Section: Add a point major flag to allow different dog orderings- Does not do anything right now
Merge branch 'master' into knepley/feature-pc-patch* master: Add variable point block Jacobi for MPIAIJ matrix. should not pass user contexts through CHKFORTRANNULLOBJECT in Fortran stubs Rem
Merge branch 'master' into knepley/feature-pc-patch* master: Add variable point block Jacobi for MPIAIJ matrix. should not pass user contexts through CHKFORTRANNULLOBJECT in Fortran stubs Remove CHKFORTRANNULLOBJECTDEREFERENCE since it is no longer needed with Fortran null equal to C null Change Fortran null pointer to match C null pointerConflicts: src/ksp/ksp/interface/itfunc.c
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PetscSection: Cleanup point iteration in SetUp()
Merge remote-tracking branch 'origin/barry/change-fortran-null'
Merge branch 'master' into knepley/feature-pc-patch* master: (131 commits) fix mpiuni test PETSCFEOPENCL: declare PetscFEGetTabulation_Basic as external PETSCFEOPENCL: declare PetscFESetUp_Ba
Merge branch 'master' into knepley/feature-pc-patch* master: (131 commits) fix mpiuni test PETSCFEOPENCL: declare PetscFEGetTabulation_Basic as external PETSCFEOPENCL: declare PetscFESetUp_Basic as external one more fix jenkins: run 'cleantest' after examples are run - to recover diskspace logical order bug in diagbrdn update fixed, tests updated again replace new -petscspace_order instances with -petscspace_degree PETSCSPACETENSOR: clear up naming confusion of subspaces regression.py: remove configure code related to old test suite - now that SLEPc no longer needs it PetscSpaceSetup_Poly(): make idempotent Plex ex3: update tests Lift changes to defunct dtfe.c from [PR #1074] PetscSpace_Tensor: clarification of vector-valued PetscSpace_Tensor: allow height subspaces, fixes tabulation initialization PetscSpace: add a dimension member PetscSpaceSetDegree(): now take maxDegree argument -petscspacepoly_tensor -> -petscspace_type tensor PetscSpaceEvaluate_Polynomial(): fix temp array dependencies PETSCSPACETENSOR: A generic tensor product of spaces. PetscSpace: -petscspace_order -> -petscspace_degree ...Conflicts: src/dm/dt/interface/dtfe.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex17.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/output/ex62_bddc_quad.out src/snes/examples/tutorials/output/ex62_fetidp_2d_quad.out src/snes/examples/tutorials/output/ex62_fetidp_2d_tri.out src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
Remove CHKFORTRANNULLOBJECTDEREFERENCE since it is no longer needed with Fortran null equal to C nullCommit-type: feature
ISConcatenate: support NULL is in list
Merge branch 'master' into knepley/feature-pc-patch* master: (281 commits) compile fixes (workarround PGI bug?): 1) Look for 64 bit integer MKL BLAS if 64 bit indices are used with PETSc 2) Fix
Merge branch 'master' into knepley/feature-pc-patch* master: (281 commits) compile fixes (workarround PGI bug?): 1) Look for 64 bit integer MKL BLAS if 64 bit indices are used with PETSc 2) Fix Pardiso code to only compile pardiso_init64 when needed, otherwise can generate warnings/errors jenkins: run 'cleantest' before 'allgtest-tap' - an attempt to fix errors of type: cuda: protect cuda includes fix cuda warnings. fix complex compile error Revert "Improved polymorphism of interfaces for MatSetValuesBlocked()" Bib: Updated ref Doc: More function documentation petscvec: move PetscSFCreateFromZero from vscat to vec sources Mat: obey options prefix of Mat in MatNullSpaceTest Plex+SNES: Must pass user context through vscat: move ftn-custom to correct location remove custom vecscatterdestroy_() vscat: move interface routines to correct location vscat: delete dead code fix compile error FE: Correct coordinates in IntegrateBd Bib: Added refs SNES ex17: 3D tests must require a 3D grid generator Plex+TS: We cannot run the check with the same vector that is the TS solution ...Conflicts: include/petsc/private/dmpleximpl.h src/docs/website/documentation/changes/dev.html src/snes/examples/tutorials/ex13.c src/snes/utils/dmplexsnes.c
Merge branch 'knepley/feature-plex-functionals' [PR #1074]* knepley/feature-plex-functionals:Plex: Added support for integrating on boundariesThis is just a utility routine for integrating on bou
Merge branch 'knepley/feature-plex-functionals' [PR #1074]* knepley/feature-plex-functionals:Plex: Added support for integrating on boundariesThis is just a utility routine for integrating on boundaries. It is intended for use in optimization loops.
PetscSection: PetscSectionGetField() should not increase the reference count
Merge branch 'maint'
DM+IS: Moved a caching function into IS itself
ISSetBlockSize_General: removed blockwise contiguity check.It's no longer relevant and can lead to segfaults.
Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComp
Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComplex type is missing from fortran initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized. Move access of prefix until it is actually used Remove DMDASplitComm2d(), used in one example that was not tested Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm remove unneeded reassignment of same value Missing CHKERRQ(); Mostly in Tao code Remove clang static analyser warning about passing NULL variable to strncat() missing newline in -ts_monitor_extreme minor fixes for integer counters Configure: Deal with '__func__' in C89 builds with newer Clang and GCC. Jenkinsfile: Increased timeout for tests to 5 minutes. 3.9 changes: further clarify removal of -pc_factor_mat_solver_package Options deprecations: add "PETSc" to inline warning removing unused variable MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods. Add -ts_monitor_extreme Dev manual: add note on deprecating options database keys ...Conflicts: src/dm/impls/plex/examples/tests/ex4.c
IS: Move IS utilities out of SNES
Merge branch 'master' into knepley/feature-pc-patch* master: (226 commits) fix bib type in bibtex entry copy edits to bibtex items Hypre matrix: small fix Hypre matrix: fixed compiler war
Merge branch 'master' into knepley/feature-pc-patch* master: (226 commits) fix bib type in bibtex entry copy edits to bibtex items Hypre matrix: small fix Hypre matrix: fixed compiler warnings Plex: Fixed missing PetscRealPart() in partition balance. Added MatZeroEntries_HYPRE Removed outdated mention of cusp and thrust from installations instructions; remove cusp from example configurations Remove another location where fshift was used with -1 to indicate handling of error condition which was never handled Generate an immediate error, if requested, if CG detects indefinite PC or Mat Remove hack of using special fshift value of -1 to indicate error handling, was broken for MatSOR_SeqAIJ and did nothing constructive in the other cases Options: Fix sys_tests-ex6 to not print options PetscOptionsDestroy: Add missing free() call Configure: Pragmatic now requires Cxx11 Error check that the communicator in the IS matches that in the matrix otherwise ISAllGather() produces incorrect results. Options: Code reorganization and faster option lookup fix compile warning Doc: Fixed manpage for PCFieldSplitSetSchurPre() mpiuni: build somempifort.o after mpiuni.mod Remove use of common block from MPIUNI code ...Conflicts: include/petscdm.h include/petscpc.h include/petscpctypes.h src/dm/impls/plex/plexcreate.c src/dm/impls/plex/plexdistribute.c src/ksp/pc/impls/makefile src/ksp/pc/interface/pcregis.c
ISColoring: Add support for computing numbering and count through interface
ISLocalToGlobalMapping: add ISLocalToGlobalMapping{Get|Restore}NodeInfo to avoid code duplication
ISView_General: added PETSC_VIEWER_ASCII_INDEX format case
ISInvertPermutation_General: support for PETSC_DECIDE
Merge remote-tracking branch 'origin/maint'
DOC: minor fix
IS: use same comm in ISExpandIndicesGeneral ISCompressIndicesGeneral
Array pointer was mistakenly listed as PetscScalar in manual pagesCommit-type: documentationThanks-to: Seung-Hoe Ku <in.the.rain@gmail.com>
Merge branch 'master' into knepley/feature-pc-patch* master: (107 commits) cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for
Merge branch 'master' into knepley/feature-pc-patch* master: (107 commits) cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for DrMemory which may serve as an alternative to valgrind on Windows Finish Gail's copyedits for developers manual. openmpi: fix namespace conflict [with static build on ppc64le] two pages of Gail's edits to developers guide Another chapter of Gail's copyedits for the developers guide Gail's copyedits on two more chapters of the developers guide Fix more %d to %D in GAMG code. Fix code style in GAMG code DMPlexVTK: vertices is int! need to use %d instead of %D TS ex18: update outputs (reported by nightly tests) Use %D in error messages for GAMG hash; fix style issues with GAMG hash config: Update petsc4py git commit Fix bad plain extern declaration. Add Gail's copyedits for the initial portion of the developers guide Add missing common block to subroutine fix mpiuni tests with xl compilers Copy & paste the change on PetscSparseDensePlusDot Fix a wrong macro PetscInfo: Add missing errorchecking Log: various fixes and cleanups ...Conflicts: src/dm/impls/plex/plex.c
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