added bs argument to ISLocalToGlobalMappingCreate(), not yet used for bs > 1

PetscSection: Must initialize remoteOffsets

ISColoring: Fix ISColoringView

Bug introduced in 98c3331 making all PetscObjects call
PetscObjectPrintClassNamePrefixType() during their ASCII viewer.
However, ISColoring is not a PetscObject. ISCo

ISColoring: Fix ISColoringView

Bug introduced in 98c3331 making all PetscObjects call
PetscObjectPrintClassNamePrefixType() during their ASCII viewer.
However, ISColoring is not a PetscObject. ISColoringView now prints
a fascimile of "ClassNamePrefixType" output.

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Merge branch 'master' into knepley/feature-plex-hdf5-parallel-load

* master: (125 commits)
since PETSc cannot view factored matrices, generate an error rather than display the wrong stuff (this wa

Merge branch 'master' into knepley/feature-plex-hdf5-parallel-load

* master: (125 commits)
since PETSc cannot view factored matrices, generate an error rather than display the wrong stuff (this was really bad)
outdated example that doesn't match coding style removed and buggy
petscversion.h: workaround ifort -cpp lack of referential transparency
configure: ignore AR, MAKEFLAGS [if set in env]
incorrect first entry in array being zeroed in example
sizeof.c: remove dependence on petsc [and fix syntax error]
nightlybuilds: use consistant PETSC_ARCH, machine names
TS: Allow viewing of TS solutions
DMPlex: Fix comparison for complex
change MPIVersion streams to use MPI_Wtime() to be portable to Windows do not use scalar square root on real number; it upsets Microsoft
cannot use I in PETSc code because in complex it sometimes represents imaginary number cannot pass PetscScalar * to VecNorm()
in dashboard don't warn about SSL and BOI deprecated
TS ex11: Fixed output formatting
Doc+DMPlex: Added function documentation for some refinement functions
streams: translate code from 'bash' to 'sh' [fix freebsd]
barry is an idiot who doesn't have a clue as to what he is doing (and git's unfriendlyness doesn't help matters)
don't list examples under C that don't work with complex!
forgotten output file
removed valgrind warning about sending uninitialized data
nightly builds ignore unrecognized pragma and .c file as C++ code
...

Conflicts:
include/petsc-private/dmpleximpl.h

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PetscSection: Better check when creating global section

Merge branch 'barry/invert-is-identity'

Merge branch 'barry/add-names-for-all-ascii-viewers'

IS: Stupid mistake. Damn you compiler

IS: Added ISSortRemoveDups()

Merge branch 'jed/sf-events'

* jed/sf-events:
SF: shorten event names to fit within 16-char limit

Merge branch 'jed/sf-contig-op'

* jed/sf-contig-op:
SF: guard MPI_COMBINER_DUP
SF: add arithmetic op types for contiguous types

Fix spurious -Wmaybe-uninitialized warnings

IS+HDF5: Corrected code for new block size interface where it is never negative

completed updating of example output for changine in ASCII viewing of option names, types etc

Merge branch 'knepley/feature-plex-hdf5'

* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequ

Merge branch 'knepley/feature-plex-hdf5'

* knepley/feature-plex-hdf5: (63 commits)
DMPlex ex2: Added an example that checks a mesh
DMPlex: #ifdef support functions for HDF5
TS: Fix output sequence
DMPlex: Check for HDF5 attributes before writing them
DMPlex: Label with timestep number since we do not have times
Viewer+HDF5: Added PetscViewerHDF5HasAttribute()
TS: Set output sequence for timesteps
DMPlex: Handle output sequences - Added static to some functions
DM: Add idea of an output sequence - Added DMGet/SetOutputSequenceNumber() - Added doc for outputDM
REVERT TS: Timestep gets set into DMTS
DMPlex: Fix up HDF5 segregation
DMPlex: Replace MAXPATHLEN with PETSC_MAX_PATH_LEN
DMPlex: Fix HDF5 timestep handling
DMPlex: Set correct block size on HDF5 field vectors
TS: Timestep gets set into DMTS
DMTS: Added timestep
DMPlex: Fix output of fields - Corrected name - Fixed vector type
DMPlex: Return errors from HDF5 function
DMPlex+Viewer: Now output separate fields for viz - Added the PETSC_VIEWER_HDF5_VIZ format for creating viz fields - Added field type determination
Sys+HDF5: Added PetscDataType string and HDF5 support for it
...

Conflicts:
config/BuildSystem/config/packages/__init__.py
src/ts/interface/ts.c

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changes to examples due to objects always printing class and name information

SF: shorten event names to fit within 16-char limit

There is no convention for including the Petsc namespace in event names.

Insure that all ASCII viewers for PETSc objects call PetscObjectPrintClassNamePrefixType()

IS: Fix compiler warning

SF: guard MPI_COMBINER_DUP

Also trust MPI_VERSION to avoid confusing memory corruption if a user
forgets to reconfigure after getting this patch.

IS: Forgot to protect HDF5

IS: Forgot to protect HDF5

IS: Added ISLoad() and an HDF5 implementation
- I know this only works for general now

IS: Added HDF5 viewer to general

IS: Changed over to using PetscLayout
- Could reorganize code to be cleaner now