History log of /petsc/src/vec/ (Results 1301 – 1325 of 6950)
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aa406ff924-Nov-2020 Junchao Zhang <jczhang@mcs.anl.gov>

Remove vecnode


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/blis.py
/petsc/config/petsc_harness.sh
/petsc/config/query_tests.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petsctao.h
/petsc/include/petsc/finclude/petscvec.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/petscscalapack.h
/petsc/include/petscdm.h
/petsc/include/petsclandau.h
/petsc/include/petscvec.h
/petsc/lib/petsc/conf/test.common
/petsc/src/binding/petsc4py/src/PETSc/Vec.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscvec.pxi
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/tutorials/ex5.c
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_petsc_parmetis.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_petsc_ptscotch.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_petsc_simple.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_xdmf_parmetis.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_xdmf_ptscotch.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_xdmf_simple.out
/petsc/src/dm/interface/dm.c
/petsc/src/docs/sphinx_docs/developers/images/test-artifacts.png
/petsc/src/docs/sphinx_docs/developers/testing.rst
/petsc/src/docs/sphinx_docs/index.rst
/petsc/src/docs/sphinx_docs/manual/index.rst
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/tests/output/ex48_1.out
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/ksp/tutorials/output/ex1_1.out
/petsc/src/ksp/ksp/tutorials/output/ex1_1_aijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex1f_1.out
/petsc/src/ksp/ksp/tutorials/output/ex1f_1_alt.out
/petsc/src/ksp/ksp/tutorials/output/ex1f_1_alt_2.out
/petsc/src/ksp/ksp/tutorials/output/ex23_1.out
/petsc/src/ksp/ksp/tutorials/output/ex23_2.out
/petsc/src/ksp/ksp/tutorials/output/ex23_3.out
/petsc/src/ksp/ksp/tutorials/output/ex29_3.out
/petsc/src/ksp/ksp/tutorials/output/ex2_bjacobi_2.out
/petsc/src/ksp/ksp/tutorials/output/ex56_1.out
/petsc/src/ksp/ksp/tutorials/output/ex56_latebs-2.out
/petsc/src/ksp/ksp/tutorials/output/ex56_latebs.out
/petsc/src/ksp/ksp/tutorials/output/ex67_nonsymmetric_left.out
/petsc/src/ksp/ksp/tutorials/output/ex67_nonsymmetric_right.out
/petsc/src/ksp/ksp/tutorials/output/ex7_2.out
/petsc/src/ksp/ksp/tutorials/output/ex7f_2.out
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/tests/ex242.c
/petsc/src/snes/tests/output/ex7_3.out
/petsc/src/snes/tests/output/ex7_3_alt.out
/petsc/src/snes/tests/output/ex7_4.out
/petsc/src/snes/tests/output/ex7_4_alt.out
/petsc/src/snes/tutorials/ex24.c
/petsc/src/snes/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel.out
/petsc/src/snes/tutorials/output/ex12_p4est_full_q2_nonconformal_serial.out
/petsc/src/snes/tutorials/output/ex24_2d_bdm1_p0.out
/petsc/src/snes/tutorials/output/ex24_2d_bdm1_p0_conv.out
/petsc/src/snes/tutorials/output/ex24_2d_q2_p0.out
/petsc/src/snes/tutorials/output/ex24_2d_q2_p0_conv.out
/petsc/src/snes/tutorials/output/ex24_2d_q2_p0_neumann_conv.out
/petsc/src/snes/tutorials/output/ex2_1.out
/petsc/src/snes/tutorials/output/ex2_3.out
/petsc/src/sys/classes/viewer/interface/viewa.c
/petsc/src/tao/constrained/impls/ipm/pdipm.c
/petsc/src/ts/utils/dmplexlandau/cuda/landaucu.cu
/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
/petsc/src/ts/utils/dmplexlandau/land_tensors.h
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c
is/sf/tests/ex13.c
is/sf/tests/output/ex13_1.out
vec/impls/makefile
vec/interface/rvector.c
vec/interface/vecregall.c
54f467a823-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jose/release/pgi-20.9-warnings' into 'release'

Fix warnings in NVIDIA compilers (formerly PGI)

See merge request petsc/petsc!3397


/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/petsc_harness.sh
/petsc/config/query_tests.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petsctao.h
/petsc/include/petsc/private/petscscalapack.h
/petsc/include/petscerror.h
/petsc/include/petscsys.h
/petsc/lib/petsc/conf/test.common
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/grglvis.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexmed.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/stag/stagda.c
/petsc/src/dm/impls/swarm/data_bucket.c
/petsc/src/dm/impls/swarm/data_ex.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarmpic_da.c
/petsc/src/dm/impls/swarm/swarmpic_plex.c
/petsc/src/dm/impls/swarm/swarmpic_view.c
/petsc/src/dm/interface/dmget.c
/petsc/src/docs/sphinx_docs/developers/images/test-artifacts.png
/petsc/src/docs/sphinx_docs/developers/testing.rst
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/tutorials/ex77.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/telescope/telescope_dmda.c
/petsc/src/ksp/pc/impls/tfs/ivec.c
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/crl/crl.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/matptap.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/seq/sbaijfact2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/order/wbm.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/tests/ex242.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/utils/image.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/glvis/glvis.c
/petsc/src/sys/error/adebug.c
/petsc/src/sys/error/err.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/sys/utils/mpits.c
/petsc/src/tao/bound/impls/bncg/bncg.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
is/sf/impls/basic/sfpack.c
is/sf/impls/window/sfwindow.c
is/sf/interface/sf.c
vec/impls/node/vecnode.c
vscat/impls/mpi1/vpscat_mpi1.c
vscat/impls/seq/seqvscat.c
4d2eff1819-Nov-2020 Satish Balay <balay@mcs.anl.gov>

doc: fix typo

Reported-by: Massimiliano Leoni <leoni.massimiliano1@gmail.com>

3685966c12-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release' into master

ec4bef2105-Nov-2020 Jose E. Roman <jroman@dsic.upv.es>

Fix warnings in NVIDIA compilers (formerly PGI): variable was never used

b458e8f105-Nov-2020 Jose E. Roman <jroman@dsic.upv.es>

Fix warnings in NVIDIA compilers (formerly PGI): unreachable statement


/petsc/lib/petsc/conf/variables
/petsc/makefile
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dagetelem.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/grglvis.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcgns.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexmed.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/stag/stagda.c
/petsc/src/dm/impls/swarm/data_bucket.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/impls/swarm/swarmpic_da.c
/petsc/src/dm/impls/swarm/swarmpic_plex.c
/petsc/src/dm/impls/swarm/swarmpic_view.c
/petsc/src/dm/interface/dmget.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/telescope/telescope_dmda.c
/petsc/src/ksp/pc/impls/tfs/ivec.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/crl/crl.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/aij/seq/matptap.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/seq/sbaijfact2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/sorder.c
/petsc/src/mat/order/wbm.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/sys/classes/draw/utils/image.c
/petsc/src/sys/classes/viewer/impls/glvis/glvis.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/mpiuni/mpi.c
/petsc/src/sys/utils/mpitr.c
/petsc/src/sys/utils/mpits.c
/petsc/src/tao/bound/impls/bncg/bncg.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
is/sf/impls/basic/sfpack.c
is/sf/impls/window/sfwindow.c
is/sf/interface/sf.c
vec/impls/node/vecnode.c
vscat/impls/seq/seqvscat.c
036c562211-Nov-2020 Barry Smith <bsmith@mcs.anl.gov>

VecMDot_SeqCUDA combine all the memory copies from GPU to CPU into a single copy

The time for VecMDot_SeqCUDA in snes/tutorials/ex19 -da_refine 7 -dm_mat_type aijcusparse -dm_vec_type cuda -pc_type

VecMDot_SeqCUDA combine all the memory copies from GPU to CPU into a single copy

The time for VecMDot_SeqCUDA in snes/tutorials/ex19 -da_refine 7 -dm_mat_type aijcusparse -dm_vec_type cuda -pc_type none -log_view dropped by 9%
on the UTK xSDK machine

The GPU timings for VecMDot_SeqCUDA are now just for the GPU computation and no longer include the copy to the CPU or CPU computations

Log scalar copies between CPU and GPU for CUDA vector operations

Remove a couple unneeded WaitForGPU()

/spend 2h

show more ...

4501044811-Nov-2020 Barry Smith <bsmith@mcs.anl.gov>

Fix timings for VecMAXPY_SeqCUDA and VecMDot_SeqCUDA.

The time for VecMAXPY_SeqCUDA for snes/tutorials/ex19 -da_refine 7 -dm_mat_type aijcusparse -dm_vec_type cuda -pc_type none -log_view
improved b

Fix timings for VecMAXPY_SeqCUDA and VecMDot_SeqCUDA.

The time for VecMAXPY_SeqCUDA for snes/tutorials/ex19 -da_refine 7 -dm_mat_type aijcusparse -dm_vec_type cuda -pc_type none -log_view
improved by 16 percent on the UTK xSDK machine from removing all the individual WaitForGPU() and timer calls.

Fix flops for VecMAXPY_SeqCUDA, previously it double counted all flops because it call VecAXPY_SeqCUDA() which also counted flops.

Log the GPU to CPU copies in VecMDot_SeqCUDA

Note the GPU timings for VecMDot_SeqCUDA now include the copy to CPU and CPU computations, because otherwise one would need to wait
for each kernel to complete on the CPU to get the timings. Previously the time recorded was only the kernel launch time leading to huge wrong flop rates.

/spend 1.3h

show more ...

61bf59e309-Nov-2020 Junchao Zhang <jczhang@mcs.anl.gov>

Fix PetscErrorCode typos in Fortran stubs

252985ae03-Nov-2020 Junchao Zhang <jczhang@mcs.anl.gov>

Add zvscat.c to makefile

9babe2dd06-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/add-WaitForKokkos' into 'master'

Add WaitForKokkos to AIJKOKKOS

See merge request petsc/petsc!3378


/petsc/include/petscveckokkos.hpp
/petsc/src/dm/impls/plex/tests/ex55.c
/petsc/src/dm/impls/plex/tests/output/ex55_0.out
/petsc/src/dm/impls/plex/tests/output/ex55_1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-1_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-1_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-1_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-1_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-2_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-2_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-2_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-2_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-4_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-4_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-4_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-4_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-8_format-default_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-8_format-default_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-8_format-hdf5_petsc_interpolate-0.out
/petsc/src/dm/impls/plex/tests/output/ex55_2_nsize-8_format-hdf5_petsc_interpolate-1.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-1_format-hdf5_viz.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-1_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-2_format-hdf5_viz.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-2_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-4_format-hdf5_viz.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-4_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-8_format-hdf5_viz.out
/petsc/src/dm/impls/plex/tests/output/ex55_2a_nsize-8_format-hdf5_xdmf.out
/petsc/src/dm/impls/plex/tests/output/ex55_3.out
/petsc/src/dm/impls/plex/tests/output/ex55_4.out
/petsc/src/dm/impls/plex/tests/output/ex55_9_hdf5.out
/petsc/src/dm/impls/plex/tests/output/ex55_9_hdf5_repart.out
/petsc/src/dm/impls/plex/tests/output/ex55_9_hdf5_repart_ppu.out
/petsc/src/dm/impls/plex/tests/output/ex55_9_hdf5_seqload.out
/petsc/src/dm/impls/plex/tests/output/ex55_9_hdf5_seqload_metis.out
/petsc/src/dm/impls/plex/tests/output/ex55_new_dm_view.out
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
vec/impls/seq/kokkos/veckokkosimpl.hpp
017c806d05-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/feature-mataij-create-fromcoo' into 'master'

Fast GPU assembly from COO data

See merge request petsc/petsc!3362


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/kokkos-kernels.py
/petsc/config/BuildSystem/config/packages/kokkos.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/include/petscversion.h
/petsc/lib/petsc/conf/variables
/petsc/makefile
/petsc/src/dm/tests/ex27.c
/petsc/src/dm/tests/ex28.c
/petsc/src/docs/sphinx_docs/index.rst
/petsc/src/docs/sphinx_docs/manual/index.rst
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/download/index.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/tests/ex6.c
/petsc/src/ksp/ksp/tests/ex60.c
/petsc/src/ksp/ksp/tests/output/ex60_0_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_0_kokkos.out
/petsc/src/ksp/ksp/tests/output/ex60_1_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_1_kokkos.out
/petsc/src/ksp/ksp/tests/output/ex60_2_cuda.out
/petsc/src/ksp/ksp/tests/output/ex60_2_kokkos.out
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/mat/tests/ex121.c
/petsc/src/mat/tests/ex124.c
/petsc/src/mat/tests/ex146.c
/petsc/src/mat/tests/ex147.c
/petsc/src/mat/tests/ex149.c
/petsc/src/mat/tests/ex150.c
/petsc/src/mat/tests/ex153.c
/petsc/src/mat/tests/ex155.c
/petsc/src/mat/tests/ex157.c
/petsc/src/snes/tutorials/ex73f90t.F90
/petsc/src/sys/error/errabort.c
/petsc/src/sys/objects/kokkos/kinit.kokkos.cxx
is/sf/impls/basic/cuda/sfcuda.cu
is/sf/impls/basic/kokkos/sfkok.kokkos.cxx
is/sf/impls/basic/sfpack.h
vec/impls/mpi/commonmpvec.c
vec/impls/seq/kokkos/veckok.kokkos.cxx
vec/tests/ex4.c
00b38f4f05-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release' into master

a00c7f4305-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/fix-sfcuda-int64-atomics' into 'release'

Fix device atomics with 64-bit indices and prefer long long over int64_t

See merge request petsc/petsc!3388

f9e47d4003-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'release' into master

fe3444ab03-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/fix-kokkos' into 'release'

Some minor fixes to KOKKOS

See merge request petsc/petsc!3373

874d28e303-Nov-2020 Junchao Zhang <jczhang@mcs.anl.gov>

Fix device atomics with 64-bit indices and prefer long long over int64_t

CUDA uses long long int, which is a different type than int64_t in function overloading

Reported-by: Stefano Zampini <stefan

Fix device atomics with 64-bit indices and prefer long long over int64_t

CUDA uses long long int, which is a different type than int64_t in function overloading

Reported-by: Stefano Zampini <stefano.zampini@gmail.com>

show more ...

033aa4b127-Oct-2020 Stefano Zampini <stefano.zampini@gmail.com>

KOKKOS/CUDA: add some more tests

Vec ex4: kokkos test

KSP test ex60: added PCASM CUDA and KOKKOS tests

5407e87022-Oct-2020 Stefano Zampini <stefano.zampini@gmail.com>

VEQSEQCUDA: fix VecGet/RestoreLocalVector

80b62af802-Nov-2020 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release' into master


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/src/dm/impls/plex/plexegads.c
/petsc/src/dm/impls/plex/tests/output/ex37_nozzle_0.out
/petsc/src/dm/impls/plex/tests/output/ex37_sphere_0.out
/petsc/src/ksp/ksp/tests/ex6.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/ex73f90t.F90
/petsc/src/ts/tutorials/ex45.c
/petsc/src/ts/tutorials/output/ex45_2d_p1.out
/petsc/src/ts/tutorials/output/ex45_2d_p1_sconv.out
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/petsc/src/ts/tutorials/output/ex45_2d_p2.out
/petsc/src/ts/tutorials/output/ex45_2d_p2_sconv.out
/petsc/src/ts/tutorials/output/ex45_2d_p2_tconv.out
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/petsc/src/ts/tutorials/output/ex45_3d_p1_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p1_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p2.out
/petsc/src/ts/tutorials/output/ex45_3d_p2_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p2_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q1.out
/petsc/src/ts/tutorials/output/ex45_3d_q1_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q1_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q2.out
/petsc/src/ts/tutorials/output/ex45_3d_q2_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q2_tconv.out
/petsc/src/ts/tutorials/output/ex45_egads_sphere.out
vec/impls/mpi/commonmpvec.c
f2012a6602-Nov-2020 Barry Smith <bsmith@mcs.anl.gov>

Fix word usage

Commit-type: docs-only
/spend 1m
Reported-by: Massimiliano Leoni <leoni.massimiliano1@gmail.com>


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/config/examples/arch-ci-linux-hip-double.py
/petsc/include/petscsys.h
/petsc/src/binding/petsc4py/src/PETSc/KSP.pyx
/petsc/src/binding/petsc4py/src/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/PETSc/PC.pyx
/petsc/src/binding/petsc4py/src/PETSc/SF.pyx
/petsc/src/binding/petsc4py/src/PETSc/TAO.pyx
/petsc/src/binding/petsc4py/src/PETSc/TS.pyx
/petsc/src/binding/petsc4py/src/PETSc/Vec.pyx
/petsc/src/binding/petsc4py/src/PETSc/Viewer.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscksp.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscmat.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscpc.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscsf.pxi
/petsc/src/binding/petsc4py/src/PETSc/petsctao.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscts.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscvec.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscvwr.pxi
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/tests/ex11.c
/petsc/src/dm/dt/tests/makefile
/petsc/src/dm/dt/tests/output/ex11_1.out
/petsc/src/dm/interface/dm.c
/petsc/src/docs/sphinx_docs/guides/guide_to_examples_by_physics.rst
/petsc/src/docs/sphinx_docs/manual/mat.rst
/petsc/src/docs/website/documentation/installation.html
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/inode2.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
vec/impls/mpi/commonmpvec.c
72fa472618-Oct-2020 Stefano Zampini <stefano.zampini@gmail.com>

Minor


/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/Triangle.py
/petsc/config/BuildSystem/config/packages/ctetgen.py
/petsc/src/dm/impls/plex/plexegads.c
/petsc/src/dm/impls/plex/tests/output/ex37_nozzle_0.out
/petsc/src/dm/impls/plex/tests/output/ex37_sphere_0.out
/petsc/src/ksp/ksp/impls/bcgs/bcgs.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/preallocator/matpreallocator.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/tutorials/ex13.c
/petsc/src/sys/utils/str.c
/petsc/src/ts/tutorials/ex45.c
/petsc/src/ts/tutorials/output/ex45_2d_p1.out
/petsc/src/ts/tutorials/output/ex45_2d_p1_sconv.out
/petsc/src/ts/tutorials/output/ex45_2d_p1_tconv.out
/petsc/src/ts/tutorials/output/ex45_2d_p2.out
/petsc/src/ts/tutorials/output/ex45_2d_p2_sconv.out
/petsc/src/ts/tutorials/output/ex45_2d_p2_tconv.out
/petsc/src/ts/tutorials/output/ex45_2d_q1.out
/petsc/src/ts/tutorials/output/ex45_2d_q1_sconv.out
/petsc/src/ts/tutorials/output/ex45_2d_q1_tconv.out
/petsc/src/ts/tutorials/output/ex45_2d_q2.out
/petsc/src/ts/tutorials/output/ex45_2d_q2_sconv.out
/petsc/src/ts/tutorials/output/ex45_2d_q2_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p1.out
/petsc/src/ts/tutorials/output/ex45_3d_p1_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p1_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p2.out
/petsc/src/ts/tutorials/output/ex45_3d_p2_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_p2_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q1.out
/petsc/src/ts/tutorials/output/ex45_3d_q1_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q1_tconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q2.out
/petsc/src/ts/tutorials/output/ex45_3d_q2_sconv.out
/petsc/src/ts/tutorials/output/ex45_3d_q2_tconv.out
/petsc/src/ts/tutorials/output/ex45_egads_sphere.out
is/sf/impls/basic/cuda/sfcuda.cu
0d8a268c29-Oct-2020 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/clean-up-vecscatter' into 'master'

typedef PetscSF VecScatter

See merge request petsc/petsc!3365


/petsc/config/BuildSystem/config/packages/ADOLC.py
/petsc/config/BuildSystem/config/packages/MUMPS.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/include/petsc/private/cudavecimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscvec.h
/petsc/src/binding/petsc4py/src/PETSc/PETSc.pyx
/petsc/src/binding/petsc4py/src/PETSc/Scatter.pyx
/petsc/src/binding/petsc4py/src/PETSc/Vec.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscdef.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscsct.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscvec.pxi
/petsc/src/binding/petsc4py/src/include/compat.h
/petsc/src/binding/petsc4py/src/include/compat/cuda.h
/petsc/src/binding/petsc4py/src/include/compat/viennacl.h
/petsc/src/binding/petsc4py/src/include/initpkg.h
/petsc/src/binding/petsc4py/test/test_object.py
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/partitioner/impls/simple/partsimple.c
/petsc/src/docs/tex/petscapp.bib
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/documentation/faq.html
/petsc/src/ksp/ksp/impls/preonly/preonly.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpicusparse/mpiaijcusparse.cu
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/scatter/mscatter.c
/petsc/src/mat/tests/ex134.c
/petsc/src/mat/tests/ex135.c
/petsc/src/mat/tests/output/ex182_11.out
/petsc/src/snes/tests/ex13.c
/petsc/src/snes/tests/output/ex13_bench.out
/petsc/src/snes/tests/output/ex13_cuda.out
/petsc/src/snes/tests/output/ex13_kokkos.out
/petsc/src/snes/tutorials/ex19.c
/petsc/src/snes/tutorials/output/ex19_fs.out
/petsc/src/sys/objects/cupminit.inc
/petsc/src/sys/objects/kokkos/kinit.kokkos.cxx
/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
is/sf/interface/makefile
is/sf/interface/sf.c
is/sf/interface/vscat.c
is/sf/tests/ex11.c
is/sf/tests/ex12.c
is/sf/tests/ex13.c
is/sf/tests/ex14.c
is/sf/tests/ex15.c
is/sf/tests/ex6.c
is/sf/tests/ex7.c
is/sf/tests/ex8.c
is/sf/tests/ex9.c
is/sf/tests/output/ex11_1.out
is/sf/tests/output/ex12_1.out
is/sf/tests/output/ex13_1.out
is/sf/tests/output/ex14_1.out
is/sf/tests/output/ex14_1_alt.out
is/sf/tests/output/ex15_1.out
is/sf/tests/output/ex6_1.out
is/sf/tests/output/ex7_1.out
is/sf/tests/output/ex8_1.out
is/sf/tests/output/ex8_2.out
is/sf/tests/output/ex9_1.out
is/sf/tests/output/ex9_2.out
is/sf/tests/output/ex9_3.out
makefile
vec/impls/seq/seqcuda/makefile
vec/impls/seq/seqcuda/veccuda.c
vec/impls/seq/seqcuda/veccuda2.cu
vec/interface/dlregisvec.c
vec/utils/makefile
bb2d6e6028-Oct-2020 Junchao Zhang <jczhang@mcs.anl.gov>

Add WaitForKokkos to AIJKOKKOS

00b0374927-Oct-2020 Stefano Zampini <stefano.zampini@gmail.com>

VecAXPY_SeqKokkos: both vectors must be of type KOKKOS


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/kokkos-kernels.py
/petsc/config/BuildSystem/config/packages/kokkos.py
/petsc/config/BuildSystem/config/packages/med.py
/petsc/config/examples/arch-ci-linux-hip-double.py
/petsc/include/petscsys.h
/petsc/src/binding/petsc4py/src/PETSc/KSP.pyx
/petsc/src/binding/petsc4py/src/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/PETSc/PC.pyx
/petsc/src/binding/petsc4py/src/PETSc/SF.pyx
/petsc/src/binding/petsc4py/src/PETSc/TAO.pyx
/petsc/src/binding/petsc4py/src/PETSc/TS.pyx
/petsc/src/binding/petsc4py/src/PETSc/Vec.pyx
/petsc/src/binding/petsc4py/src/PETSc/Viewer.pyx
/petsc/src/binding/petsc4py/src/PETSc/petscksp.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscmat.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscpc.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscsf.pxi
/petsc/src/binding/petsc4py/src/PETSc/petsctao.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscts.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscvec.pxi
/petsc/src/binding/petsc4py/src/PETSc/petscvwr.pxi
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/tests/ex11.c
/petsc/src/dm/dt/tests/makefile
/petsc/src/dm/dt/tests/output/ex11_1.out
/petsc/src/dm/interface/dm.c
/petsc/src/docs/sphinx_docs/guides/guide_to_examples_by_physics.rst
/petsc/src/docs/sphinx_docs/manual/mat.rst
/petsc/src/docs/website/documentation/installation.html
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/inode2.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx
vec/impls/seq/kokkos/veckok.kokkos.cxx

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