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d9e171d606-Aug-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'denera/tao-blmvm-recycle-missing-example' [PR #1059]

* denera/tao-blmvm-recycle-missing-example:
Simple rosenbrock test for LMVM recycling.
We had this example before in the code but s

Merge branch 'denera/tao-blmvm-recycle-missing-example' [PR #1059]

* denera/tao-blmvm-recycle-missing-example:
Simple rosenbrock test for LMVM recycling.
We had this example before in the code but somewhere along the way it seems to have disappeared.
Adding it back in now to make sure the functionality is tested.
Thanks to @adenchfi for bringing it to our attention.

show more ...


/petsc/include/petsctao.h
bound/impls/blmvm/blmvm.c
unconstrained/examples/tutorials/output/rosenbrock2_1.out
unconstrained/examples/tutorials/rosenbrock2.c
b99af1fd04-Aug-2018 Barry Smith <bsmith@mcs.anl.gov>

initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized.

Commit-type: testing-fix
Reported-by: clang static analyzer


/petsc/include/petscctable.h
/petsc/include/petscdmda.h
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/da/da2.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
constrained/impls/ipm/ipm.c
f5a7d1c104-Aug-2018 Barry Smith <bsmith@mcs.anl.gov>

Missing CHKERRQ(); Mostly in Tao code

Commit-type: testing-fix,style-fix
Reported-by: clang static analyzer


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/packages/SuperLU.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscoptions.h
/petsc/include/petscts.h
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/39.html
/petsc/src/docs/website/documentation/tutorials/HandsOnExercise.html
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_1.out
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/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2.out
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/lmvmimpl.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/lmvm/lmvmpc.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex127.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.F
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.h
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3_alt.out
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/petsc/src/snes/examples/tutorials/output/ex19_tut_8_alt.out
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/str.c
bound/impls/bncg/bncg.c
bound/impls/bnk/bnk.c
pde_constrained/impls/lcl/lcl.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/output/ex11_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_3.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_4.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_3.out
/petsc/src/ts/interface/ts.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vscat/examples/ex5.c
/petsc/src/vec/vscat/examples/makefile
/petsc/src/vec/vscat/examples/output/ex5_1.out
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/impls/vscat.c
1953e42603-Aug-2018 Alp Dener <alp.dener@me.com>

minor fixes for integer counters


unconstrained/examples/tutorials/rosenbrock2.c
bddd1ffd03-Aug-2018 Alp Dener <alp.dener@me.com>

MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods.


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/packages/SuperLU.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/tutorials/HandsOnExercise.html
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2.out
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex127.c
/petsc/src/mat/examples/tests/ex4.c
/petsc/src/mat/examples/tests/ex99.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex99_1.out
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/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.F
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.h
/petsc/src/mat/impls/submat/submat.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3_alt.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_4.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_5.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_6.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_7.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8_alt.out
bound/impls/bnk/bnk.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/output/ex11_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_3.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_4.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_3.out
b39c12a902-Aug-2018 Alp Dener <alp.dener@me.com>

added missing test for recycling the QN approximation in LMVM algorithms


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/packages/SuperLU.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petsctao.h
/petsc/src/docs/tex/manual/part2.tex
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/petsc/src/ksp/ksp/examples/tests/ex33.c
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/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_1.out
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/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2.out
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex127.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.F
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.h
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out
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/petsc/src/snes/examples/tutorials/output/ex19_tut_5.out
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/petsc/src/snes/examples/tutorials/output/ex19_tut_7.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8_alt.out
bound/impls/blmvm/blmvm.c
unconstrained/examples/tutorials/output/rosenbrock2_1.out
unconstrained/examples/tutorials/rosenbrock2.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/output/ex11_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_3.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_4.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_3.out
cf0b7c1130-Jul-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'barry/clarify-dmplex-documentation' [PR #917]

* barry/clarify-dmplex-documentation:
Rename DM[GS]etDefault{Global}Section() to DM[GS]et{Global}Section().
Add DMPlexComputeGeometryFEM()


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/packages/ADIOS.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-jenkins-freebsd-c-single-opt.py
/petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-jenkins-linux-gcc-complex-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-jenkins-mswin-cxx-complex-dbg.py
/petsc/config/examples/arch-jenkins-mswin-double-opt.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/config/install.py
/petsc/config/report_tests.py
/petsc/include/petsc/finclude/petscviewer.h
/petsc/include/petsc/private/dmpleximpl.h
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/petsc/include/petsc/private/vieweradios2impl.h
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/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscviewer.h
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/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
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/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
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/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
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/petsc/src/dm/impls/plex/plexglvis.c
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/petsc/src/docs/tex/manual/part1.tex
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/petsc/src/ksp/ksp/examples/tutorials/ex67.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_transpose_asm.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/mat/examples/tests/ex226.c
/petsc/src/mat/examples/tests/makefile
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/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios/makefile
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/adios2/makefile
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/makefile
/petsc/src/sys/classes/viewer/interface/viewregall.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/python/pythonsys.c
examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/impls/mimex/mimex.c
/petsc/src/vec/vec/examples/tutorials/ex10.c
/petsc/src/vec/vec/examples/tutorials/output/ex10_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_3.out
/petsc/src/vec/vec/examples/tutorials/output/ex10_4.out
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/petsc/src/vec/vec/examples/tutorials/output/ex10_6.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vecio.c
8732526d23-Jul-2018 Alp Dener <alp.dener@me.com>

Fixed segfault for user-defined monitor destroy function in Fortran.

Tao custom Fortran interfaces overhauled to use Petsc callback functions instead of handling function pointers manually.

Duplica

Fixed segfault for user-defined monitor destroy function in Fortran.

Tao custom Fortran interfaces overhauled to use Petsc callback functions instead of handling function pointers manually.

Duplicate monitor handling corrected in TaoSetMonitor() routine.

show more ...


/petsc/Jenkinsfile
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscviewer.h
/petsc/src/dm/examples/tests/ex47.c
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/petsc/src/dm/impls/da/gr2.c
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/petsc/src/dm/impls/plex/plex.c
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex9_1.out
/petsc/src/snes/examples/tutorials/output/ex9_2.out
/petsc/src/snes/examples/tutorials/output/ex9_3.out
/petsc/src/snes/examples/tutorials/output/ex9_4.out
/petsc/src/snes/examples/tutorials/output/ex9_5.out
/petsc/src/snes/examples/tutorials/output/ex9_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex9_6.out
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
interface/ftn-custom/ztaosolverf.c
interface/taosolver.c
unconstrained/examples/tutorials/eptorsion2f.F
unconstrained/examples/tutorials/output/eptorsion2f_3.out
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat.h
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/vscat.c
1d56a8f419-Jul-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'denera/tao-linesearch-monitor' [PR #1032]

* denera/tao-linesearch-monitor:
ASCII iteration monitor added to TAO line searches.
Simplified implementation compared to other monitors in P

Merge branch 'denera/tao-linesearch-monitor' [PR #1032]

* denera/tao-linesearch-monitor:
ASCII iteration monitor added to TAO line searches.
Simplified implementation compared to other monitors in PETSc.
Custom user monitors are not supported.
Intended only to be a diagnostic tool for various scalar line search parameters.

show more ...


/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petsctaolinesearch.h
linesearch/impls/armijo/armijo.c
linesearch/impls/gpcglinesearch/gpcglinesearch.c
linesearch/impls/morethuente/morethuente.c
linesearch/impls/morethuente/morethuente.h
linesearch/impls/owarmijo/owarmijo.c
linesearch/impls/unit/unit.c
linesearch/interface/taolinesearch.c
unconstrained/examples/tutorials/output/rosenbrock1_20.out
unconstrained/examples/tutorials/rosenbrock1.c
4d78710c19-Jul-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'tmunson/tao-pounders-bug-fixes' [PR #1024]

* tmunson/tao-pounders-bug-fixes:
TAO Pounders has been significantly improved to more closely match its published results with the Matlab im

Merge branch 'tmunson/tao-pounders-bug-fixes' [PR #1024]

* tmunson/tao-pounders-bug-fixes:
TAO Pounders has been significantly improved to more closely match its published results with the Matlab implementation.

show more ...


/petsc/config/BuildSystem/config/packages/pragmatic.py
/petsc/config/examples/arch-cuda-double.py
/petsc/config/examples/arch-cuda-single.py
/petsc/config/examples/arch-mswin-cuda.py
/petsc/gmakefile
/petsc/include/petsc/mpiuni/mpif.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscoptions.h
/petsc/src/dm/impls/plex/examples/tests/ex12.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_12.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_13.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_14.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_15.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_9.out
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/mat/examples/tests/ex225.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex225_1.out
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/hypre/mhypre.h
/petsc/src/snes/examples/tests/ex17.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/examples/tests/ex20.c
/petsc/src/sys/examples/tests/ex38f.F90
/petsc/src/sys/examples/tests/ex5.c
/petsc/src/sys/examples/tests/ex6.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex38f_1.out
/petsc/src/sys/examples/tests/output/ex6_1.out
/petsc/src/sys/examples/tutorials/output/ex5_yaml.out
/petsc/src/sys/mpiuni/f90-mod/mpiunimod.F
/petsc/src/sys/mpiuni/fsrc/somempifort.F
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/destroy.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pinit.c
leastsquares/examples/tutorials/chwirut1.c
leastsquares/examples/tutorials/chwirut1f.F90
leastsquares/examples/tutorials/chwirut2.c
leastsquares/examples/tutorials/chwirut2f.F90
leastsquares/examples/tutorials/output/chwirut1_1.out
leastsquares/examples/tutorials/output/chwirut1_1_alt.out
leastsquares/examples/tutorials/output/chwirut1f_1.out
leastsquares/examples/tutorials/output/chwirut1f_1_alt.out
leastsquares/examples/tutorials/output/chwirut2_1.out
leastsquares/examples/tutorials/output/chwirut2_1_alt.out
leastsquares/examples/tutorials/output/chwirut2_1_alt_2.out
leastsquares/examples/tutorials/output/chwirut2f_1.out
leastsquares/examples/tutorials/output/chwirut2f_1_alt.out
leastsquares/impls/pounders/pounders.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5opt_ic_1.out
/petsc/src/ts/examples/tutorials/ex43.c
/petsc/src/vec/vec/examples/tests/ex43.c
4aaf786618-Jul-2018 Alp Dener <alp.dener@gmail.com>

another alt file to account for Inf function on first iteration


leastsquares/examples/tutorials/output/chwirut2_1_alt_2.out
f8d8357918-Jul-2018 Alp Dener <alp.dener@gmail.com>

code style fixes


/petsc/include/petsc/private/taolinesearchimpl.h
linesearch/impls/armijo/armijo.c
linesearch/impls/morethuente/morethuente.c
linesearch/interface/taolinesearch.c
ceac47fc16-Jul-2018 Alp Dener <alp.dener@gmail.com>

alt files for archs with optimized BLAS impls


leastsquares/examples/tutorials/output/chwirut1_1_alt.out
leastsquares/examples/tutorials/output/chwirut1f_1_alt.out
leastsquares/examples/tutorials/output/chwirut2_1_alt.out
leastsquares/examples/tutorials/output/chwirut2f_1_alt.out
ec9ced1416-Jul-2018 Alp Dener <alp.dener@gmail.com>

typo in jbearing test flag on single precision


bound/examples/tutorials/jbearing2.c
0243604915-Jul-2018 Alp Dener <alp.dener@gmail.com>

Test updates and bug fixes:
- Added new tests for previously untested LMVM scaling types.
- Slightly changed MATSHELL safeguard on the Hessian to avoid shifts for all virtual inactive submats.
- Typo

Test updates and bug fixes:
- Added new tests for previously untested LMVM scaling types.
- Slightly changed MATSHELL safeguard on the Hessian to avoid shifts for all virtual inactive submats.
- Typo fixed in test flags and associated outputs updated.

show more ...


bound/examples/tutorials/jbearing2.c
bound/examples/tutorials/output/jbearing2_13.out
bound/examples/tutorials/output/jbearing2_14.out
bound/examples/tutorials/output/jbearing2_15.out
bound/examples/tutorials/output/jbearing2_17.out
bound/examples/tutorials/output/jbearing2_18.out
bound/examples/tutorials/output/jbearing2_7.out
bound/examples/tutorials/output/jbearing2_8.out
bound/examples/tutorials/output/jbearing2_9.out
bound/impls/bnk/bnk.c
e770988913-Jul-2018 Alp Dener <alp.dener@gmail.com>

code style cleanup


linesearch/impls/armijo/armijo.c
linesearch/impls/gpcglinesearch/gpcglinesearch.c
linesearch/impls/morethuente/morethuente.c
linesearch/impls/owarmijo/owarmijo.c
2a0dac0713-Jul-2018 Alp Dener <alp.dener@gmail.com>

Rudimentary ASCII monitor functionality added to Tao line searches


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pragmatic.py
/petsc/gmakefile
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/mpiuni/mpif.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petsctaolinesearch.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tests/ex46.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex46_1.out
/petsc/src/dm/examples/tests/output/ex46_2.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex2f90.F90
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex23_1.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_parmetis.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_ptscotch.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_seq.out
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/mat/examples/tests/ex111.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex40.c
/petsc/src/mat/examples/tests/ex55.c
/petsc/src/mat/examples/tests/ex73.c
/petsc/src/mat/examples/tests/output/ex111_1.out
/petsc/src/mat/examples/tests/output/ex111_2.out
/petsc/src/mat/examples/tests/output/ex23_1.out
/petsc/src/mat/examples/tests/output/ex23_10.out
/petsc/src/mat/examples/tests/output/ex23_11.out
/petsc/src/mat/examples/tests/output/ex23_2.out
/petsc/src/mat/examples/tests/output/ex23_3.out
/petsc/src/mat/examples/tests/output/ex23_4.out
/petsc/src/mat/examples/tests/output/ex23_5.out
/petsc/src/mat/examples/tests/output/ex23_6.out
/petsc/src/mat/examples/tests/output/ex23_7.out
/petsc/src/mat/examples/tests/output/ex23_8.out
/petsc/src/mat/examples/tests/output/ex23_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matreg.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/examples/tests/ex1f.F90
/petsc/src/sys/examples/tests/ex38f.F90
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex38f_1.out
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fsrc/somefort.F
/petsc/src/sys/mpiuni/f90-mod/mpiunimod.F
/petsc/src/sys/mpiuni/fsrc/somempifort.F
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
linesearch/impls/armijo/armijo.c
linesearch/impls/gpcglinesearch/gpcglinesearch.c
linesearch/impls/morethuente/morethuente.c
linesearch/impls/morethuente/morethuente.h
linesearch/impls/owarmijo/owarmijo.c
linesearch/impls/unit/unit.c
linesearch/interface/taolinesearch.c
unconstrained/examples/tutorials/output/rosenbrock1_20.out
unconstrained/examples/tutorials/rosenbrock1.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
45ca1e7212-Jul-2018 Alp Dener <alp.dener@gmail.com>

added safeguard for MATSHELL Hessians


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/libraries.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/examples/tests/ex46.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex46_1.out
/petsc/src/dm/examples/tests/output/ex46_2.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex2f90.F90
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex23_1.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex29.c
/petsc/src/ksp/ksp/examples/tutorials/ex34.c
/petsc/src/ksp/ksp/examples/tutorials/ex54.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex54_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_seqaijmkl.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_parmetis.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_ptscotch.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_seq.out
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcfetidp.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/mat/examples/tests/ex111.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex40.c
/petsc/src/mat/examples/tests/ex55.c
/petsc/src/mat/examples/tests/ex73.c
/petsc/src/mat/examples/tests/output/ex111_1.out
/petsc/src/mat/examples/tests/output/ex111_2.out
/petsc/src/mat/examples/tests/output/ex23_1.out
/petsc/src/mat/examples/tests/output/ex23_10.out
/petsc/src/mat/examples/tests/output/ex23_11.out
/petsc/src/mat/examples/tests/output/ex23_2.out
/petsc/src/mat/examples/tests/output/ex23_3.out
/petsc/src/mat/examples/tests/output/ex23_4.out
/petsc/src/mat/examples/tests/output/ex23_5.out
/petsc/src/mat/examples/tests/output/ex23_6.out
/petsc/src/mat/examples/tests/output/ex23_7.out
/petsc/src/mat/examples/tests/output/ex23_8.out
/petsc/src/mat/examples/tests/output/ex23_9.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matreg.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/examples/tests/ex1f.F90
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/f90-mod/petscsysmod.F
/petsc/src/sys/fsrc/somefort.F
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/ftn-custom/zstartf.c
bound/impls/bnk/bnk.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/utils/isltog.c
fe2b063809-Jul-2018 Alp Dener <alp.dener@gmail.com>

underscored removed from BLAS routine name strings


leastsquares/impls/pounders/pounders.c
343118fe09-Jul-2018 Alp Dener <alp.dener@gmail.com>

test problems outputs updated


leastsquares/examples/tutorials/chwirut1.c
leastsquares/examples/tutorials/chwirut1f.F90
leastsquares/examples/tutorials/chwirut2.c
leastsquares/examples/tutorials/chwirut2f.F90
leastsquares/examples/tutorials/output/chwirut1_1.out
leastsquares/examples/tutorials/output/chwirut1f_1.out
leastsquares/examples/tutorials/output/chwirut2_1.out
leastsquares/examples/tutorials/output/chwirut2f_1.out
94e8dcca06-Jul-2018 Todd Munson <tmunson@mcs.anl.gov>

Correct array generation in parallel case.

Correct usage of the tensor matrix.


leastsquares/impls/pounders/pounders.c
fedd2e4c05-Jul-2018 Todd Munson <tmunson@mcs.anl.gov>

Squashed a big bug in the serial code with no weights.


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/src/dm/examples/tests/ex46.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex46_1.out
/petsc/src/dm/examples/tests/output/ex46_2.out
/petsc/src/dm/field/impls/da/dmfieldda.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddc.h
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/interface/matreg.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_allp.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_deluxe_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_discharm.out
/petsc/src/snes/examples/tutorials/output/ex69_p2p1fetidp_lumped.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/utils/dmplexsnes.c
leastsquares/impls/pounders/pounders.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/utils/isltog.c
9515a40103-Jul-2018 Alp Dener <alp.dener@gmail.com>

reverting back to using shared MatSolve interface


/petsc/include/petscksp.h
/petsc/src/ksp/ksp/utils/lmvm/badbrdn/badbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/lmvm.h
/petsc/src/ksp/ksp/utils/lmvm/lmvmutils.c
/petsc/src/ksp/ksp/utils/lmvm/sr1/sr1.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/lmvm/lmvmpc.c
/petsc/src/mat/interface/matrix.c
bound/impls/blmvm/blmvm.c
bound/impls/bnk/bnk.c
bound/impls/bqnls/bqnls.c
pde_constrained/impls/lcl/lcl.c
unconstrained/examples/tutorials/rosenbrock1.c
unconstrained/impls/lmvm/lmvm.c
unconstrained/impls/owlqn/owlqn.c
488f980d03-Jul-2018 Alp Dener <alp.dener@gmail.com>

Merge branch 'master' into denera/lmvm-mat-and-pc


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/PETSc/Configure.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/taolinesearchimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/share/petsc/datafiles/meshes/hybrid_tetwedge.msh
/petsc/share/petsc/datafiles/meshes/hybrid_triquad.msh
/petsc/share/petsc/datafiles/meshes/surfacesphere_bin.msh
/petsc/src/dm/examples/tutorials/ex11f90.F90
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/f90-custom/zda1f90.c
/petsc/src/dm/impls/da/grvtk.c
/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_box_wedge_s2t_parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_cylinder_wedge.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_13_hybs2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_14_ext_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_15_hyb3d_vtk.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_extruded_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_16_spheresurface_s2t.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_2d_s2t_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex4_hybint_3d_s2t_1.out
/petsc/src/dm/impls/plex/glexg.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/plex/plexvtu.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/ArgonneReportTemplate.doc
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018.docx
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018LastPage.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplate2018Page2.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplateLastPage.pdf
/petsc/src/docs/tex/manual/ArgonneReportTemplatePage2.pdf
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tutorials/ex44f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex6f.F90
/petsc/src/ksp/ksp/examples/tutorials/network/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex15_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex15f_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex1_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex28_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_bjacobi_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_hypre_nullspace.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_nonsymmetric_left.out
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/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/tsirm/tsirm.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/utils/schurm/schurm.c
/petsc/src/ksp/pc/examples/tests/output/ex6_1.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/fieldsplit/ftn-custom/zfieldsplitf.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex214.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/examples/tests/ex9.c
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/petsc/src/mat/examples/tutorials/output/ex15_2.out
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/blockmat/seq/blockmat.c
/petsc/src/mat/impls/is/matis.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/transpose/transm.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/snes/examples/tutorials/ex15.c
/petsc/src/snes/examples/tutorials/ex70.c
/petsc/src/snes/examples/tutorials/ex99.c
/petsc/src/snes/examples/tutorials/output/ex12_amr_1.out
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/petsc/src/snes/impls/multiblock/multiblock.c
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/petsc/src/snes/impls/ngmres/anderson.c
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/petsc/src/snes/impls/richardson/snesrichardson.c
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/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/dlregissnes.c
/petsc/src/snes/interface/noise/snesdnest.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/noise/snesnoise.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/random/examples/tutorials/ex2.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
/petsc/src/sys/classes/viewer/impls/ascii/asciiimpl.h
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.h
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
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/petsc/src/sys/dll/reg.c
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/petsc/src/sys/error/signal.c
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/petsc/src/sys/fileio/mprint.c
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/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/ftn-custom/zplogf.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/memory/mem.c
/petsc/src/sys/memory/mhbw.c
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/petsc/src/sys/utils/pbarrier.c
/petsc/src/sys/utils/str.c
/petsc/src/sys/yaml/yamlimpls.c
interface/dlregistao.c
interface/taosolver.c
interface/taosolver_bounds.c
interface/taosolver_fg.c
interface/taosolver_hj.c
interface/taosolverregi.c
linesearch/interface/dlregis_taolinesearch.c
linesearch/interface/taolinesearch.c
matrix/adamat.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/slregis.c
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/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/ex6_1.out
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/vec/is/ao/interface/dlregisdm.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/utils/isblock.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/examples/tests/output/ex32f_1.out
/petsc/src/vec/vec/examples/tests/output/ex41_1.out
/petsc/src/vec/vec/examples/tutorials/ex21.c
/petsc/src/vec/vec/examples/tutorials/output/ex4f_1.out
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vscat/impls/vpscat.c
/petsc/src/vec/vscat/impls/vpscat_mpi1.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
a6cf437203-Jul-2018 Alp Dener <alp.dener@gmail.com>

small bug fix in symbrdn options and resolved ex3 failure


/petsc/src/ksp/ksp/utils/lmvm/bfgs/bfgs.c
/petsc/src/ksp/ksp/utils/lmvm/dfp/dfp.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h
examples/tutorials/ex3.c

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