checkbadSource: rules for PetscFunctionBegin and derivatives

Fix words appearing twice in a row for no good reason

Remove duplicates and switch to python3

TS ex11: - Added a new macro `zero` with the value 0.0. - Modified the function `PhysicsRiemann_SW_Rusanov` to handle negative heights. - Replaced a block of code that printed debug information with

TS ex11: - Added a new macro `zero` with the value 0.0. - Modified the function `PhysicsRiemann_SW_Rusanov` to handle negative heights. - Replaced a block of code that printed debug information with a simpler implementation using the `zero` macro. <Move these> - Added a new variable `strides` to store stride values, previous used CEED default type. - Modified the call to `CeedElemRestrictionCreateStrided` to use the `strides` array.

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Some Tao monitor options are incorrectly called viewers, yikes and more yikes

Correct ``-tao_view_gradient``, ``-tao_view_ls_residual``, ``-tao_view_solution``, and ``-tao_view_stepdirection`

Sys: add PetscOptions[Bounded|Range]Real()

Merge branch 'adams/swarm-normal-dist-test' into 'main'

DMSwarm: add normal distribution, clean up entropy calc, ex30

See merge request petsc/petsc!7203

DMSwarm: add normal distribution, clean up entropy calc, ex30

Merge branch 'barry/2024-01-19/typedef-snes-functions' into 'main'

add typedef for functions passed to SNESSetFunction() etc to match approach in TS

See merge request petsc/petsc!7206

Change the use of the _Fn suffix to indicate a typedef of a function to just Fn

As determined on a vote on GitLab

Update `PetscSimplePointFunc` to new naming convention `PetscSimplePoint_Fn`

Commit-type: housekeeping

Change PETSc sys typedef function names to use the new _Fn format

Commit-type: housekeeping, maintainance

Convert TS typedef functions to new style ending with _Fn

Commit-type: housekeeping, maintainability

Fix places where PetscUseTypeMethod() and related macros should be used.

Update example output

Merge branch 'stefanozampini/dmplexforest' into 'main'

Updates to DMPLEX and DMFOREST

See merge request petsc/petsc!7217

Merge branch 'jolivet/petsctrytypemethod' into 'main'

Use Petsc[Use|Try]TypeMethod when possible

See merge request petsc/petsc!7213

DMPLEXFEM: fix auxiliary vector cases

Merge remote-tracking branch 'origin/release'

Use PetscTryTypeMethod when possible

fix bug in TSResize() with memory allocation.

Reported-by: Ilya Fursov <ilya.foursov.7bd@gmail.com>

TS: fix LogEvent calls

need to sync with the state vector, not the TS object itself
This is because the TS callbacks are used for local nonlinear solves that synchronize on the local SNES or the loc

TS: fix LogEvent calls

need to sync with the state vector, not the TS object itself
This is because the TS callbacks are used for local nonlinear solves that synchronize on the local SNES or the local DM

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Merge branch 'adams/landau-dmswarm-example-entropy' into 'main'

DMSwarm Landau example: add entropy diagnostic

See merge request petsc/petsc!7163

Merge remote-tracking branch 'origin/release'

Updates, copyedits for first part of users manual