History log of /petsc/src/tao/ (Results 1376 – 1400 of 1550)
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0f51fdf813-Dec-2014 Toby Isaac <tisaac@ices.utexas.edu>

Remove XXXRegisterAllCalled from public interface.

All XXXRegisterAll() methods are now idempotent, so a boolean indicating
whether they can be called or not is no longer necessary.


/petsc/conf/rules
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/c2html.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/f2cblaslapack.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/viennacl.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/sourceControl.py
/petsc/config/BuildSystem/config/utilities/missing.py
/petsc/config/PETSc/options/petscclone.py
/petsc/config/builder.py
/petsc/gmakefile
/petsc/include/petsc-private/characteristicimpl.h
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/drawimpl.h
/petsc/include/petsc-private/isimpl.h
/petsc/include/petsc-private/kspimpl.h
/petsc/include/petsc-private/linesearchimpl.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petsc-private/pcimpl.h
/petsc/include/petsc-private/petscdsimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petsc-private/petscfvimpl.h
/petsc/include/petsc-private/snesimpl.h
/petsc/include/petsc-private/tsimpl.h
/petsc/include/petsc-private/vecimpl.h
/petsc/include/petsc-private/viewerimpl.h
/petsc/include/petscao.h
/petsc/include/petscbt.h
/petsc/include/petsccharacteristic.h
/petsc/include/petsccusp.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscds.h
/petsc/include/petscfe.h
/petsc/include/petscfv.h
/petsc/include/petscis.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscpf.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/square.msh
/petsc/share/petsc/datafiles/meshes/square_bin.msh
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex13.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tests/makefile
/petsc/src/dm/impls/plex/examples/tests/output/ex13_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex13_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex13_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex13_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_18.out
/petsc/src/dm/impls/plex/makefile
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexorient.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/impls/cg/groppcg/groppcg.c
/petsc/src/ksp/ksp/impls/cg/pipecg/pipecg.c
/petsc/src/ksp/ksp/impls/cr/pipecr/pipecr.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itregis.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/mat/coarsen/scoarsen.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/color/interface/matcoloringregi.c
/petsc/src/mat/examples/tests/ex180.c
/petsc/src/mat/examples/tests/ex99.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mfregis.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/interface/matregis.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/order/sregis.c
/petsc/src/mat/partition/spartition.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/gs/gssecant.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/linesearch/interface/linesearchregi.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/draw/interface/drawregall.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/random/interface/randreg.c
/petsc/src/sys/classes/random/randomimpl.h
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/classes/viewer/interface/viewregall.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/threadcomm/interface/threadcomm.c
/petsc/src/sys/threadcomm/interface/threadcommregi.c
interface/taosolver.c
interface/taosolverregi.c
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/characteristic/interface/mocregis.c
/petsc/src/ts/impls/implicit/gl/gladapt.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsregall.c
/petsc/src/vec/is/ao/aoimpl.h
/petsc/src/vec/is/ao/interface/aoreg.c
/petsc/src/vec/is/ao/interface/aoregall.c
/petsc/src/vec/is/is/interface/isreg.c
/petsc/src/vec/is/is/interface/isregall.c
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/sfregi.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/pf/interface/pfall.c
/petsc/src/vec/pf/pfimpl.h
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/interface/vecreg.c
/petsc/src/vec/vec/interface/vecregall.c
/petsc/src/vec/vec/interface/vector.c
854ce69b15-Nov-2014 Barry Smith <bsmith@mcs.anl.gov>

convert some PetscMalloc() to PetscMalloc1()
remove unneeded () in first argument to PetscMalloc/Calloc1()
fixes for MATLAB examples


/petsc/config/PETSc/Regression.py
/petsc/include/petscbt.h
/petsc/include/petscsys.h
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/ex8.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tutorials/ex1.c
/petsc/src/dm/examples/tutorials/ex6.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/dadd.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/dainterp.c
/petsc/src/dm/impls/da/daltol.c
/petsc/src/dm/impls/da/dapreallocate.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/usfft/matusfft.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexlabel.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/docs/website/petsc-20.html
/petsc/src/ksp/ksp/examples/tests/ex10.c
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex30.c
/petsc/src/ksp/ksp/examples/tests/ex32.c
/petsc/src/ksp/ksp/examples/tests/ex4.c
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex49.c
/petsc/src/ksp/ksp/examples/tutorials/ex51.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex59.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
/petsc/src/ksp/ksp/impls/gmres/pgmres/pgmres.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/parms/parms.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/tfs/tfs.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/color/impls/natural/natural.c
/petsc/src/mat/color/utils/bipartite.c
/petsc/src/mat/color/utils/valid.c
/petsc/src/mat/examples/tests/ex116.c
/petsc/src/mat/examples/tests/ex118.c
/petsc/src/mat/examples/tests/ex120.c
/petsc/src/mat/examples/tests/ex129.c
/petsc/src/mat/examples/tests/ex144.c
/petsc/src/mat/examples/tests/ex146.c
/petsc/src/mat/examples/tests/ex152.c
/petsc/src/mat/examples/tests/ex32.c
/petsc/src/mat/examples/tests/ex99.c
/petsc/src/mat/examples/tutorials/ex12.c
/petsc/src/mat/examples/tutorials/ex5.c
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/crl/mcrl.c
/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/bas/basfactor.c
/petsc/src/mat/impls/aij/seq/bas/spbas.c
/petsc/src/mat/impls/aij/seq/csrperm/csrperm.c
/petsc/src/mat/impls/aij/seq/ij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/matptap.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/aij/seq/symtranspose.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mmbaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/baij/seq/baijfact2.c
/petsc/src/mat/impls/baij/seq/baijfact3.c
/petsc/src/mat/impls/cufft/cufft.cu
/petsc/src/mat/impls/dense/mpi/mmdense.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/sbaij/seq/sbaijfact.c
/petsc/src/mat/impls/sbaij/seq/sbaijfact2.c
/petsc/src/mat/impls/shell/shellcnv.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/partition/impls/chaco/chaco.c
/petsc/src/mat/partition/impls/party/party.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/pheap.c
/petsc/src/snes/examples/tutorials/ex30.c
/petsc/src/snes/examples/tutorials/ex5s.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/dll/reg.c
/petsc/src/sys/error/fp.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/fileio/ftest.c
/petsc/src/sys/ftn-custom/zutils.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/fcallback.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/prefix.c
/petsc/src/sys/objects/subcomm.c
/petsc/src/sys/objects/tagm.c
/petsc/src/sys/threadcomm/examples/tutorials/ex2.c
/petsc/src/sys/threadcomm/interface/threadcomm.c
/petsc/src/sys/utils/ctable.c
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpiu.c
/petsc/src/sys/utils/str.c
/petsc/src/sys/yaml/yamlimpls.c
constrained/impls/ipm/ipm.c
leastsquares/impls/pounders/pounders.c
pde_constrained/examples/tutorials/elliptic.c
unconstrained/impls/neldermead/neldermead.c
/petsc/src/ts/characteristic/impls/da/slda.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/examples/tests/ex10.c
/petsc/src/ts/examples/tests/ex22.c
/petsc/src/ts/examples/tests/ex3.c
/petsc/src/vec/is/ao/impls/basic/aobasic.c
/petsc/src/vec/is/ao/impls/mapping/aomapping.c
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/is/utils/f90-custom/ziscoloringf90.c
/petsc/src/vec/is/is/utils/ftn-custom/ziscoloringf.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/is/utils/isdiff.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/examples/tests/ex24.c
/petsc/src/vec/vec/examples/tutorials/ex9.c
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/interface/f90-custom/zvectorf90.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj
/petsc/systems/Apple/iOS/bin/arch-ios-simulator.py
/petsc/systems/Apple/iOS/bin/iosbuilder.py
/petsc/systems/Apple/iOS/bin/makeall
/petsc/tutorials/HandsOnExercise.html
b16c341913-Nov-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'maint'


/petsc/bin/maint/generateetags.py
/petsc/bin/petscnagupgrade.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/cusp.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/arch.py
/petsc/include/finclude/petscmat.h
/petsc/include/finclude/petscpc.h
/petsc/include/finclude/petscpcdef.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petscblaslapack.h
/petsc/include/petscmat.h
/petsc/src/dm/impls/da/dagetarray.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex37.c
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex46_aijcusp.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex46_aijcusparse.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5_redundant.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex5_redundant_0.out
/petsc/src/ksp/ksp/impls/cg/cgeig.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/mat/examples/tests/ex169.c
/petsc/src/mat/examples/tests/ex48.c
/petsc/src/mat/examples/tests/ex86.c
/petsc/src/mat/examples/tests/ex87.c
/petsc/src/mat/examples/tests/ex9.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex86_1.out
/petsc/src/mat/examples/tests/output/ex86_2.out
/petsc/src/mat/examples/tests/output/ex86_3.out
/petsc/src/mat/examples/tests/output/ex9_3_baij.out
/petsc/src/mat/examples/tests/output/ex9_3_sbaij.out
/petsc/src/mat/examples/tests/output/ex9_4_baij.out
/petsc/src/mat/examples/tests/output/ex9_4_sbaij.out
/petsc/src/mat/impls/aij/mpi/clique/clique.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/essl/essl.c
/petsc/src/mat/impls/aij/seq/lusol/lusol.c
/petsc/src/mat/impls/aij/seq/matlab/aijmatlab.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/mat/impls/aij/seq/seqcusp/cuspmatimpl.h
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/aij/seq/umfpack/umfpack.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.h
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/dense/mpi/mpidense.h
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.h
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/sys/error/signal.c
/petsc/src/sys/objects/pname.c
interface/fdiff.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/vec/vec/utils/matlab/gcreatev.c
5674449113-Nov-2014 Barry Smith <bsmith@mcs.anl.gov>

removed outdated documentation on no longer needed flag about matrix sparsity

Reported-by: Robert Nourgaliev <nourgaliev1@llnl.gov>

fced3c3f30-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/fix-setters'


/petsc/config/BuildSystem/config/packages/p4est.py
/petsc/config/builder.py
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/pcimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
/petsc/include/petscksp.h
/petsc/include/petscpc.h
/petsc/include/petsctao.h
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/output/ex16_1.out
/petsc/src/dm/examples/tests/output/ex16_2.out
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/makefile
/petsc/src/dm/impls/plex/examples/tests/output/ex1_13.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_14.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_6.out
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/interface/dmi.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex25.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex7.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex7_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex7_2.out
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/factor.h
/petsc/src/ksp/pc/impls/factor/icc/icc.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/gamg.h
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex139_1.out
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex66.c
/petsc/src/snes/examples/tutorials/network/pflow/PFReadData.c
/petsc/src/snes/examples/tutorials/network/pflow/pf.c
/petsc/src/snes/examples/tutorials/output/ex15_lag_jac.out
/petsc/src/snes/examples/tutorials/output/ex15_lag_pc.out
unconstrained/impls/nls/nls.c
unconstrained/impls/ntl/ntl.c
unconstrained/impls/ntr/ntr.c
/petsc/systems/Apple/OSX/bin/makeframework
8a1bb6eb30-Oct-2014 Matthew G. Knepley <knepley@gmail.com>

SNES ex12, ex62, TAO ex1: Cast boundary values function

4446f3b424-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'maint'

Conflicts:
config/BuildSystem/config/packages/ml.py
src/ksp/pc/impls/mg/mg.c


/petsc/config/BuildSystem/config/packages/ml.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/utilities/__init__.py
/petsc/config/BuildSystem/config/utilities/closure.py
/petsc/include/finclude/ftn-custom/petscdmplex.h90
/petsc/include/finclude/ftn-custom/petscdt.h90
/petsc/include/finclude/ftn-custom/petscis.h90
/petsc/include/finclude/ftn-custom/petscmat.h90
/petsc/include/finclude/ftn-custom/petscvec.h90
/petsc/include/finclude/petscksp.h
/petsc/include/petsc-private/matimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscerror.h
/petsc/include/petscksp.h
/petsc/include/petscsys.h
/petsc/setup.py
/petsc/src/dm/dt/interface/f90-custom/zdtdsf90.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_2.out
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/mat/examples/tests/ex172.c
/petsc/src/mat/examples/tests/ex48.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex172.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/baij/seq/baijfact13.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/network/pflow/pf.c
/petsc/src/snes/examples/tutorials/output/ex19_10.out
/petsc/src/snes/examples/tutorials/output/ex19_13.out
/petsc/src/snes/examples/tutorials/output/ex19_6.out
/petsc/src/snes/examples/tutorials/output/ex19_7.out
/petsc/src/snes/examples/tutorials/output/ex19_9.out
/petsc/src/snes/examples/tutorials/output/ex19_ngmres_fas_ms.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out.html
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out.html
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/fileio/mprint.c
interface/taosolver.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/vec/is/ao/impls/mapping/aomapping.c
/petsc/systems/Apple/iOS/examples/SwiftExample/SwiftExample/AppDelegate.swift
/petsc/systems/Apple/iOS/examples/SwiftExample/SwiftExample/Base.lproj/LaunchScreen.xib
/petsc/systems/Apple/iOS/examples/SwiftExample/SwiftExample/Base.lproj/Main.storyboard
/petsc/systems/Apple/iOS/examples/SwiftExample/SwiftExample/Info.plist
/petsc/systems/Apple/iOS/examples/SwiftExample/SwiftExample/ViewController.swift
/petsc/tutorials/HandsOnExercise.html
e1bc860d24-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

fix formatting of some manual pages
specifically remove use of $ from the middle of parameter or options lists


/petsc/bin/maint/generateetags.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/PETSc/packages/Chaco.py
/petsc/config/PETSc/packages/MUMPS.py
/petsc/config/PETSc/packages/ml.py
/petsc/config/PETSc/packages/parmetis.py
/petsc/config/PETSc/packages/sowing.py
/petsc/include/finclude/ftn-custom/petscdmplex.h90
/petsc/include/finclude/ftn-custom/petscis.h90
/petsc/include/finclude/ftn-custom/petscmat.h90
/petsc/include/finclude/ftn-custom/petscvec.h90
/petsc/include/petscerror.h
/petsc/include/petsclog.h
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/2015.html
/petsc/src/docs/website/documentation/changes/2016.html
/petsc/src/docs/website/documentation/changes/2017.html
/petsc/src/docs/website/documentation/changes/2018-21.html
/petsc/src/docs/website/documentation/changes/2022.html
/petsc/src/docs/website/documentation/changes/2024.html
/petsc/src/docs/website/documentation/changes/2028.html
/petsc/src/docs/website/documentation/changes/2029.html
/petsc/src/docs/website/documentation/changes/21.html
/petsc/src/docs/website/documentation/changes/211.html
/petsc/src/docs/website/documentation/changes/212.html
/petsc/src/docs/website/documentation/changes/213.html
/petsc/src/docs/website/documentation/changes/215.html
/petsc/src/docs/website/documentation/changes/216.html
/petsc/src/docs/website/documentation/changes/220.html
/petsc/src/docs/website/documentation/changes/221.html
/petsc/src/docs/website/documentation/changes/230.html
/petsc/src/docs/website/documentation/changes/231.html
/petsc/src/docs/website/documentation/changes/232.html
/petsc/src/docs/website/documentation/changes/233.html
/petsc/src/docs/website/documentation/changes/300.html
/petsc/src/docs/website/documentation/changes/31.html
/petsc/src/docs/website/documentation/changes/32.html
/petsc/src/docs/website/documentation/changes/33.html
/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/mat/examples/tests/ex171f.F
/petsc/src/mat/examples/tests/ex48.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baijfact.c
/petsc/src/mat/impls/baij/seq/baijfact13.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/axpy.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/utils/str.c
interface/taosolver.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/vec/is/ao/impls/mapping/aomapping.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/tutorials/HandsOnExercise.html
baa89ecb21-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

added toggle and getter for PCJacobiSetUseAbs()
changed PCJacobiSetUseRowMax/Sum to SetType() and added a getter

fixed some test output

67b4f24521-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

PetscLogFlops() must always be passed as double from Fortran

c94a748e21-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/fix-options-default'

Conflicts:
src/ksp/ksp/examples/tutorials/ex52.c


/petsc/bin/configVars.py
/petsc/bin/maint/builddist
/petsc/bin/maint/generateetags.py
/petsc/conf/install.py
/petsc/config/BuildSystem/config/__init__.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Chaco.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/PaStiX.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/SuperLU_MT.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/Zoltan.py
/petsc/config/BuildSystem/config/packages/c2html.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/cusp.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/lgrind.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/ml.py
/petsc/config/BuildSystem/config/packages/mpi4py.py
/petsc/config/BuildSystem/config/packages/pARMS.py
/petsc/config/BuildSystem/config/packages/parmetis.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/BuildSystem/config/packages/ssl.py
/petsc/config/BuildSystem/config/packages/tetgen.py
/petsc/config/BuildSystem/config/regression/frameworkTest.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/config/types.py
/petsc/config/BuildSystem/config/utilities/FPTrap.py
/petsc/config/BuildSystem/config/utilities/__init__.py
/petsc/config/BuildSystem/config/utilities/cacheDetails.py
/petsc/config/BuildSystem/config/utilities/debuggers.py
/petsc/config/BuildSystem/config/utilities/featureTestMacros.py
/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py
/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py
/petsc/config/BuildSystem/config/utilities/missing.py
/petsc/config/BuildSystem/make.py
/petsc/config/BuildSystem/maker.py
/petsc/config/BuildSystem/nargs.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/Regression.py
/petsc/config/PETSc/options/__init__.py
/petsc/config/PETSc/options/arch.py
/petsc/config/PETSc/options/dataFilesPath.py
/petsc/config/PETSc/options/debugging.py
/petsc/config/PETSc/options/externalpackagesdir.py
/petsc/config/PETSc/options/fortranCPP.py
/petsc/config/PETSc/options/installDir.py
/petsc/config/PETSc/options/languages.py
/petsc/config/PETSc/options/libraryOptions.py
/petsc/config/PETSc/options/memAlign.py
/petsc/config/PETSc/options/petscclone.py
/petsc/config/PETSc/options/petscdir.py
/petsc/config/PETSc/options/scalarTypes.py
/petsc/config/PETSc/options/sharedLibraries.py
/petsc/config/PETSc/petsc.py
/petsc/config/builder.py
/petsc/config/cmakeboot.py
/petsc/config/configure.py
/petsc/config/examples/arch-linux-gcc-ifc-cmplx.py
/petsc/config/examples/arch-linux-gcc-pgf90.py
/petsc/include/finclude/petscdmdef.h
/petsc/include/finclude/petscsysdef.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/vecimpl.h
/petsc/include/petscblaslapack.h
/petsc/include/petscblaslapack_c.h
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/petsc/src/ksp/pc/impls/factor/factimpl.c
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/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/kaczmarz/kaczmarz.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mg/mg.c
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/petsc/src/ksp/pc/impls/sacusp/makefile
/petsc/src/ksp/pc/impls/sor/sor.c
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/petsc/src/mat/examples/tests/ex139.c
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/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/seqcusp/aijcusp.cu
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/mffd/wp.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/amd/amd.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tests/makefile
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex28.c
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/petsc/src/snes/impls/ncg/snesncg.c
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/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/tr/tr.c
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/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/sys/classes/draw/impls/opengl/openglops.c
/petsc/src/sys/classes/draw/utils/lg.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/threadcomm/impls/pthread/tcpthread.c
/petsc/src/sys/threadcomm/interface/threadcomm.c
/petsc/src/sys/utils/sseenabled.c
/petsc/src/sys/utils/str.c
bound/impls/gpcg/gpcg.c
bound/utils/isutil.c
complementarity/impls/ssls/ssls.c
constrained/impls/ipm/ipm.c
interface/taosolver.c
leastsquares/impls/pounders/pounders.c
linesearch/impls/armijo/armijo.c
linesearch/impls/owarmijo/owarmijo.c
linesearch/interface/taolinesearch.c
matrix/lmvmmat.c
pde_constrained/examples/tutorials/elliptic.c
pde_constrained/examples/tutorials/hyperbolic.c
pde_constrained/examples/tutorials/parabolic.c
pde_constrained/impls/lcl/lcl.c
unconstrained/impls/bmrm/bmrm.c
unconstrained/impls/cg/taocg.c
unconstrained/impls/neldermead/neldermead.c
unconstrained/impls/nls/nls.c
unconstrained/impls/ntl/ntl.c
unconstrained/impls/ntr/ntr.c
unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/ts/examples/tutorials/output/ex11_0.out
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/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu
/petsc/src/vec/vec/impls/seq/seqcusp/cuspvecimpl.h
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp.cu
/petsc/src/vec/vec/impls/seq/seqcusp/vecscattercusp.cu
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vpscat.h
/petsc/src/vec/vec/utils/vscat.c
/petsc/systems/Apple/OSX/bin/arch-osx-debug.py
/petsc/systems/Apple/OSX/bin/arch-osx-release.py
/petsc/systems/Apple/OSX/bin/makeall
/petsc/systems/Apple/OSX/bin/makeframework
/petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj
/petsc/systems/Apple/iOS/bin/arch-ios-simulator.py
/petsc/systems/Apple/iOS/bin/iosbuilder.py
/petsc/systems/Apple/iOS/bin/makeall
/petsc/systems/Apple/iOS/bin/makeframework
/petsc/systems/Apple/iOS/examples/Basic/examples.xcodeproj/project.pbxproj
/petsc/systems/Apple/iOS/examples/testopengl/examples.xcodeproj/project.pbxproj
/petsc/tutorials/HandsOnExercise.html
8afaa26813-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

update use of PetscOptionsBool() to not rely on default setting automatically

94ae4db513-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

cleanup of use of PetscOptionsInt and friends including use of flag final argument


/petsc/bin/maint/generateetags.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/PETSc/packages/Chaco.py
/petsc/config/PETSc/packages/MUMPS.py
/petsc/config/PETSc/packages/parmetis.py
/petsc/include/petsclog.h
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/2015.html
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/petsc/src/docs/website/documentation/changes/34.html
/petsc/src/docs/website/documentation/changes/index.html
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/parms/parms.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/mat/examples/tests/ex171f.F
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/amd/amd.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesob.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/sys/examples/tutorials/ex3.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/threadcomm/interface/threadcomm.c
/petsc/src/sys/utils/str.c
bound/impls/gpcg/gpcg.c
complementarity/impls/ssls/ssls.c
constrained/impls/ipm/ipm.c
interface/taosolver.c
leastsquares/impls/pounders/pounders.c
linesearch/impls/armijo/armijo.c
linesearch/impls/owarmijo/owarmijo.c
linesearch/interface/taolinesearch.c
matrix/lmvmmat.c
pde_constrained/examples/tutorials/elliptic.c
pde_constrained/examples/tutorials/hyperbolic.c
pde_constrained/examples/tutorials/parabolic.c
pde_constrained/impls/lcl/lcl.c
unconstrained/impls/bmrm/bmrm.c
unconstrained/impls/cg/taocg.c
unconstrained/impls/neldermead/neldermead.c
unconstrained/impls/nls/nls.c
unconstrained/impls/ntl/ntl.c
unconstrained/impls/ntr/ntr.c
unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex31.c
/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/systems/Apple/OSX/bin/makeall
/petsc/tutorials/HandsOnExercise.html
42cfbcdf04-Oct-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'maint'

Conflicts:
config/BuildSystem/config/packages/MPI.py


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/parmetis.py
/petsc/config/builder.py
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petsc-private/dmpleximpl.h
/petsc/include/petsc-private/dtimpl.h
/petsc/include/petsc-private/petscfeimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscdt.h
/petsc/include/petscksp.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/makefile
/petsc/src/dm/impls/plex/examples/tests/output/ex3_constraints.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_nonconforming_simplex_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_nonconforming_simplex_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_nonconforming_tensor_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex3_nonconforming_tensor_3.out
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/petsc/src/dm/impls/plex/plexpreallocate.c
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/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
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bound/impls/bqpip/bqpip.c
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e3f4de1829-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

remove d0 and d300 from tao examples

20bbc19129-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

reassemble hessian after bqpip sets diagonal

413a66b328-Sep-2014 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/feature-fe-fv-hybrid'

* knepley/feature-fe-fv-hybrid: (43 commits)
PetscFE: Small fixes
Plex+SNES: Volumes are PetscReal
Plex+SNES: Missing declaration
TS ex11: Remove

Merge branch 'knepley/feature-fe-fv-hybrid'

* knepley/feature-fe-fv-hybrid: (43 commits)
PetscFE: Small fixes
Plex+SNES: Volumes are PetscReal
Plex+SNES: Missing declaration
TS ex11: Remove unused var
Plex+SNES+TS: Complete reorganization of residual evaluation - Now both FE and FV examples use the same method, but there are a bunch of switches which should be eliminated - There is a confusion about IFunction and RHS, but I think they can both be in one function - Added DMPlexSNESGetGeometryFVM() and DMPlexSNESGetGradientFVM() - Added DMPlexGet/RestoreCellFields() and DMPlexGet/RestoreFaceFields() and DMPlexGet/RestoreFaceGeometry() - I think that FV geometry caching needs to be redone - Added DMPlexReconstructGradients_Internal() - Added DMPlexComputeBdResidual_Internal() which does not work for FV - Replaced DMPlexComputeResidualFEM_Internal() with DMPlexComputeResidual_Internal()
Plex: Added DMPlexInsertBoundaryValues() - Unified FE and FV boundary values
Plex: DMPlexProjectFunctionLableLocal() gets discretizations from the DM now
Plex: Added DMPlexComputeGradientFVM()
PetscDS: Fix up some functions to work for both FV and FE
PetscFV: Change PetscFVIntegrateRHSFunction() to get info from PetscDS
TS ex11: There is only one field in our current paradigm - We would need to split Riemann solvers for multiple fields right now
Plex+TS: Remove use of computeGradients in favor of check for dmGrad
TS ex11: Updated interface calls
Plex+TS: Change DMPlexTSGetGradientDM() to automatically construct the gradient info, DMPlexTSSetRHSFunctionLocal() can now be replaced by the DMTS version - Remove unnecessary declarations
Plex+SNES: Add missing declaration
Plex+FE: Removed all use of PetscCellGeometry, Changed FE integration to use PetscFECellGeom
DMSNES+Plex: Added DMPlexSNESGetGeometryFEM() to cache geometry
PetscDualSpace: Remove use of PetscCellGeometry in PetscDualSpaceApply() - Fixed up calls to it for projection into spaces
DMDA: Remove use of PetscCellGeometry in DMDAProjectFunctionLocal()
Plex: Added DMPlexComputeGeometryFEM() and PetscFECellGeom structure
...

show more ...

be1558d824-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

clarify documention on ksp count in history

2d9aa51b24-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

tao->ksp_its is per iteration, tao->ksp_tot_its is per solve


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728e0ed017-Sep-2014 Barry Smith <bsmith@mcs.anl.gov>

removed Tao use of antediluvian PETSC_C_BEGIN/END with PETSC_EXTERN for Tao implementation class constructors

903a25dc16-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

Merge branch 'adam_qc/add-taogetcurrentfunctionevaluations' of /home/sarich/petsc-remotes into adam_qc/add-taogetcurrentfunctionevaluations


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interface/taosolver.c
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70f1b95b11-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

Merge branch 'sarich/fix-tao-pounders-repeating'

1665313011-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

Merge branch 'sarich/fix-tao-pounders-repeating' into maint

c937658111-Sep-2014 Jason Sarich <sarich@mcs.anl.gov>

redo petsc bool operations

c9ef06ad10-Sep-2014 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'maint'

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