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1475a3bb31-Dec-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


/petsc/.gitignore
/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/PaStiX.py
/petsc/config/BuildSystem/config/packages/cxxlibs.py
/petsc/config/BuildSystem/config/packages/flibs.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/mathlib.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/ml.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/script.py
/petsc/config/PETSc/options/languages.py
/petsc/config/configure.py
/petsc/config/examples/arch-ci-linux-analyzer.py
/petsc/config/examples/arch-ci-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-pkgs-gcov.py
/petsc/config/gmakegentest.py
/petsc/config/report_tests.py
/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/include/petscdmnetwork.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/lib/petsc/conf/variables
/petsc/makefile
/petsc/src/dm/dt/fe/examples/makefile
/petsc/src/dm/dt/fe/examples/tests/ex1.c
/petsc/src/dm/dt/fe/examples/tests/makefile
/petsc/src/dm/dt/fe/examples/tests/output/ex1_0.out
/petsc/src/dm/dt/fe/examples/tests/output/ex1_1.out
/petsc/src/dm/dt/fe/examples/tests/output/ex1_2.out
/petsc/src/dm/dt/fe/examples/tests/output/ex1_3.out
/petsc/src/dm/dt/fe/makefile
/petsc/src/dm/examples/tests/ex9.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/examples/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex9.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_schur.out
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex301.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_1.out
/petsc/src/mat/examples/tests/output/ex301_aijcusparse_2.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_1.out
/petsc/src/mat/examples/tests/output/ex301_aijviennacl_2.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/seqviennacl/aijviennacl.cxx
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/nest/matnestimpl.h
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/f90-mod/petscsys.h90
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/utils/mpishm.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_4.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_4.out
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c
examples/tests/ex3.c
examples/tests/output/ex3_1.out
examples/tests/output/ex3_2.out
is/impls/block/block.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
f79f3a5c31-Dec-2019 Barry Smith <bsmith@mcs.anl.gov>

Block size of ISBlock cannot be causually changed; otherwise completely changes the meaning of the IS indices

$ ./ex3
0: 2 3 14 15 18 19
0: 3 4 5 21 22 23

Commit-type: error-checking, bug-fix


/petsc/.gitignore
/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/PETSc/options/arch.py
/petsc/config/configure.py
/petsc/config/example_template.py
/petsc/config/examples/arch-ci-freebsd-c-single-opt.py
/petsc/config/examples/arch-ci-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-ci-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-ci-freebsd-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-analyzer.py
/petsc/config/examples/arch-ci-linux-c-exodus-dbg.py
/petsc/config/examples/arch-ci-linux-clang-avx.py
/petsc/config/examples/arch-ci-linux-cmplx-gcov.py
/petsc/config/examples/arch-ci-linux-cmplx-single.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/config/examples/arch-ci-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-gcc-complex-opt.py
/petsc/config/examples/arch-ci-linux-gcc-cxx-avx2.py
/petsc/config/examples/arch-ci-linux-gcc-ifc-cmplx.py
/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-ci-linux-gcov.py
/petsc/config/examples/arch-ci-linux-knl.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py
/petsc/config/examples/arch-ci-linux-nagfor.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/config/examples/arch-ci-linux-opt-misc.py
/petsc/config/examples/arch-ci-linux-pardiso.py
/petsc/config/examples/arch-ci-linux-pgi.py
/petsc/config/examples/arch-ci-linux-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py
/petsc/config/examples/arch-ci-linux-pkgs-gcov.py
/petsc/config/examples/arch-ci-linux-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-pkgs-valgrind.py
/petsc/config/examples/arch-ci-linux-without-fc.py
/petsc/config/examples/arch-ci-linux-xsdk-dbg.py
/petsc/config/examples/arch-ci-mswin-intel-cxx-cmplx.py
/petsc/config/examples/arch-ci-mswin-intel.py
/petsc/config/examples/arch-ci-mswin-opt-impi.py
/petsc/config/examples/arch-ci-mswin-uni.py
/petsc/config/examples/arch-ci-opensolaris-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-opensolaris-misc.py
/petsc/config/examples/arch-ci-opensolaris-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-dbg.py
/petsc/config/examples/arch-ci-osx-xsdk-opt.py
/petsc/config/gmakegentest.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petsc/private/matimpl.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/lib/petsc/bin/maint/petsc-val.supp
/petsc/lib/petsc/bin/petscdiff
/petsc/makefile
/petsc/src/dm/examples/tests/ex9.c
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/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/stag/examples/tests/ex11.c
/petsc/src/dm/impls/stag/examples/tests/ex8.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/ksp/examples/tests/ex1.c
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex9.c
/petsc/src/ksp/ksp/examples/tests/makefile
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
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/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
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/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_0_ksp_convergence_test-default.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_0_ksp_convergence_test-skip.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_1_ksp_convergence_test-default.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_1_ksp_convergence_test-skip.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_schur.out
/petsc/src/ksp/ksp/examples/tutorials/ex7f.F90
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex68.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/nest/matnestimpl.h
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/matstash.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/network/water/waterreaddata.c
/petsc/src/sys/classes/draw/impls/x/xops.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/examples/tests/ex1f.F90
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/sys/f90-mod/petscviewer.h
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_4.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_4.out
/petsc/src/ts/interface/ts.c
examples/tests/ex3.c
examples/tests/output/ex3_1.out
examples/tests/output/ex3_2.out
is/impls/block/block.c
684a874a11-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSFBcastAndOp_Window: delay completion of outstanding Get operations to the End routine


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/src/docs/website/documentation/changes/dev.html
sf/impls/window/sfwindow.c
ab3c051910-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

PETSCSF: Added window tests


sf/examples/tests/ex1.c
sf/examples/tests/ex2.c
sf/examples/tests/ex4.c
sf/examples/tests/ex5.c
sf/examples/tests/output/ex1_window_nsize-1.out
sf/examples/tests/output/ex1_window_nsize-2.out
sf/examples/tests/output/ex1_window_nsize-3.out
sf/examples/tests/output/ex1_window_shared_nsize-1.out
sf/examples/tests/output/ex1_window_shared_nsize-2.out
sf/examples/tests/output/ex1_window_shared_nsize-3.out
sf/examples/tests/output/ex2_1_window.out
sf/examples/tests/output/ex4_2.out
sf/examples/tests/output/ex5_2.out
sf/examples/tutorials/ex1.c
sf/examples/tutorials/ex2.c
sf/examples/tutorials/ex3.c
sf/examples/tutorials/output/ex1_1.out
sf/examples/tutorials/output/ex1_10.out
sf/examples/tutorials/output/ex1_10_basic.out
sf/examples/tutorials/output/ex1_2.out
sf/examples/tutorials/output/ex1_3.out
sf/examples/tutorials/output/ex1_4.out
sf/examples/tutorials/output/ex1_5.out
sf/examples/tutorials/output/ex1_6.out
sf/examples/tutorials/output/ex1_7.out
sf/examples/tutorials/output/ex1_8.out
sf/examples/tutorials/output/ex2_basic.out
sf/examples/tutorials/output/ex3_window.out
sf/examples/tutorials/output/ex3_window_dupped.out
5b0d146a28-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PETSCSFWINDOW: Improve the class

- fix bugs with sync type LOCK and ACTIVE
- add support for creating windows with different flavors
- add reusage of already created windows
- add support for MPI_in

PETSCSFWINDOW: Improve the class

- fix bugs with sync type LOCK and ACTIVE
- add support for creating windows with different flavors
- add reusage of already created windows
- add support for MPI_info customization of MPI_Wins
- use MPI_Get_accumulate in FetchAndOp if present
- PetscSFComposeInverse: use MPIU_REPLACE for 64bit installations and PETSCSFWINDOW

show more ...


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/include/petscsf.h
/petsc/include/petscsys.h
sf/impls/window/sfwindow.c
sf/interface/sf.c
4cc19a0c08-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSFCreateEmbedded*: call PetscSFDuplicate instead of Create + SetFromOptions


sf/interface/sf.c
2a67d2da08-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSFSetGraph: call reset only if graph has been already set


sf/interface/sf.c
7061630401-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

minor


sf/interface/sf.c
44ee17ed28-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSFGetGroups: abort if ranks have not been setup

checking for setupcalled is a too strict requirement


sf/interface/sf.c
f6d956f628-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PETSCSFBASIC: only reset BASIC specific data when destroying the object


/petsc/.gitignore
/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/cxxlibs.py
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/petsc/src/dm/impls/plex/plexsection.c
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/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
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/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_2_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
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/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
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/petsc/src/ksp/ksp/examples/tests/output/ex11_test_fs-1_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex9_schur.out
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/nest/matnestimpl.h
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/f90-mod/petscsys.h90
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/init.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic2.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonic3.c
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic2_1_alt_4.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_2.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_3.out
/petsc/src/ts/examples/tutorials/phasefield/output/biharmonic3_1_alt_4.out
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busdmnetwork.c
sf/impls/basic/sfbasic.c
40c0361917-Dec-2019 Vaclav Hapla <vaclav.hapla@erdw.ethz.ch>

PetscSFBcastAndOpBegin_Allgatherv: fix gcc-8 'may be used uninitialized'


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/metis.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/examples/arch-ci-linux-c-exodus-dbg.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdmstag.h
/petsc/lib/petsc/bin/maint/petsc-val.supp
/petsc/lib/petsc/conf/rules
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/product/product.c
/petsc/src/dm/impls/stag/examples/tests/ex10.c
/petsc/src/dm/impls/stag/examples/tests/ex11.c
/petsc/src/dm/impls/stag/examples/tests/ex12.c
/petsc/src/dm/impls/stag/examples/tests/ex13.c
/petsc/src/dm/impls/stag/examples/tests/ex23.c
/petsc/src/dm/impls/stag/examples/tests/ex5.c
/petsc/src/dm/impls/stag/examples/tests/ex7.c
/petsc/src/dm/impls/stag/examples/tests/ex8.c
/petsc/src/dm/impls/stag/examples/tests/ex9.c
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/petsc/src/dm/impls/stag/examples/tutorials/ex2.c
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/petsc/src/dm/impls/stag/examples/tutorials/ex4.c
/petsc/src/dm/impls/stag/stag1d.c
/petsc/src/dm/impls/stag/stag2d.c
/petsc/src/dm/impls/stag/stag3d.c
/petsc/src/dm/impls/stag/stagda.c
/petsc/src/dm/impls/stag/stagstencil.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/ksp/examples/tests/ex1.c
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_0_ksp_convergence_test-default.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_0_ksp_convergence_test-skip.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_1_ksp_convergence_test-default.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_1_ksp_convergence_test-skip.out
/petsc/src/ksp/ksp/examples/tests/output/ex1_lsqr_2.out
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/utils/matstash.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/objects/ftn-custom/zstart.c
sf/impls/basic/allgatherv/sfallgatherv.c
efe49d7514-Dec-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'haplav/feature-dmload-events' into 'master'

Add some new events related to DMPlexCreateFromFile.

See merge request petsc/petsc!2391


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/configure.py
/petsc/config/example_template.py
/petsc/config/gmakegentest.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscdt.h
/petsc/include/petscsys.h
/petsc/lib/petsc/bin/petscdiff
/petsc/src/dm/dt/examples/tests/ex7.c
/petsc/src/dm/dt/examples/tests/makefile
/petsc/src/dm/dt/examples/tests/output/ex7_1234.out
/petsc/src/dm/dt/examples/tests/output/ex7_56.out
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtaltv.c
/petsc/src/dm/dt/interface/makefile
/petsc/src/dm/impls/moab/dmmbfem.cxx
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tests/output/ex9_correctness_0.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex9_correctness_2.out
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/website/documentation/linearsolvertable.html
/petsc/src/ksp/ksp/examples/tutorials/ex7f.F90
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/impls/x/xops.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/viewer/interface/viewers.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/err.c
/petsc/src/sys/examples/tests/ex1f.F90
/petsc/src/sys/examples/tests/ex3.c
/petsc/src/sys/f90-mod/petscviewer.h
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/interface/ts.c
is/interface/index.c
/petsc/src/vec/vec/interface/dlregisvec.c
58cd63d512-Dec-2019 Vaclav Hapla <vaclav.hapla@erdw.ethz.ch>

Add some new events related to DMPlexCreateFromFile.

* DMPlexCreateFromFile
* DMPlexCreateFromCellList
* DMLoad
* ISLoad


/petsc/config/configure.py
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscmat.h
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/output/ex18_2a.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/interface/dlregisdmdm.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/examples/tests/ex68.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/order/sorder.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj2.c
is/interface/index.c
/petsc/src/vec/vec/interface/dlregisvec.c
a9e32f4612-Dec-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/petscpartitioner-target-weights' into 'master'

Fix PetscPartitioner and add support for target partition weights

See merge request petsc/petsc!2333


/petsc/config/configure.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscmat.h
/petsc/include/petscoptions.h
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex24.c
/petsc/src/dm/impls/plex/examples/tests/ex31.c
/petsc/src/dm/impls/plex/examples/tests/ex33.c
/petsc/src/dm/impls/plex/examples/tests/output/ex12_lb_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex12_lb_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_2a.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_part_parmetis_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_part_ptscotch_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_part_ptscotch_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex24_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_parmetis_nsize-1_nparts-1.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex33_parmetis_nsize-1_nparts-3.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex33_ptscotch_nsize-3_nparts-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_ptscotch_nsize-3_nparts-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_ptscotch_nsize-3_nparts-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-1_nparts-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-1_nparts-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-1_nparts-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-2_nparts-1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-2_nparts-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-2_nparts-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-3_nparts-1.out
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/petsc/src/dm/impls/plex/examples/tests/output/ex33_simple_nsize-3_nparts-3.out
/petsc/src/dm/impls/plex/petscpartmatpart.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcheckinterface.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexindices.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/installation.html
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/color/interface/matcoloring.c
/petsc/src/mat/examples/tests/ex68.c
/petsc/src/mat/examples/tutorials/output/ex15_2.out
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/sorti.c
section/interface/section.c
sf/impls/basic/sfbasic.c
sf/impls/basic/sfpack.c
sf/interface/sf.c
3e03ebd804-Dec-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSectionSetClosureIndex: take reference on objects set


/petsc/src/dm/impls/plex/plexindices.c
section/interface/section.c
140a147227-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSFCreateEmbeddedSF: fix for bad merge


sf/interface/sf.c
fb61b9e427-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSortedIntRemoveDups: use PetscCheckSorted


/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscoptions.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/sorti.c
sf/impls/basic/sfbasic.c
sf/impls/basic/sfpack.c
203a878629-Nov-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/feature-sf-do-pack-on-gpu' into 'master'

Add support to do pack/unpack on GPU and do MPI on CPU

See merge request petsc/petsc!2205


/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/vecscatterimpl.h
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/mat/examples/tests/ex5.c
sf/impls/basic/allgather/sfallgather.c
sf/impls/basic/allgatherv/sfallgatherv.c
sf/impls/basic/allgatherv/sfallgatherv.h
sf/impls/basic/alltoall/sfalltoall.c
sf/impls/basic/cuda/sfpackcuda.cu
sf/impls/basic/gather/sfgather.c
sf/impls/basic/gatherv/sfgatherv.c
sf/impls/basic/gatherv/sfgatherv.h
sf/impls/basic/neighbor/sfneighbor.c
sf/impls/basic/sfbasic.c
sf/impls/basic/sfbasic.h
sf/impls/basic/sfpack.c
sf/impls/basic/sfpack.h
sf/interface/sf.c
/petsc/src/vec/vec/utils/vecmpitoseq.c
/petsc/src/vec/vscat/examples/ex8.c
/petsc/src/vec/vscat/examples/output/ex8_1.out
/petsc/src/vec/vscat/examples/output/ex8_2.out
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/vscreate.c
124bfe3426-Nov-2019 Stefano Zampini <stefano.zampini@gmail.com>

PetscSection: Must call reset before copying the data over


/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/partition/partition.c
section/interface/section.c
fa9d2cbc27-Nov-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/SuiteSparse.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/pflotran.py
/petsc/config/PETSc/options/arch.py
/petsc/config/PETSc/options/installDir.py
/petsc/config/configure.py
/petsc/config/examples/arch-ci-freebsd-c-single-opt.py
/petsc/config/examples/arch-ci-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-ci-freebsd-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-ci-freebsd-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-ILP64.py
/petsc/config/examples/arch-ci-linux-analyzer.py
/petsc/config/examples/arch-ci-linux-c-exodus-dbg.py
/petsc/config/examples/arch-ci-linux-clang-avx.py
/petsc/config/examples/arch-ci-linux-cmplx-gcov.py
/petsc/config/examples/arch-ci-linux-cmplx-single.py
/petsc/config/examples/arch-ci-linux-cuda-double.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/config/examples/arch-ci-linux-cxx-cmplx-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-gcc-complex-opt.py
/petsc/config/examples/arch-ci-linux-gcc-cxx-avx2.py
/petsc/config/examples/arch-ci-linux-gcc-ifc-cmplx.py
/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-ci-linux-gcov.py
/petsc/config/examples/arch-ci-linux-knl.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64-gcov.py
/petsc/config/examples/arch-ci-linux-nagfor.py
/petsc/config/examples/arch-ci-linux-opt-cxx-quad.py
/petsc/config/examples/arch-ci-linux-opt-misc.py
/petsc/config/examples/arch-ci-linux-pardiso.py
/petsc/config/examples/arch-ci-linux-pgi.py
/petsc/config/examples/arch-ci-linux-pkgs-64idx.py
/petsc/config/examples/arch-ci-linux-pkgs-cxx-mlib.py
/petsc/config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py
/petsc/config/examples/arch-ci-linux-pkgs-gcov.py
/petsc/config/examples/arch-ci-linux-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-pkgs-valgrind.py
/petsc/config/examples/arch-ci-linux-without-fc.py
/petsc/config/examples/arch-ci-linux-xsdk-dbg.py
/petsc/config/examples/arch-ci-mswin-intel-cxx-cmplx.py
/petsc/config/examples/arch-ci-mswin-intel.py
/petsc/config/examples/arch-ci-mswin-opt-impi.py
/petsc/config/examples/arch-ci-mswin-uni.py
/petsc/config/examples/arch-ci-opensolaris-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-opensolaris-misc.py
/petsc/config/examples/arch-ci-opensolaris-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-cxx-cmplx-pkgs-dbg.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py
/petsc/config/examples/arch-ci-osx-dbg.py
/petsc/config/examples/arch-ci-osx-xsdk-opt.py
/petsc/config/gmakegentest.py
/petsc/config/petsc_harness.sh
/petsc/config/query_tests.py
/petsc/config/report_tests.py
/petsc/gmakefile.test
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscdmnetwork.h
/petsc/include/petscdmplex.h
/petsc/include/petsclog.h
/petsc/include/petscmat.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/output/7_par_hdf5_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/7_par_hdf5_parmetis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist0_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist0_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-parallel.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_dist1_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_seq_interpolate-none.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_5_seq_interpolate-serial.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_hex.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_int_hex.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_int_quad.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_int_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_int_tri.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_parint_hex.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_parint_quad.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_parint_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_parint_tri.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_quad.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_6_tri.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_exo_simple_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_hdf5_hierarch_nsize-4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_int_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_par_hdf5_parmetis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_7_seq_hdf5_simple_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_int_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_parmetis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_par_hdf5_parmetis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_int_metis.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_int_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_metis_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_simple.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_simple_int.out
/petsc/src/dm/impls/plex/examples/tests/output/ex18_9_seq_hdf5_simple_int_err.out
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/stag/examples/tests/ex11.c
/petsc/src/dm/impls/stag/examples/tests/ex8.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/ksp/examples/tests/ex49.c
/petsc/src/ksp/ksp/examples/tests/output/ex49_cholmod.out
/petsc/src/ksp/ksp/examples/tutorials/ex5.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_ml_3.out
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex127.c
/petsc/src/mat/examples/tests/ex241f.F90
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/aijfact.c
/petsc/src/mat/impls/aij/seq/cholmod/aijcholmod.c
/petsc/src/mat/impls/aij/seq/umfpack/umfpack.c
/petsc/src/mat/impls/elemental/matelem.cxx
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/aijsbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/cholmodimpl.h
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sbaij/seq/relax.h
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij.h
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/sbaij/seq/sbaijfact.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/examples/tutorials/network/water/waterreaddata.c
/petsc/src/snes/examples/tutorials/output/ex19_suitesparse.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_hex.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_alt.out
/petsc/src/snes/examples/tutorials/output/ex62_fetidp_3d_tet_spetsc.out
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c
/petsc/src/ts/interface/ts.c
sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/examples/tutorials/makefile
/petsc/src/vec/vec/examples/tutorials/output/performance_cuda.out
/petsc/src/vec/vec/examples/tutorials/performance.c
06f2e05024-Nov-2019 Lisandro Dalcin <dalcinl@gmail.com>

PetscSF: Fix buffer displacements for 32bit integer builds

Use MPI_Aint to store displacements and prevent truncation.
This issue occurs for buffer sizes in bytes approaching the 2GB limit,
`bufsize

PetscSF: Fix buffer displacements for 32bit integer builds

Use MPI_Aint to store displacements and prevent truncation.
This issue occurs for buffer sizes in bytes approaching the 2GB limit,
`bufsize=n*unitbytes` with `n<=INT_MAX` but `n*unitbytes>INT_MAX`.

show more ...


/petsc/.gitlab-ci.yml
/petsc/.gitlab/CODEOWNERS
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/packages/pflotran.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/PETSc/options/arch.py
/petsc/config/PETSc/options/installDir.py
/petsc/config/configure.py
/petsc/config/gmakegentest.py
/petsc/config/petsc_harness.sh
/petsc/config/query_tests.py
/petsc/config/report_tests.py
/petsc/gmakefile.test
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/makefile
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/download/index.html
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/interface/matrix.c
sf/impls/basic/sfbasic.c
079da65221-Nov-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


/petsc/.gitlab/CODEOWNERS
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/PTScotch.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/include/petsccublas.h
/petsc/include/petscerror.h
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev_hpddm_baij.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-10_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_mkl_pardiso_pc_bddc_schur_layers-1_pc_bddc_adaptive_userdefined-1.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/error/err.c
/petsc/src/sys/objects/cuda/handle.c
/petsc/src/sys/objects/cuda/makefile
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/makefile
sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
a89cec6920-Nov-2019 Junchao Zhang <jczhang@mcs.anl.gov>

Fix a bug: selfbuflen is in <unit>


/petsc/.gitlab/CODEOWNERS
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/examples/arch-ci-linux-cuda-single.py
/petsc/include/petsccublas.h
/petsc/include/petscerror.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/mat/impls/dense/seq/cuda/densecuda.cu
/petsc/src/sys/objects/cuda/handle.c
/petsc/src/sys/objects/cuda/makefile
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/makefile
sf/impls/basic/sfbasic.c
/petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
1b5f50e611-Nov-2019 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jose/fix-fortran-interface' into 'master'

Fix Fortran interface that messed up with CAPS vs !UNDERSCORE

See merge request petsc/petsc!2283


/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/space/interface/space.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitcreatef.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/partition.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/trajectory/interface/traj.c
ao/interface/ao.c
is/interface/index.c
section/interface/section.c
sf/interface/sf.c
utils/isltog.c
/petsc/src/vec/pf/interface/pf.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vscat/interface/vscatfce.c
dd5e518f11-Nov-2019 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/maint'


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Chaco.py
/petsc/config/BuildSystem/config/packages/GLVis.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/fblaslapack.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/BuildSystem/script.py
/petsc/config/PETSc/Configure.py
/petsc/config/configure.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py
/petsc/gmakefile.test
/petsc/include/petscsnes.h
/petsc/lib/petsc/conf/variables
/petsc/src/dm/examples/tests/ex24.c
/petsc/src/dm/examples/tests/ex25.c
/petsc/src/dm/impls/da/dadist.c
/petsc/src/dm/impls/da/daindex.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/developers/index.html
/petsc/src/docs/website/documentation/changes/312.html
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/mat/examples/tests/ex209f.F90
/petsc/src/mat/examples/tests/ex240.c
/petsc/src/mat/examples/tests/ex241f.F90
/petsc/src/mat/examples/tests/output/ex241f_1.out
/petsc/src/mat/examples/tutorials/ex17f.F90
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/snes/examples/tutorials/output/ex19_tut_3_alt_2.out
sf/examples/tutorials/ex1f.F90
sf/interface/sf.c
/petsc/src/vec/vec/examples/tests/makefile
/petsc/src/vec/vec/examples/tutorials/ex6f.F90

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