src/vec/is/sf/impls/basic/sfpack.h
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/sftype.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/examples/tutorials/output/ex9_2.out
/petsc/src/vec/vec/impls/mpi/commonmpvec.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
/petsc/src/vec/vec/impls/node/vecnode.c
/petsc/src/vec/vec/impls/node/vecnodeimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vscat/examples/ex1.c
/petsc/src/vec/vscat/examples/ex2.c
/petsc/src/vec/vscat/examples/ex3.c
/petsc/src/vec/vscat/examples/ex4.c
/petsc/src/vec/vscat/impls/mpi3/makefile
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
/petsc/src/vec/vscat/impls/seq/seqvscat.c
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/impls/vscat.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscatfce.c
/petsc/src/vec/vscat/interface/vscreate.c
3bbda9c221-Sep-2019 Stefano Zampini <stefano.zampini@gmail.com>

CUSOLVER: move handle initialization to PetscInitialize


/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/configure.py
/petsc/config/example_template.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/config/examples/arch-ci-linux-opt-misc.py
/petsc/config/gmakegentest.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/config/testparse.py
/petsc/gmakefile.test
/petsc/include/petsc.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsccublas.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/include/petscvec.h
/petsc/lib/petsc/bin/maint/testharness_util.py
/petsc/lib/petsc/conf/test.common
/petsc/makefile
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/examples/tests/ex8.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex8_glvis.out
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/dm/label/examples/tutorials/ex1.c
/petsc/src/dm/label/examples/tutorials/output/ex1_0.out
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex74.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/mat/examples/tests/ex1.c
/petsc/src/mat/examples/tests/ex116.c
/petsc/src/mat/examples/tests/ex185.c
/petsc/src/mat/examples/tests/ex230.c
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/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex33.out
/petsc/src/mat/examples/tests/output/ex33_3.out
/petsc/src/mat/examples/tutorials/ex9.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/dense/seq/dense.h
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/factorschur.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex24.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/ex30.c
/petsc/src/snes/examples/tutorials/ex42.c
/petsc/src/snes/examples/tutorials/ex46.c
/petsc/src/snes/examples/tutorials/ex47cu.cu
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex63.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/ex71.c
/petsc/src/snes/examples/tutorials/ex75.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex46_1_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex56_cuda.out
/petsc/src/snes/impls/nasm/aspin.c
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/impls/glvis/glvis.c
/petsc/src/sys/fileio/mprint.c
init.c
/petsc/src/tao/examples/tutorials/output/ex4_hessian_2_alt.out
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/multirate/ex5.c
/petsc/src/ts/examples/tutorials/multirate/ex6.c
/petsc/src/ts/examples/tutorials/multirate/ex7.c
/petsc/src/ts/examples/tutorials/multirate/ex8.c
/petsc/src/ts/examples/tutorials/output/ex20opt_p_4.out
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/utils/ftn-custom/zvsectionisf.c
/petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/vecglvis.c
9d90e77919-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Clarify what happens if -cuda_initialize no is used

Commit-type: documentation
Reported-by: Junchao Zhang <jczhang@mcs.anl.gov>

ed0ed7c619-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'master' into 'barry/2019-08-22/fix-fblaslapack-for-nag'

# Conflicts:
# lib/petsc/conf/test


/petsc/.gitignore
/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compile/Cxx.py
/petsc/config/BuildSystem/config/compile/FC.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/BuildSystem/config/packages/hdf5.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/mkl_cpardiso.py
/petsc/config/BuildSystem/config/packages/mkl_pardiso.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py
/petsc/config/examples/arch-ci-linux-nagfor.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdt.h
/petsc/include/petscerror.h
/petsc/include/petscfetypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscpc.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/test
/petsc/src/dm/dt/dualspace/impls/bdm/makefile
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/petsc/src/dm/dt/dualspace/impls/simple/dspacesimple.c
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/petsc/src/dm/dt/dualspace/interface/dualspace.c
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/petsc/src/dm/dt/fe/impls/basic/febasic.c
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/petsc/src/dm/dt/fe/impls/composite/fecomposite.c
/petsc/src/dm/dt/fe/impls/composite/makefile
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
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/petsc/src/dm/dt/fe/interface/fegeom.c
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/petsc/src/dm/dt/space/impls/point/spacepoint.c
/petsc/src/dm/dt/space/impls/poly/makefile
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/subspace/makefile
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/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/makefile
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/dt/space/makefile
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_16.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/manualpages-sec/header_DMPATCH
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/petsc/src/docs/manualpages-sec/header_SPACE
/petsc/src/docs/tex/manual/manual.tex
/petsc/src/docs/tex/manual/manualpreamble.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/developers/index.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/documentation/index.html
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/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex4.c
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/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hmg/hmg.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/examples/tests/ex125.c
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/petsc/src/mat/examples/tests/output/ex240_1.out
/petsc/src/mat/examples/tests/output/ex240_2.out
/petsc/src/mat/examples/tutorials/ex10.c
/petsc/src/mat/examples/tutorials/ex3.c
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_hdf5_tiny.out
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_rect_hdf5.out
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/petsc/src/mat/examples/tutorials/output/ex10_mpidense_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_rect_hdf5.out
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/baij/mpi/mmbaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijfact81.c
/petsc/src/mat/impls/kaij/kaij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/snes/examples/tests/ex1.c
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/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex19.c
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/petsc/src/snes/examples/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_ml.out
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/petsc/src/snes/examples/tutorials/output/ex56_bddc_elast.out
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/petsc/src/snes/examples/tutorials/output/ex56_fetidp_elast.out
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/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/impls/gs/gssecant.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/impls/tr/trimpl.h
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/viewer/impls/string/stringv.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errstop.c
/petsc/src/sys/error/errtrace.c
/petsc/src/sys/examples/tests/ex25.c
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/sys/examples/tests/output/ex25_1.out
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fileio/ftn-custom/zghomef.c
/petsc/src/sys/fileio/ftn-custom/zmpiuopenf.c
/petsc/src/sys/fileio/ftn-custom/zmprintf.c
/petsc/src/sys/fileio/ftn-custom/zsysiof.c
/petsc/src/sys/memory/ftn-custom/zmtrf.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mhbw.c
/petsc/src/sys/memory/mtr.c
init.c
pinit.c
state.c
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e6526db916-Sep-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2019-09-04/feature-nan-malloc' into 'master'

Add code to initialize PetscMalloc() memory with Nan. Simplify and clarify the...

See merge request petsc/petsc!2017


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/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/output/ex49_1.out
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79dccf8211-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Fixed spelling mistakes, removed out-dated references to PetscMalloc() options and functions, added PetscMalloc() changes to dev.html

Commit-type: style-fix, documentation
Reported-by: Jed Brown <je

Fixed spelling mistakes, removed out-dated references to PetscMalloc() options and functions, added PetscMalloc() changes to dev.html

Commit-type: style-fix, documentation
Reported-by: Jed Brown <jed@jedbrown.org>

show more ...

244bdbcc06-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Removed set but unused variable

Commit-type: style-fix
Reported-by: gitlab-ci

c94eee0806-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Fix spelling of ID to Id so that bfort generates correct code

Commit-type: bug-fix
Reported-by: gitlab-ci

92f119d606-Sep-2019 Barry Smith <bsmith@mcs.anl.gov>

Add code to initialize PetscMalloc() memory with Nan. Simplify and clarify the options for controlling PetscMalloc() debugging.

This now trivially detects an error that lay undetected in ts/examples

Add code to initialize PetscMalloc() memory with Nan. Simplify and clarify the options for controlling PetscMalloc() debugging.

This now trivially detects an error that lay undetected in ts/examples/tutorials/multistage/ex5.c for months

Commit-type: style-fix, feature, documentation

show more ...


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/petsc/src/vec/is/is/examples/tests/output/ex10_1_start--2_end-6.out
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start-4_end-2.out
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start-4_end-6.out
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/utils/ftn-custom/zhdf5io.c
/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/utils/vecio.c
a9acdec722-Aug-2019 Barry Smith <bsmith@mcs.anl.gov>

Many fixes to get PETSc and --download-fblaslapack working with nagfor compiler

Works with --download-fblaslapack, --download-scalapack, --download-mpich (does not work with --download-mumps)

Uses

Many fixes to get PETSc and --download-fblaslapack working with nagfor compiler

Works with --download-fblaslapack, --download-scalapack, --download-mpich (does not work with --download-mumps)

Uses lib/petsc/bin/petscnagfor as wrapper compiler since nagfor cannot work natively with the PETSc/standard Unix build environment

Required fixes/modernizations for BLAS/LAPACK source code (updated in the branch used by this branch, need to make it a tag when done)

Found a couple of portability issues with PETSc mpif.h

When package build fails they will no longer dump all the (huge amount) build output to the screeen

Commit-type: portability-fix

show more ...


/petsc/.gitlab-ci.yml
/petsc/CONTRIBUTING
/petsc/README.md
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/compilers.py
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/petsc/config/BuildSystem/config/package.py
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/petsc/config/BuildSystem/config/packages/BlasLapack.py
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/petsc/config/BuildSystem/config/packages/scalapack.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/script.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/arch.py
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/petsc/config/PETSc/options/languages.py
/petsc/config/PETSc/options/memAlign.py
/petsc/config/configure.py
/petsc/config/examples/arch-ci-freebsd-c-single-opt.py
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/petsc/config/examples/arch-ci-linux-xsdk-dbg.py
/petsc/config/examples/arch-ci-mswin-intel-cxx-cmplx.py
/petsc/config/examples/arch-ci-mswin-intel.py
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/petsc/config/examples/arch-ci-opensolaris-cmplx-pkgs-dbg.py
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/petsc/config/examples/arch-ci-opensolaris-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-dbg.py
/petsc/config/examples/arch-ci-osx-prefix.py
/petsc/config/examples/arch-ci-osx-xsdk-opt.py
/petsc/config/examples/tmp/arch-c-exodus-dbg-builder.csh
/petsc/config/examples/tmp/arch-ci-mswin-cxx-complex-dbg.py
/petsc/config/examples/tmp/arch-ci-mswin-double-opt.py
/petsc/config/examples/tmp/arch-ci-osx-cxx-pkgs-opt.py
/petsc/config/examples/tmp/arch-cuda-double.csh
/petsc/config/examples/tmp/arch-cuda-single.csh
/petsc/config/examples/tmp/arch-freebsd-cxx-pkgs-opt.csh
/petsc/config/examples/tmp/arch-linux-c89.py
/petsc/config/examples/tmp/arch-linux-cmplx-gcov.csh
/petsc/config/examples/tmp/arch-linux-dbg-quad.py
/petsc/config/examples/tmp/arch-linux-pkgs-cxx-mlib.csh
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/petsc/config/examples/tmp/arch-osx-10.6-cxx-pkgs-opt.csh
/petsc/config/examples/tmp/arch-osx-pgi-pkgs-opt.py
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/petsc/lib/petsc/bin/maint/petsc-val.supp
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/petsc/src/dm/impls/network/network.c
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/petsc/src/mat/f90-mod/petscmat.h90
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/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tests/ex69.c
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/petsc/src/snes/examples/tutorials/ex5f.F90
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/petsc/src/snes/impls/patch/snespatch.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/error/examples/tests/ex2.c
/petsc/src/sys/examples/tests/ex1.c
/petsc/src/sys/examples/tests/ex2.c
/petsc/src/sys/examples/tests/ex3.c
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/petsc/src/sys/examples/tutorials/ex5.c
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fileio/ftn-custom/zsysiof.c
/petsc/src/sys/fileio/sysio.c
init.c
/petsc/src/sys/python/pythonsys.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut2.c
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1_alt_5.out
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/ex11.c
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/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/ex26.c
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/petsc/src/ts/examples/tutorials/multirate/output/ex6_1_alt.out
/petsc/src/ts/examples/tutorials/multirate/output/ex7_1_alt.out
/petsc/src/ts/examples/tutorials/multirate/output/ex7_3_alt.out
/petsc/src/ts/examples/tutorials/optimal_control/ex1.c
/petsc/src/ts/examples/tutorials/output/ex31_4_alt_2.out
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/vec/is/is/examples/tests/ex10.c
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start--2_end-2.out
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start--2_end-6.out
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start-4_end-2.out
/petsc/src/vec/is/is/examples/tests/output/ex10_1_start-4_end-6.out
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/utils/ftn-custom/zhdf5io.c
/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/utils/vecio.c
bdaf1dae21-Aug-2019 Barry Smith <bsmith@mcs.anl.gov>

Added MatFDColoringSetValues() takes matrix in compressed color form (as often used by AD codes) into a PETSc Mat

Added PetscObjectCompareId()

Commit-type: feature
Reported-by: Hong Zhang <hongzhan

Added MatFDColoringSetValues() takes matrix in compressed color form (as often used by AD codes) into a PETSc Mat

Added PetscObjectCompareId()

Commit-type: feature
Reported-by: Hong Zhang <hongzhang@anl.gov>

show more ...


/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/openmp.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petsclayouthdf5.h
/petsc/include/petscmat.h
/petsc/lib/petsc/bin/extract.py
/petsc/lib/petsc/conf/rules
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexhdf5xdmf.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmresimpl.h
/petsc/src/mat/examples/tests/ex235.c
/petsc/src/mat/examples/tests/ex240.c
/petsc/src/mat/examples/tests/output/ex230_1.out
/petsc/src/mat/examples/tests/output/ex235_1.out
/petsc/src/mat/examples/tests/output/ex240_1.out
/petsc/src/mat/examples/tests/output/ex240_2.out
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijhdf5.c
/petsc/src/mat/impls/dense/seq/densehdf5.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/mffd/mffdimpl.h
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/matfd/fdmatrix.c
/petsc/src/snes/examples/tests/ex69.c
/petsc/src/snes/examples/tests/ex7.c
/petsc/src/snes/examples/tests/output/ex7_3.out
/petsc/src/snes/examples/tests/output/ex7_3_alt.out
/petsc/src/snes/examples/tests/output/ex7_4.out
/petsc/src/snes/examples/tests/output/ex7_4_alt.out
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/ex21.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex5f.F90
/petsc/src/snes/examples/tutorials/ex5f90.F90
/petsc/src/snes/examples/tutorials/ex5f90t.F90
/petsc/src/snes/examples/tutorials/output/ex17_2d_p1_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p2_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p3_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q1_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q2_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q3_axial_elas.out
/petsc/src/snes/examples/tutorials/output/ex19_10.out
/petsc/src/snes/examples/tutorials/output/ex19_13.out
/petsc/src/snes/examples/tutorials/output/ex19_6.out
/petsc/src/snes/examples/tutorials/output/ex19_7.out
/petsc/src/snes/examples/tutorials/output/ex19_8.out
/petsc/src/snes/examples/tutorials/output/ex19_9.out
/petsc/src/snes/examples/tutorials/output/ex19_bcgsl.out
/petsc/src/snes/examples/tutorials/output/ex19_ibcgs.out
/petsc/src/snes/examples/tutorials/output/ex19_kaczmarz.out
/petsc/src/snes/examples/tutorials/output/ex19_mpibaijmkl.out
/petsc/src/snes/examples/tutorials/output/ex19_ngmres_fas_ms.out
/petsc/src/snes/examples/tutorials/output/ex19_ngs.out
/petsc/src/snes/examples/tutorials/output/ex19_ngs_fd.out
/petsc/src/snes/examples/tutorials/output/ex19_parms.out
/petsc/src/snes/examples/tutorials/output/ex19_parms_alt.out
/petsc/src/snes/examples/tutorials/output/ex19_parms_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex19_seqbaijmkl.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3_alt.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8_alt.out
/petsc/src/snes/examples/tutorials/output/ex19_umfpack.out
/petsc/src/snes/examples/tutorials/output/ex40f90_1.out
/petsc/src/snes/examples/tutorials/output/ex46_1.out
/petsc/src/snes/examples/tutorials/output/ex46_1_alt.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc.out
/petsc/src/snes/examples/tutorials/output/ex56_bddc_elast.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp.out
/petsc/src/snes/examples/tutorials/output/ex56_fetidp_elast.out
/petsc/src/snes/examples/tutorials/output/ex5_1.out
/petsc/src/snes/examples/tutorials/output/ex5_2.out
/petsc/src/snes/examples/tutorials/output/ex5_2_alt.out
/petsc/src/snes/examples/tutorials/output/ex5_3.out
/petsc/src/snes/examples/tutorials/output/ex5_4.out
/petsc/src/snes/examples/tutorials/output/ex5_4_alt.out
/petsc/src/snes/examples/tutorials/output/ex5_5_aspin.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_0.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_1.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_2.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_3.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_4.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_5.out
/petsc/src/snes/examples/tutorials/output/ex5_asm_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_0.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_1.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_2.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_3.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_4.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_5.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_5_alt.out
/petsc/src/snes/interface/snes.c
/petsc/src/snes/mf/snesmfj.c
state.c
/petsc/src/ts/examples/tutorials/ex26.c
/petsc/src/ts/examples/tutorials/ex7.c
/petsc/src/ts/examples/tutorials/power_grid/ex7.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/ftn-custom/zhdf5io.c
/petsc/src/vec/is/utils/hdf5io.c
/petsc/src/vec/is/utils/isio.c
/petsc/src/vec/vec/utils/vecio.c
4c500f2315-Aug-2019 Pierre Jolivet <pierre.jolivet@enseeiht.fr>

Typos.


/petsc/.travis.yml
/petsc/bitbucket-pipelines.yml
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/exodusii.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/scalapack.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/arch.py
/petsc/config/configure.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
/petsc/config/examples/arch-pardiso.py
/petsc/gmakefile
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/include/petsc/private/dmstagimpl.h
/petsc/include/petsc/private/kernels/blockinvert.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsccxxcomplexfix.h
/petsc/include/petscdm.h
/petsc/include/petscdmnetwork.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmstag.h
/petsc/include/petscerror.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petscvec.h
/petsc/include/petscviewerhdf5.h
/petsc/lib/petsc/bin/maint/buildtest
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/lib/petsc/conf/test
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/hybrid_hexwedge.exo
/petsc/share/petsc/datafiles/meshes/hybrid_hexwedge.msh
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/benchmarks/streams/OpenMPVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/benchmarks/streams/process.py
/petsc/src/dm/dt/fe/impls/opencl/feopencl.c
/petsc/src/dm/examples/tests/ex1f.F90
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex1f_1.out
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/examples/tutorials/ex20.c
/petsc/src/dm/examples/tutorials/ex21.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/examples/tests/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex24.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex27.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex32.c
/petsc/src/dm/impls/plex/examples/tests/ex36.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tests/output/ex18_1_1d_dist1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_1_quad_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_1_quad_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_1_tri_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_1_tri_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_2a.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_2b.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_2c.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_4_hex_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_4_hex_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_4_tet_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_4_tet_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_repart.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_repart_ppu.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_seqload.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_seqload_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_hdf5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_hdf5_repart.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_hdf5_repart_ppu.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_hdf5_seqload.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_hdf5_seqload_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_exodus_17_hyb3d_interp_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_17_hyb3d_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_17_hyb3d_interp_ascii.out
/petsc/src/dm/impls/plex/examples/tests/output/ex36_0.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex5.c
/petsc/src/dm/impls/plex/examples/tutorials/ex6.c
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/examples/tutorials/ex8.c
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_9_hdf5.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_9_hdf5_repart.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_9_hdf5_repart_ppu.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_9_hdf5_seqload.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_9_hdf5_seqload_metis.out
/petsc/src/dm/impls/plex/ftn-custom/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexindices.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexmed.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpoint.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/stag/examples/tests/ex1.c
/petsc/src/dm/impls/stag/examples/tests/ex10.c
/petsc/src/dm/impls/stag/examples/tests/ex13.c
/petsc/src/dm/impls/stag/examples/tests/makefile
/petsc/src/dm/impls/stag/examples/tests/output/ex10_7.out
/petsc/src/dm/impls/stag/examples/tests/output/ex13_ghosted_1d_par_stag_stencil_width-0.out
/petsc/src/dm/impls/stag/examples/tests/output/ex13_ghosted_1d_par_stag_stencil_width-1.out
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1c97e7bc18-Jul-2019 Karl Rupp <me@karlrupp.net>

Merge branch 'balay/update-solaris-mpich' [PR #1856]

* balay/update-solaris-mpich:
mpich: update opensolaris from using mpich-3.3a2 to mpich-3.3.1


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/petsc/config/petsc_harness.sh
/petsc/gmakefile.test
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/lib/petsc/conf/test
/petsc/share/petsc/datafiles/meshes/hybrid_3d_cube.msh
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/moab/examples/tests/ex3.cxx
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_hyb_s2t.out
/petsc/src/dm/impls/plex/examples/tutorials/ex3f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex5.c
/petsc/src/dm/impls/plex/examples/tutorials/output/ex3f90_0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-1_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-1_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-1_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-1_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-2_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-2_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-2_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-2_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-4_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-4_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-4_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-4_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-8_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-8_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-8_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2_nsize-8_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-1_format-hdf5_viz.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-1_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-2_format-hdf5_viz.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-2_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-4_format-hdf5_viz.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-4_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-8_format-hdf5_viz.out
/petsc/src/dm/impls/plex/examples/tutorials/output/ex5_2a_nsize-8_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/stag/examples/tests/ex1.c
/petsc/src/dm/impls/stag/examples/tests/ex10.c
/petsc/src/dm/impls/stag/examples/tests/ex11.c
/petsc/src/dm/impls/stag/examples/tests/ex12.c
/petsc/src/dm/impls/stag/examples/tests/ex2.c
/petsc/src/dm/impls/stag/examples/tests/ex3.c
/petsc/src/dm/impls/stag/examples/tests/ex5.c
/petsc/src/dm/impls/stag/examples/tests/ex6.c
/petsc/src/dm/impls/stag/examples/tests/ex7.c
/petsc/src/dm/impls/stag/examples/tests/ex8.c
/petsc/src/dm/impls/stag/examples/tests/ex9.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/snes/f90-mod/petscsnes.h
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/sys/examples/tests/ex47.c
/petsc/src/sys/examples/tests/ex47f.F90
/petsc/src/sys/examples/tests/ex48f90.F90
/petsc/src/sys/examples/tests/output/ex47_1.out
/petsc/src/sys/examples/tests/output/ex47_2.out
/petsc/src/sys/examples/tests/output/ex48f90_1.out
/petsc/src/sys/examples/tests/output/ex48f90_2.out
ftn-custom/zstart.c
pinit.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/ts/examples/tests/ex21.c
/petsc/src/ts/examples/tests/output/ex21_1_bdf_ngmres_fas_ms.out
/petsc/src/ts/examples/tests/output/ex21_1_bdf_ngmres_fas_ngs.out
/petsc/src/ts/examples/tests/output/ex21_2_bdf_ngmres_fas_ms.out
/petsc/src/ts/examples/tests/output/ex21_2_bdf_ngmres_fas_ngs.out
/petsc/src/ts/impls/bdf/bdf.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
4dfee71308-Jul-2019 Satish Balay <balay@mcs.anl.gov>

mpich: update opensolaris builds of PETSc from using mpich-3.3a2 to mpich-3.3.1

The MPICH 3.3.1 HWLOC component with Solaris compilers and optimization -O hangs while calling MPI.

The fix suggested

mpich: update opensolaris builds of PETSc from using mpich-3.3a2 to mpich-3.3.1

The MPICH 3.3.1 HWLOC component with Solaris compilers and optimization -O hangs while calling MPI.

The fix suggested is to set HWLOC_COMPONENTS="-x86" in the environment

This is handled in PETSc by
1) setting the HWLOC_COMPONENTS="-x86" in configure before testing the MPI to prevent hangs during configure
1a) having configure print a warning that setting this environmental variable may be needed to prevent hangs in
running code
2) having PetscInitialize() set HWLOC_COMPONENTS="-x86" so the user does not have to, which handles most cases
except those where the user directly calls MPI_Init() and for that we have the warning at configure time
(can't have the warning at run time because the user calls MPI_Init() before they get to PETSc code.

Requested-by: Junchao Zhang <jczhang@mcs.anl.gov>
Thanks-to: Satish Balay <balay@mcs.anl.gov>
Thanks-to: Jed Brown <jed@jedbrown.org>

show more ...


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/programs.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-linux-pgi.py
/petsc/config/examples/arch-opensolaris-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-opensolaris-misc.py
/petsc/include/petsc/finclude/petscao.h
/petsc/include/petsc/finclude/petscbag.h
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/finclude/petscdmda.h
/petsc/include/petsc/finclude/petscdmlabel.h
/petsc/include/petsc/finclude/petscdmnetwork.h
/petsc/include/petsc/finclude/petscdmplex.h
/petsc/include/petsc/finclude/petscdraw.h
/petsc/include/petsc/finclude/petscerror.h
/petsc/include/petsc/finclude/petscis.h
/petsc/include/petsc/finclude/petscksp.h
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petsc/finclude/petscsnesfas.h
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/finclude/petscts.h
/petsc/include/petsc/finclude/petscvec.h
/petsc/include/petsc/finclude/petscviewer.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/mpiuni/mpiunifdef.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/f90impl.h
/petsc/include/petsc/private/fortranimpl.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashmapi.h
/petsc/include/petsc/private/hashmapij.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/hashseti.h
/petsc/include/petsc/private/hashsetij.h
/petsc/include/petsc/private/hashtable.h
/petsc/include/petsc/private/petscconvestimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscfvimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscbt.h
/petsc/include/petsccharacteristic.h
/petsc/include/petscconvest.h
/petsc/include/petscctable.h
/petsc/include/petsccuda.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmcomposite.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmnetwork.h
/petsc/include/petscdmpatch.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmredundant.h
/petsc/include/petscdmshell.h
/petsc/include/petscdmsliced.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdstypes.h
/petsc/include/petscdt.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscfetypes.h
/petsc/include/petscfv.h
/petsc/include/petscfvtypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmatelemental.h
/petsc/include/petscmath.h
/petsc/include/petscmathypre.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscpf.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvalgrind.h
/petsc/include/petscvec.h
/petsc/include/petscversion.h
/petsc/include/petscviennacl.h
/petsc/include/petscviewer.h
/petsc/include/petscviewerhdf5.h
/petsc/include/petscviewersaws.h
/petsc/include/petscviewertypes.h
/petsc/include/petscwebclient.h
/petsc/lib/petsc/conf/rules
/petsc/src/dm/f90-mod/petscdmplex.h90
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/product/product.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/swarm/data_bucket.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/pc/impls/telescope/telescope.h
/petsc/src/mat/examples/tests/ex176.c
/petsc/src/mat/examples/tests/ex230.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex230_t0_a_aij.out
/petsc/src/mat/examples/tests/output/ex230_t0_b_aij.out
/petsc/src/mat/examples/tests/output/ex230_t1_a_aij.out
/petsc/src/mat/examples/tests/output/ex230_t2_a_baij.out
/petsc/src/mat/examples/tests/output/ex230_t3_a_sbaij.out
/petsc/src/mat/examples/tests/output/ex230_t4_a_aij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t4_b_aij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t5_a_baij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t5_b_baij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t6_a_sbaij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t6_b_sbaij_bs3.out
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/sys/classes/random/randomimpl.h
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/logging/xmllogevent.c
/petsc/src/sys/logging/xmlviewer.h
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/mpiuni/mpitime.c
ftn-custom/zstart.c
pinit.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
/petsc/src/ts/impls/implicit/glle/glle.h
/petsc/src/ts/impls/implicit/sundials/sundials.h
/petsc/src/vec/vec/examples/tutorials/ex6f.F90
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
52556f0f14-Jul-2019 BarryFSmith <bsmith@mcs.anl.gov>

Merged in barry/cleanup-petscconf-h (pull request #1834)

Remove testing and inserting into petscconf.h items that are not actually used by PETSc


/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/headers.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MOAB.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/libjpeg.py
/petsc/config/BuildSystem/config/packages/libpng.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/zlib.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/types.py
/petsc/config/BuildSystem/config/utilities/debuggers.py
/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py
/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py
/petsc/config/BuildSystem/config/utilities/missing.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/scalarTypes.py
/petsc/config/PETSc/options/sharedLibraries.py
/petsc/config/configure.py
/petsc/config/examples/arch-olcf-summit-opt.py
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/src/dm/examples/tutorials/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/generators/triangle/trigenerate.c
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/ex54f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/snes/examples/tests/ex1.c
/petsc/src/snes/examples/tests/ex18f90.F90
/petsc/src/snes/examples/tests/ex1f.F90
/petsc/src/snes/examples/tests/output/ex1_4.out
/petsc/src/snes/examples/tests/output/ex1f_4.out
/petsc/src/snes/examples/tutorials/ex73f90t.F90
/petsc/src/snes/examples/tutorials/output/ex5_asm_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_5_alt.out
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/impls/tr/trimpl.h
/petsc/src/snes/interface/ftn-custom/zsnesf.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/fileio/mprint.c
ftn-custom/zstart.c
options.c
/petsc/src/sys/utils/memc.c
/petsc/src/sys/utils/str.c
/petsc/src/sys/yaml/yamlimpls.c
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/vec/vec/examples/tests/ex49.c
a8158fb514-Jul-2019 Karl Rupp <me@karlrupp.net>

Merge branch 'gropp/doc-fixes-1' [PR #1838]


/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/ADOLC.py
/petsc/config/BuildSystem/config/packages/ColPack.py
/petsc/config/BuildSystem/config/packages/hdf5.py
/petsc/config/BuildSystem/config/packages/openmp.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/szlib.py
/petsc/config/gmakegentest.py
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/include/petscvec.h
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbadbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/memory/mem.c
aoptions.c
options.c
prefix.c
/petsc/src/sys/utils/mathclose.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/sparse.cxx
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj.cxx
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vscat/interface/vscatfce.c
/petsc/src/vec/vscat/interface/vscreate.c
4211eb4805-Jul-2019 Barry Smith <bsmith@mcs.anl.gov>

Remove additional uneeded values from petscconf.h; reorganize handling of default debugger, make it lldb on darwin

Commit-type: style-fix
Thanks-to: Jed Brown <jed@jedbrown.org>

2475b7ca30-Jun-2019 Barry Smith <bsmith@mcs.anl.gov>

Remove testing and inserting into petscconf.h items that are not actually used by PETSc

1) PETSC_HAVE_LIBXXXX - which was rarely used
be careful with the package libpng and libjpeg since they hav

Remove testing and inserting into petscconf.h items that are not actually used by PETSc

1) PETSC_HAVE_LIBXXXX - which was rarely used
be careful with the package libpng and libjpeg since they have lib in the name of the package
2) various system include files that are never used or always exist: for example stdlib.h
3) various system functions that are never used or always exist
4) fixes for requires for MUMPS and SuperLU_DIST when dependent packages are installed or not installed (unrelated to the rest of this pull request)
5) packages that always exist such as PETSC_HAVE_BLASLAPACK, or are not used by PETSc such as PETSC_HAVE_NETCFD
6) remove a couple of uses of HAVE_LIB* in the code that were not needed by adjusting the configure code slightly
7) remove all the #if guards for each entry in petscconf.h since petscconf.h already has a guard and
the values are never defined else where the extra guards just make the file cluttered

For a build with about 10 external packages this reduced the size of petscconf.h from 1236 lines to 828/4 around 220 entries.

Commit-type: style-fix, cleanup

Reported-by: Jed Brown <jed@jedbrown.org

show more ...


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/headers.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MOAB.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/libjpeg.py
/petsc/config/BuildSystem/config/packages/libpng.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/zlib.py
/petsc/config/BuildSystem/config/types.py
/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py
/petsc/config/BuildSystem/config/utilities/missing.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscsys.h
/petsc/src/dm/examples/tutorials/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/snes/examples/tutorials/output/ex5_asm_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex5_msm_5_alt.out
/petsc/src/sys/fileio/mprint.c
options.c
/petsc/src/sys/utils/memc.c
/petsc/src/sys/utils/str.c
/petsc/src/sys/yaml/yamlimpls.c
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/vec/vec/examples/tests/ex49.c
5c4b051a10-Jul-2019 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/no-batch-script'


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/packages/hdf5.py
/petsc/config/BuildSystem/config/packages/mkl_sparse.py
/petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py
/petsc/config/BuildSystem/config/packages/mpi4py.py
/petsc/config/BuildSystem/config/packages/pARMS.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/programs.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/types.py
/petsc/config/BuildSystem/config/utilities/cacheDetails.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-cray-xc40-knl-opt.py
/petsc/config/examples/arch-linux-pgi.py
/petsc/config/examples/misc/arch-arm64-opt.py
/petsc/config/examples/misc/arch-armv7-opt.py
/petsc/config/examples/misc/arch-bgp-ibm-opt.py
/petsc/include/petsc/finclude/petscao.h
/petsc/include/petsc/finclude/petscbag.h
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/finclude/petscdmda.h
/petsc/include/petsc/finclude/petscdmlabel.h
/petsc/include/petsc/finclude/petscdmnetwork.h
/petsc/include/petsc/finclude/petscdmplex.h
/petsc/include/petsc/finclude/petscdraw.h
/petsc/include/petsc/finclude/petscerror.h
/petsc/include/petsc/finclude/petscis.h
/petsc/include/petsc/finclude/petscksp.h
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petsc/finclude/petscpc.h
/petsc/include/petsc/finclude/petscsnes.h
/petsc/include/petsc/finclude/petscsnesfas.h
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/finclude/petscts.h
/petsc/include/petsc/finclude/petscvec.h
/petsc/include/petsc/finclude/petscviewer.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/mpiuni/mpiunifdef.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/f90impl.h
/petsc/include/petsc/private/fortranimpl.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashmapi.h
/petsc/include/petsc/private/hashmapij.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/hashseti.h
/petsc/include/petsc/private/hashsetij.h
/petsc/include/petsc/private/hashtable.h
/petsc/include/petsc/private/petscconvestimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscfvimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscbt.h
/petsc/include/petsccharacteristic.h
/petsc/include/petscconvest.h
/petsc/include/petscctable.h
/petsc/include/petsccuda.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmcomposite.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmnetwork.h
/petsc/include/petscdmpatch.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmredundant.h
/petsc/include/petscdmshell.h
/petsc/include/petscdmsliced.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdstypes.h
/petsc/include/petscdt.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscfetypes.h
/petsc/include/petscfv.h
/petsc/include/petscfvtypes.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmatelemental.h
/petsc/include/petscmath.h
/petsc/include/petscmathypre.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscpf.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvalgrind.h
/petsc/include/petscvec.h
/petsc/include/petscversion.h
/petsc/include/petscviennacl.h
/petsc/include/petscviewer.h
/petsc/include/petscviewerhdf5.h
/petsc/include/petscviewersaws.h
/petsc/include/petscviewertypes.h
/petsc/include/petscwebclient.h
/petsc/lib/petsc/conf/rules
/petsc/src/dm/f90-mod/petscdmplex.h90
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/moab/examples/tests/ex1.cxx
/petsc/src/dm/impls/moab/examples/tests/ex3.cxx
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/product/product.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/swarm/data_bucket.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/telescope/telescope.h
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/examples/tests/ex176.c
/petsc/src/mat/examples/tests/ex230.c
/petsc/src/mat/examples/tests/ex26.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex230_t0_a_aij.out
/petsc/src/mat/examples/tests/output/ex230_t0_b_aij.out
/petsc/src/mat/examples/tests/output/ex230_t1_a_aij.out
/petsc/src/mat/examples/tests/output/ex230_t2_a_baij.out
/petsc/src/mat/examples/tests/output/ex230_t3_a_sbaij.out
/petsc/src/mat/examples/tests/output/ex230_t4_a_aij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t4_b_aij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t5_a_baij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t5_b_baij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t6_a_sbaij_bs3.out
/petsc/src/mat/examples/tests/output/ex230_t6_b_sbaij_bs3.out
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/fdaij.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/baijmkl/makefile
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/baij/seq/baijmkl/makefile
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/interface/matregis.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/output/ex19_mpibaijmkl.out
/petsc/src/snes/examples/tutorials/output/ex19_seqbaijmkl.out
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/random/randomimpl.h
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/logging/xmllogevent.c
/petsc/src/sys/logging/xmlviewer.h
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/mpiuni/mpitime.c
destroy.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/ts/impls/implicit/glle/glle.h
/petsc/src/ts/impls/implicit/sundials/sundials.h
/petsc/src/vec/vec/examples/tutorials/ex6f.F90
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
b9e7e5c121-Jun-2019 Barry Smith <bsmith@mcs.anl.gov>

No more batch submission script; this is all due to a very smart idea of Lisandro Dalcin

*) removed or fixed all remaining --know-xx options that required a batch submission script
*) removed all de

No more batch submission script; this is all due to a very smart idea of Lisandro Dalcin

*) removed or fixed all remaining --know-xx options that required a batch submission script
*) removed all details of --known-size-- that are no longer needed
*) cleaned up BAIJMKL source code, made it work with the rest of PETSc and removed is
dependence on a batch submission script, added test case for BAIJMKL
*) update the installation guide on batsch submissions and OpenMP
*) print MKL version, print OpenMP usage with mkl_sparse options

Commit-type: bug-fix, portability-fix, style-fix, feature, documentation, example
Thanks-to: Lisandro Dalcin <dalcinl@gmail.com>

$ ./configure --with-batch
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
=============================================================================== ***** WARNING: Cannot determine if MPI_INT64_T works on your system in batch-mode! Assuming it does work. Run with --known-mpi-int64_t=0 if you know it does not work (very unlikely). Run with --known-mpi-int64_t=1 to remove this warning message. warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot determine if MPI_C_DOUBLE_COMPLEX works on your system in batch-mode! Assuming it does work. Run with --known-mpi-c-double-complex=0 if you know it does not work (very unlikely). Run with --known-mpi-c-double-complex=1 to remove this warning message. warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot verify that MPI is a shared library - in batch-mode! If MPI is a static library but linked into multiple shared libraries that the application uses, sometimes compiles work - but one might get run-time errors. If you know that the MPI library is shared - run with --known-mpi-shared-libraries=1 option to remove this warning message ***** =============================================================================== =============================================================================== ***** WARNING: Cannot determine if BLAS/LAPACK uses 32 bit or 64 bit integers in batch-mode! Assuming 32 bit integers. Run with --known-64-bit-blas-indices if you know they are 64 bit. Run with --known-64-bit-blas-indices=0 to remove this warning message. warning message ***** ===============================================================================

show more ...


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/hdf5.py
/petsc/config/BuildSystem/config/packages/mkl_sparse.py
/petsc/config/BuildSystem/config/packages/mkl_sparse_optimize.py
/petsc/config/BuildSystem/config/packages/mpi4py.py
/petsc/config/BuildSystem/config/packages/pARMS.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/programs.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/types.py
/petsc/config/BuildSystem/config/utilities/cacheDetails.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-cray-xc40-knl-opt.py
/petsc/config/examples/arch-linux-pgi.py
/petsc/config/examples/misc/arch-arm64-opt.py
/petsc/config/examples/misc/arch-armv7-opt.py
/petsc/config/examples/misc/arch-bgp-ibm-opt.py
/petsc/include/petsclog.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/lib/petsc/conf/rules
/petsc/src/dm/f90-mod/petscdmplex.h90
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/plex/examples/tests/ex1f90.F90
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/examples/tests/ex176.c
/petsc/src/mat/examples/tests/ex26.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/aij/seq/fdaij.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/baijmkl/makefile
/petsc/src/mat/impls/baij/mpi/baijmkl/mpibaijmkl.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/baij/seq/baijmkl/makefile
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/interface/matregis.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/output/ex19_mpibaijmkl.out
/petsc/src/snes/examples/tutorials/output/ex19_seqbaijmkl.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
destroy.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
/petsc/src/vec/vec/examples/tutorials/ex6f.F90
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
57a5760d02-Jul-2019 William Gropp <wgropp@illinois.edu>

Merge from doc-fixes branch


/petsc/config/BuildSystem/config/setCompilers.py
/petsc/include/petscmat.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/lib/petsc/conf/rules
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/f90-mod/petscdmplex.h90
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/ex1f90.F90
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/installation.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbadbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/memory/mem.c
aoptions.c
options.c
prefix.c
/petsc/src/sys/utils/mathclose.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcuda/vecscattercuda.cu
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vscat/interface/vscatfce.c
/petsc/src/vec/vscat/interface/vscreate.c
a2b725a827-Jun-2019 William Gropp <wgropp@illinois.edu>

Fixes for doctext update


/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/include/petscmat.h
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmg.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmbvec.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/interface/dmksp.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbadbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiviennacl/mpiaijviennacl.cxx
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex9_mg.out
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/gll/petscgll.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
/petsc/src/sys/classes/viewer/impls/vu/petscvu.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/memory/mem.c
aoptions.c
options.c
prefix.c
/petsc/src/sys/utils/mathclose.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/is/is/impls/block/block.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/impls/shared/shvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
/petsc/src/vec/vscat/interface/vscatfce.c
/petsc/src/vec/vscat/interface/vscreate.c
5a85698621-Jun-2019 Barry Smith <bsmith@mcs.anl.gov>

Added PetscOptionsBoundInt(), error if value below bound, and PetscOptionsRangeInt(), error if out of range

Replaced a small amount of the usage in the source code. Easy, slightly boring process to

Added PetscOptionsBoundInt(), error if value below bound, and PetscOptionsRangeInt(), error if out of range

Replaced a small amount of the usage in the source code. Easy, slightly boring process to replace the rest

Commit-type: error checking

show more ...


/petsc/include/petscoptions.h
/petsc/include/petscversion.h
/petsc/src/benchmarks/streams/CUDAVersion.cu
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/examples/tests/ex3.c
/petsc/src/dm/dt/examples/tests/ex5.c
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/space/impls/tensor/spacetensor.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/examples/tutorials/ex9.c
/petsc/src/dm/field/examples/tutorials/ex1.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/moab/examples/tests/ex1.cxx
/petsc/src/dm/impls/moab/examples/tests/ex2.cxx
/petsc/src/dm/impls/moab/examples/tests/ex3.cxx
/petsc/src/dm/impls/patch/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex12.c
/petsc/src/dm/impls/plex/examples/tests/ex13.c
/petsc/src/dm/impls/plex/examples/tests/ex14.c
/petsc/src/dm/impls/plex/examples/tests/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex16.c
/petsc/src/dm/impls/plex/examples/tests/ex17.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex20.c
/petsc/src/dm/impls/plex/examples/tests/ex21.c
/petsc/src/dm/impls/plex/examples/tests/ex22.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex24.c
/petsc/src/dm/impls/plex/examples/tests/ex25.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex27.c
/petsc/src/dm/impls/plex/examples/tests/ex29.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex31.c
/petsc/src/dm/impls/plex/examples/tests/ex32.c
/petsc/src/dm/impls/plex/examples/tests/ex34.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/ex6.c
/petsc/src/dm/impls/plex/examples/tests/ex7.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tutorials/ex2.c
/petsc/src/dm/impls/plex/examples/tutorials/ex6.c
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/examples/tutorials/ex8.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/docs/website/download/index.html
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
aoptions.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/ts/examples/tutorials/power_grid/output/ex9opt_2.out
b6a92dca26-Jun-2019 BarryFSmith <bsmith@mcs.anl.gov>

Merged in barry/cuda-multigrid-test (pull request #1763)

Various improvements for GPUs (mostly for performance and CUDA)


/petsc/.travis.yml
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/examples/arch-c-exodus-dbg-builder.csh
/petsc/config/examples/arch-cuda-double.csh
/petsc/config/examples/arch-cuda-single.csh
/petsc/config/examples/arch-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-linux-analyzer.py
/petsc/config/examples/arch-linux-clang-avx.py
/petsc/config/examples/arch-linux-cmplx-gcov.py
/petsc/config/examples/arch-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-linux-gcc-cxx-avx2.py
/petsc/config/examples/arch-linux-knl.py
/petsc/config/examples/arch-linux-opt-misc.py
/petsc/config/examples/arch-linux-pgi.py
/petsc/config/examples/arch-linux-pkgs-64idx.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-linux-pkgs-dbg-ftn-interfaces.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-linux-pkgs-opt.py
/petsc/config/examples/arch-linux-pkgs-valgrind.py
/petsc/config/examples/arch-olcf-summit-opt.csh
/petsc/config/examples/arch-osx-10.6-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.py
/petsc/config/examples/arch-osx-10.6.py
/petsc/config/examples/arch-pardiso.py
/petsc/config/examples/arch-viennacl.py
/petsc/gmakefile.test
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petsc/private/viewerhdf5impl.h
/petsc/include/petscdmda.h
/petsc/include/petscdmplex.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscvec.h
/petsc/include/petscviewerhdf5.h
/petsc/lib/petsc/bin/petscmpiexec
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/variables
/petsc/src/dm/f90-mod/makefile
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadestroy.c
/petsc/src/dm/impls/da/dadist.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/dapreallocate.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/output/ex18_8.out
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexhdf5.c
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/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/f90-mod/makefile
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_6_hdf5.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_6_hdf5_dense.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_6_hdf5_rect.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_6_hdf5_rect_dense.out
/petsc/src/ksp/ksp/impls/cheby/cheby.c
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/petsc/src/mat/examples/tutorials/ex10.c
/petsc/src/mat/examples/tutorials/output/ex10_mpiaij_rect_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_mpidense_hdf5.out
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/petsc/src/mat/examples/tutorials/output/ex10_seqaij_rect_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_seqdense_hdf5.out
/petsc/src/mat/examples/tutorials/output/ex10_seqdense_rect_hdf5.out
/petsc/src/mat/f90-mod/makefile
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/dense/seq/dense.h
/petsc/src/mat/impls/dense/seq/densehdf5.c
/petsc/src/mat/impls/dense/seq/makefile
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/f90-mod/makefile
/petsc/src/sys/examples/tests/ex32.c
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/petsc/src/sys/examples/tutorials/ex16f.F90
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/petsc/src/sys/f90-mod/makefile
/petsc/src/sys/mpiuni/f90-mod/makefile
ftn-custom/zinheritf.c
init.c
pinit.c
/petsc/src/tao/examples/tutorials/ex4.c
/petsc/src/tao/f90-mod/makefile
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/petsc/src/ts/f90-mod/makefile
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/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
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/petsc/src/vec/vec/impls/seq/seqviennacl/vecviennacl.cxx
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/vecio.c

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