History log of /petsc/src/tao/leastsquares/ (Results 226 – 250 of 423)
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94e8dcca06-Jul-2018 Todd Munson <tmunson@mcs.anl.gov>

Correct array generation in parallel case.

Correct usage of the tensor matrix.


impls/pounders/pounders.c
fedd2e4c05-Jul-2018 Todd Munson <tmunson@mcs.anl.gov>

Squashed a big bug in the serial code with no weights.


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/petsc/src/snes/impls/multiblock/multiblock.c
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/petsc/src/snes/impls/ngmres/anderson.c
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/petsc/src/snes/impls/richardson/snesrichardson.c
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/petsc/src/snes/interface/noise/snesdnest.c
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/petsc/src/snes/interface/noise/snesnoise.c
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/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
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/petsc/src/snes/linesearch/interface/linesearch.c
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/petsc/src/sys/classes/random/examples/tutorials/ex2.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
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/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
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/petsc/src/sys/logging/ftn-custom/zplogf.c
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/petsc/src/sys/memory/mtr.c
/petsc/src/sys/objects/ftn-custom/zstart.c
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/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/blmvm/blmvm.h
/petsc/src/tao/bound/impls/bncg/bncg.c
/petsc/src/tao/bound/impls/bnk/bnk.c
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/petsc/src/tao/bound/impls/bqnk/bqnk.c
/petsc/src/tao/bound/impls/bqnk/bqnk.h
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/petsc/src/tao/examples/tutorials/ex3.c
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/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/interface/taosolverregi.c
impls/pounders/pounders.c
/petsc/src/tao/linesearch/interface/dlregis_taolinesearch.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/matrix/adamat.c
/petsc/src/tao/matrix/makefile
/petsc/src/tao/pde_constrained/examples/tutorials/elliptic.c
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/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
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/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_cn.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.h
/petsc/src/tao/unconstrained/impls/nls/nls.c
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/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntl/ntlimpl.h
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/ntr/ntrimpl.h
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/slregis.c
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/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/ex6_1.out
/petsc/src/ts/f90-mod/petsctsmod.F
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/makefile
/petsc/src/ts/interface/sensitivity/makefile
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/is/ao/interface/dlregisdm.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isblock.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/examples/tests/output/ex32f_1.out
/petsc/src/vec/vec/examples/tests/output/ex41_1.out
/petsc/src/vec/vec/examples/tutorials/ex21.c
/petsc/src/vec/vec/examples/tutorials/ex21f90.F90
/petsc/src/vec/vec/examples/tutorials/ex43.c
/petsc/src/vec/vec/examples/tutorials/ex43f.F90
/petsc/src/vec/vec/examples/tutorials/makefile
/petsc/src/vec/vec/examples/tutorials/output/ex43f_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex4f_1.out
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/comb.c
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/impls/vscat.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscreate.c
87aa24fb30-May-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/tmunson/tao-pounders-matlab-interface'


/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/Matlab.py
/petsc/config/BuildSystem/config/packages/fftw.py
/petsc/config/PETSc/Configure.py
/petsc/config/configure.py
/petsc/config/gmakegentest.py
/petsc/config/install.py
/petsc/include/petsc/mpiuni/mpif.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/builddist
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/makefile
/petsc/share/petsc/matlab/makefile
/petsc/src/dm/dt/examples/tests/ex3.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/impls/moab/makefile
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/swarm/data_bucket.c
/petsc/src/dm/impls/swarm/data_ex.h
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/manualpages-sec/header_DMMOAB
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/index.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/impls/cg/cgtype.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/sclose.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/sopen.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/sread.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/swrite.c
/petsc/src/sys/logging/examples/tutorials/ex1f.F90
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/interface/taosolver.c
examples/matlab/ProblemFinalize.m
examples/matlab/ProblemInitialize.m
examples/matlab/README
examples/matlab/TestingFinalize.m
examples/matlab/TestingInitialize.m
examples/matlab/TestingPlot.m
examples/matlab/makefile
examples/matlab/more_wild_probs/dfo.dat
examples/matlab/more_wild_probs/dfovec.m
examples/matlab/more_wild_probs/dfovec_wrap.m
examples/matlab/more_wild_probs/dfoxs.m
examples/matlab/more_wild_probs/perf_profile.m
examples/matlab/taopounders.c
impls/pounders/pounders.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/examples/tutorials/power_grid/ex3sa.c
/petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_3.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/interface/tssen.c
/petsc/src/vec/vec/interface/f90-custom/zvectorf90.c
/petsc/src/vec/vec/interface/rvector.c
481d91ae25-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Remove matlab pounders related cruft that is not required. Document the
matlab code better and include an appropriate message in the help text.


examples/matlab/ProblemFinalize.m
examples/matlab/ProblemInitialize.m
examples/matlab/TestingFinalize.m
examples/matlab/TestingInitialize.m
examples/matlab/TestingPlot.m
examples/matlab/more_wild_probs/dfovec_wrap.m
examples/matlab/taopounders.c
f18eb5cd25-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Fixed typo.


examples/matlab/makefile
73c0cbc125-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Remove the inclusion of matlab in testing.


examples/makefile
b38a9dd025-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Finalizing comments and the work for the test problems.


examples/matlab/README
examples/matlab/TestingInitialize.m
7b4d9c8424-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Finished the testing and generation of plots. Some simple bug
fixes addressed.


examples/matlab/ProblemFinalize.m
examples/matlab/TestingFinalize.m
examples/matlab/TestingInitialize.m
examples/matlab/TestingPlot.m
impls/pounders/pounders.c
654cbf8524-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Added list of known problems with the code.


examples/matlab/README
1d4272e824-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Added a comment on ignoring the return from Tao.


examples/matlab/taopounders.c
74919a8c24-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Finish with initial implementation of matlab interface to test TAO pounders.


examples/makefile
examples/matlab/ProblemInitialize.m
examples/matlab/makefile
examples/matlab/taopounders.c
16cd255d24-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Working through the matlab interface for pounders testing.

Fixed pounders bug in view.


examples/matlab/ProblemFinalize.m
examples/matlab/ProblemInitialize.m
examples/matlab/TestingFinalize.m
examples/matlab/TestingInitialize.m
examples/matlab/regression_test.m
examples/matlab/taopounders.c
impls/pounders/pounders.c
e729222f20-May-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/jed/mpiuni-include/maint'


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examples/tutorials/chwirut2.c
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/petsc/src/vec/vec/examples/tutorials/ex1f.F90
/petsc/src/vec/vec/examples/tutorials/makefile
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/utils/tagger/examples/tutorials/makefile
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0e062f7d10-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Working on the code some more.


examples/matlab/taopounders.c
22c6c8e310-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Making matlab mex files compile (need main to be defined with matlab 2018a,
clang, and configured --with-mpi=0)

Create correct makefile for pounders testing.


/petsc/src/sys/classes/viewer/impls/socket/matlab/sclose.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/sopen.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/sread.c
/petsc/src/sys/classes/viewer/impls/socket/matlab/swrite.c
examples/matlab/makefile
examples/matlab/regression_test.m
examples/matlab/taopounders.c
529ccf6409-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Updating tests.


examples/matlab/regression_test.m
examples/matlab/taopounders.c
36f3894709-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Merge branch 'tmunson/tao-pounders-matlab-interface' of https://bitbucket.org/petsc/petsc into tmunson/tao-pounders-matlab-interface


examples/matlab/more_wild_probs/calfun.m
examples/matlab/more_wild_probs/data_profile.m
examples/matlab/more_wild_probs/dfo.dat
examples/matlab/more_wild_probs/dfomn.m
examples/matlab/more_wild_probs/dfovec.m
examples/matlab/more_wild_probs/dfovec_wrap.m
examples/matlab/more_wild_probs/dfoxs.m
examples/matlab/more_wild_probs/perf_profile.m
examples/matlab/regression_test.m
b428446e09-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Added test problems and matlab code.


examples/matlab/more_wild_probs/calfun.m
examples/matlab/more_wild_probs/data_profile.m
examples/matlab/more_wild_probs/dfo.dat
examples/matlab/more_wild_probs/dfomn.m
examples/matlab/more_wild_probs/dfovec.m
examples/matlab/more_wild_probs/dfovec_wrap.m
examples/matlab/more_wild_probs/dfoxs.m
examples/matlab/more_wild_probs/perf_profile.m
examples/matlab/regression_test.m
ada47c8509-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Updating version and testing on linux.


examples/matlab/build.sh
examples/matlab/taopounders.c
66ce517808-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Updated version for debugging.


examples/matlab/taopounders.c
f553c65507-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Almost working version...


examples/matlab/build.sh
examples/matlab/taopounders.c
impls/pounders/pounders.c
5f4d796507-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Version of MATLAB interface that compiles.


examples/matlab/taopounders.c
89f725d504-May-2018 Todd Munson <tmunson@mcs.anl.gov>

Start of the matlab mex interface to tao pounders for texting purposes.


/petsc/.gitignore
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/examples/arch-linux-gcc-avx2.py
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examples/matlab/taopounders.c
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/petsc/src/tao/quadratic/impls/bqpip/bqpipimpl.h
/petsc/src/tao/quadratic/impls/bqpip/makefile
/petsc/src/tao/quadratic/impls/gpcg/gpcg.c
/petsc/src/tao/quadratic/impls/gpcg/gpcg.h
/petsc/src/tao/quadratic/impls/gpcg/makefile
/petsc/src/tao/quadratic/impls/makefile
/petsc/src/tao/quadratic/makefile
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf2.c
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_7.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_7_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_8.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_8_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_5.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_8.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_8_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_9.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_9_alt.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c
/petsc/src/ts/examples/tests/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/ex24.c
/petsc/src/ts/examples/tutorials/hybrid/makefile
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/examples/tutorials/network/wash/pipe.h
/petsc/src/ts/examples/tutorials/network/wash/pipes1.c
/petsc/src/ts/examples/tutorials/network/wash/wash.h
/petsc/src/ts/examples/tutorials/output/ex24_1.out
/petsc/src/ts/examples/tutorials/output/ex24_2.out
/petsc/src/ts/examples/tutorials/power_grid/makefile
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/makefile
/petsc/src/ts/utils/dmplexts.c
/petsc/src/vec/is/ao/examples/tests/ex3d/makefile
/petsc/src/vec/is/ao/examples/tests/makefile
/petsc/src/vec/is/examples/tests/makefile
/petsc/src/vec/is/is/examples/tests/makefile
/petsc/src/vec/is/is/examples/tutorials/makefile
/petsc/src/vec/is/sf/examples/tests/makefile
/petsc/src/vec/is/sf/examples/tutorials/makefile
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/ex28.c
/petsc/src/vec/vec/examples/tests/makefile
/petsc/src/vec/vec/examples/tests/output/ex28_1.out
/petsc/src/vec/vec/examples/tutorials/ex1f.F90
/petsc/src/vec/vec/examples/tutorials/makefile
/petsc/src/vec/vec/utils/tagger/examples/tutorials/makefile
/petsc/src/vec/vscat/examples/makefile
466ff99527-Apr-2018 Alp Dener <alp.dener@gmail.com>

Relative tolerancing in tests changed to absolute


/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/bound/examples/tutorials/output/jbearing2_5.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_3.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_4.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_5.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_6.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_7.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_8.out
/petsc/src/tao/bound/examples/tutorials/plate2.c
/petsc/src/tao/bound/examples/tutorials/plate2f.F90
/petsc/src/tao/constrained/examples/tutorials/output/toy_1.out
/petsc/src/tao/constrained/examples/tutorials/output/toyf_1.out
/petsc/src/tao/constrained/examples/tutorials/toy.c
/petsc/src/tao/constrained/examples/tutorials/toyf.F90
examples/tests/chwirut2.c
examples/tutorials/chwirut1.c
examples/tutorials/chwirut1f.F90
examples/tutorials/chwirut2.c
examples/tutorials/chwirut2f.F90
/petsc/src/tao/pde_constrained/examples/tutorials/elliptic.c
/petsc/src/tao/pde_constrained/examples/tutorials/hyperbolic.c
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion1.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf1.c
/petsc/src/tao/unconstrained/examples/tutorials/minsurf2.c
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion1_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_4.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf1_5.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_5.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_10.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1_3.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock1f_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F90
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c
f98a827127-Apr-2018 Alp Dener <alp.dener@gmail.com>

Tests now run to 1e-5 gatol at the lowest to ensure that output files are consistent across single and double precision


/petsc/config/BuildSystem/RDict.py
/petsc/config/BuildSystem/args.py
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Chaco.py
/petsc/config/BuildSystem/config/packages/Chombo.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/Matlab.py
/petsc/config/BuildSystem/config/packages/MatlabEngine.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/PARTY.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/PaStiX.py
/petsc/config/BuildSystem/config/packages/Random123.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/config/BuildSystem/config/packages/SuperLU_MT.py
/petsc/config/BuildSystem/config/packages/Triangle.py
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/petsc/config/BuildSystem/config/packages/Zoltan.py
/petsc/config/BuildSystem/config/packages/alquimia.py
/petsc/config/BuildSystem/config/packages/amanzi.py
/petsc/config/BuildSystem/config/packages/ascem-io.py
/petsc/config/BuildSystem/config/packages/boost.py
/petsc/config/BuildSystem/config/packages/combblas.py
/petsc/config/BuildSystem/config/packages/concurrencykit.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/cusp.py
/petsc/config/BuildSystem/config/packages/exodusii.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/lgrind.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/packages/p4est.py
/petsc/config/BuildSystem/config/packages/pARMS.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pflotran.py
/petsc/config/BuildSystem/config/packages/radau5.py
/petsc/config/BuildSystem/config/packages/scalapack.py
/petsc/config/BuildSystem/config/packages/sowing.py
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/petsc/config/BuildSystem/config/packages/tchem.py
/petsc/config/BuildSystem/config/packages/tetgen.py
/petsc/config/BuildSystem/config/packages/viennacl.py
/petsc/config/BuildSystem/config/packages/xSDKTrilinos.py
/petsc/config/BuildSystem/config/packages/zlib.py
/petsc/config/BuildSystem/config/programs.py
/petsc/config/BuildSystem/config/python.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/setsBackport.py
/petsc/config/BuildSystem/config/setsOrdered.py
/petsc/config/BuildSystem/config/utilities/FPTrap.py
/petsc/config/BuildSystem/config/utilities/cacheDetails.py
/petsc/config/BuildSystem/configure.py
/petsc/config/BuildSystem/docs/manual.xml
/petsc/config/BuildSystem/graph.py
/petsc/config/BuildSystem/help.py
/petsc/config/BuildSystem/logger.py
/petsc/config/BuildSystem/make.py
/petsc/config/BuildSystem/maker.py
/petsc/config/BuildSystem/nargs.py
/petsc/config/BuildSystem/pythonpath.py
/petsc/config/BuildSystem/retrieval.py
/petsc/config/BuildSystem/script.py
/petsc/config/BuildSystem/sourceDatabase.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/dataFilesPath.py
/petsc/config/PETSc/options/installDir.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/PETSc/options/petscdir.py
/petsc/config/PETSc/petsc.py
/petsc/config/builder2.py
/petsc/config/cmakeboot.py
/petsc/config/cmakegen.py
/petsc/config/configure.py
/petsc/config/examples/arch-arm64-opt.py
/petsc/config/examples/arch-armv7-opt.py
/petsc/config/examples/arch-cray-xc40-knl-opt.py
/petsc/config/examples/arch-linux-knl.py
/petsc/config/gmakegentest.py
/petsc/config/install.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/config/testparse.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmfieldimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscds.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscgll.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmath.h
/petsc/include/petscoptions.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscts.h
/petsc/include/petscversion.h
/petsc/include/petscviewer.h
/petsc/lib/petsc/bin/PetscBinaryIOTrajectory.py
/petsc/lib/petsc/bin/maint/PetscStaticFunctionCandidates.py
/petsc/lib/petsc/bin/maint/bk2darcs.py
/petsc/lib/petsc/bin/maint/bk2hg.py
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/petsc/lib/petsc/bin/maint/buildtest.py
/petsc/lib/petsc/bin/maint/checkBuilds.py
/petsc/lib/petsc/bin/maint/checkloc.py
/petsc/lib/petsc/bin/maint/exampleslog.py
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/lib/petsc/bin/maint/generatefortranstubs.py
/petsc/lib/petsc/bin/maint/generators/prettyprint.py
/petsc/lib/petsc/bin/maint/getpdflabels.py
/petsc/lib/petsc/bin/maint/helpindex.py
/petsc/lib/petsc/bin/maint/lex.py
/petsc/lib/petsc/bin/maint/mapnameslatex.py
/petsc/lib/petsc/bin/maint/normalizeOutput.py
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/lib/petsc/bin/maint/testharness_util.py
/petsc/lib/petsc/bin/maint/update-docs.py
/petsc/lib/petsc/bin/maint/wwwindex.py
/petsc/lib/petsc/bin/petsclogformat.py
/petsc/lib/petsc/bin/petscnagupgrade.py
/petsc/lib/petsc/bin/saws/SAWs.py
/petsc/lib/petsc/bin/taucc.py
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/test
/petsc/lib/petsc/conf/variables
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/blockcylinder-50.h5
/petsc/share/petsc/datafiles/meshes/blockcylinder-50.xmf
/petsc/src/benchmarks/benchmarkAssembly.py
/petsc/src/benchmarks/benchmarkBatch.py
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/benchmarks/daemon.py
/petsc/src/benchmarks/streams/process.py
/petsc/src/contrib/style/checks/PetscFunctionBegin.py
/petsc/src/contrib/style/checks/PetscFunctionBegin2.py
/petsc/src/contrib/style/checks/PetscFunctionReturn.py
/petsc/src/dm/dt/examples/tests/ex5.c
/petsc/src/dm/dt/examples/tests/makefile
/petsc/src/dm/dt/examples/tests/output/ex5_0.out
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/ftn-custom/zdtfef.c
/petsc/src/dm/field/examples/makefile
/petsc/src/dm/field/examples/tutorials/ex1.c
/petsc/src/dm/field/examples/tutorials/makefile
/petsc/src/dm/field/examples/tutorials/output/ex1_da.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_da_3.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_0.out
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/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_0.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_1.out
/petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_2.out
/petsc/src/dm/field/examples/tutorials/output/ex1_shell.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/field/impls/da/makefile
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/field/impls/ds/makefile
/petsc/src/dm/field/impls/makefile
/petsc/src/dm/field/impls/shell/dmfieldshell.c
/petsc/src/dm/field/impls/shell/makefile
/petsc/src/dm/field/interface/dlregisdmfield.c
/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/field/interface/dmfieldregi.c
/petsc/src/dm/field/interface/makefile
/petsc/src/dm/field/makefile
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacorn.c
/petsc/src/dm/impls/da/dadestroy.c
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/daview.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/forest/examples/tests/ex2.c
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/moab/dmmbfield.cxx
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex22.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex25.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex10_group_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex10_group_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_2.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex12_4.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex18_0.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex18_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_3.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex18_quad_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_quad_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1d_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_1d_refine_overlap_0.out
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