Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log appl
Log: various fixes and cleanups- Reorganize declarations in petsclog.h- Better -log_exclude, now applies to all registered stages- Minor fixes to implementation of -info_exclude- PCASM: Log apply-on-blocks KSP solves- Rename PetscLogDestroy() -> PetscLogFinalize() and hide it from the API
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Event logging synchronization- Remove PetscLogEventBarrierBegin/PetscLogEventBarrierEnd- Option -log_sync enables barrier synchronization for all events- A few non-collective events are disabled
Event logging synchronization- Remove PetscLogEventBarrierBegin/PetscLogEventBarrierEnd- Option -log_sync enables barrier synchronization for all events- A few non-collective events are disabled (eg. {Vec|Mat}SetValues)
Merge branch 'master' into knepley/feature-pc-patch* master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing
Merge branch 'master' into knepley/feature-pc-patch* master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ...Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c
Update hash table implementation* Upgrade khash.h to version 0.2.8* Add common API for hash table iterators* Add generic hash map and set APIs* Add hash map and set for integer and pair of integ
Update hash table implementation* Upgrade khash.h to version 0.2.8* Add common API for hash table iterators* Add generic hash map and set APIs* Add hash map and set for integer and pair of integers
Merge branch 'maint'
style fixes
ISBuildTwoSided: remove tabs and fix style
Fix documentation
missing CHKERRQ()Commit-type: bug-fixReported-by: clang static analyzer
examples: add compile target 'ex%: ex%.o' etc - and remove the corresponding dups
Merge branch 'knepley/fix-section-clone'* knepley/fix-section-clone: Plex ex3: Test does not work with single precision Section: Must also copy field symmetries when cloning Section: Allow NU
Merge branch 'knepley/fix-section-clone'* knepley/fix-section-clone: Plex ex3: Test does not work with single precision Section: Must also copy field symmetries when cloning Section: Allow NULL argument to PetscSectionSetSym() Plex ex3: Added tests for Q3 Plex: Added picture for 3D hex interpolation Section: Copy symmetries when cloning
Man pages: add newlines after "Notes:"This allows for proper formatting from sowing.On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \(
Man pages: add newlines after "Notes:"This allows for proper formatting from sowing.On OS X (using gsed, not the default BSD sed), from the PETSc root directory: find src include -type f \( -name "*.c" -or -name "*.h" -or -name "*.cxx" \) | xargs gsed -i 's/Notes\s*:\s*\(\w.*\)/Notes:\n \1/'This adds a newline and 4 spaces whenever "Notes:" is followed by any "word" character, in any .c, .h, or .cxx file in src/ or include/
Section: Must also copy field symmetries when cloning
Section: Allow NULL argument to PetscSectionSetSym()
Section: Copy symmetries when cloning
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'* origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm:
Merge remote-tracking branch 'origin/tisaac/feature-dmfield'* origin/tisaac/feature-dmfield: (56 commits) Plex: Updated test output for DMLabel change DMLabel: make empty ISs strides DMSwarm: silence static analyzer warning PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM DMField: default initialization of variable PetscFE: fix integration for openCL PetscFEGeomComplete(): correct normal vector in 2D. DMField: c++/complex fixes DMField: empty processor protections DMField regression test fixes DMLabel: try to keep stride IS as stride IS as much as possible DMPlexRefine(): create depth before hybrid-bounded label DMField: documentation of interface DMField: implement shell DMPlex: rename newly created label ...Conflicts: src/dm/dt/interface/dtfe.c src/snes/examples/tutorials/ex69.c src/snes/utils/dmplexsnes.c
Section: Small fix
Merge branch 'master' into knepley/feature-pc-patch* master: (440 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings fix grep us
Merge branch 'master' into knepley/feature-pc-patch* master: (440 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings fix grep usage on solaris [use egrep] opensolaris: fix errors Update timer reporting and minor reporting fix Remove redundant if statement. Found by @jedbrown Fixed problem with order of developer photos on website. superlu_dist: use correct flag in example [PETSC_HAVE_SUPERLU -> PETSC_HAVE_SUPERLU_DIST] Bib: PERMON ref fix for osx doc: more author fixes doc: more author fixes Italicized "orderings" in MPI process placement discussion. Added Richard to the user manual author list. Added Richard to the list of active developers on the website. add string check for MS-MPI and IMPI timeout errors opensolaris does not have multiple grep utils - but default one does not support -F. So use fgrep instead Standardizing timeout checks Report wall clock time of total tests Use time instead of date %s ...Conflicts: include/petscpc.h src/ksp/ksp/interface/itfunc.c
Merged in dalcinl/fix-info-log-exclude (pull request #914)Consistent handling of command line options -info_exclude and -log_excludeApproved-by: BarryFSmith <bsmith@mcs.anl.gov>
doc: fix LOCDIR in makefiles
Consistent handling of command line options -info_exclude and -log_exclude
Section: Allow global offsets for fields to be non-contiguous- This allows the global operator to segregate fields, rather than having all fields on a point contiguous as was our default
Merge branch 'stefano_zampini/fix-matis-dmda-l2g'
Merged in dalcinl/fix-sf (pull request #903)PetscSF: Various fixes and cleanupsApproved-by: BarryFSmith <bsmith@mcs.anl.gov>Approved-by: Jed Brown <jed@59a2.org>
PetscSFSetGraph: Check and optimize for contiguous storage
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