History log of /petsc/src/vec/ (Results 2126 – 2150 of 6950)
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3889ca8427-Aug-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/balay/cleanup-vecscatters'


/petsc/src/snes/examples/tutorials/ex12.c
vec/utils/vecmpitoseq.c
vscat/impls/vpscat.c
vscat/impls/vpscat_mpi1.c
vscat/impls/vscat.c
vscat/interface/ftn-custom/makefile
vscat/interface/ftn-custom/zvscatfcef.c
vscat/interface/makefile
vscat/interface/vscatfce.c
vscat/interface/vscreate.c
11c1b2e426-Aug-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'knepley/feature-plex-functionals' [PR #1074]

* knepley/feature-plex-functionals:
Plex: Added support for integrating on boundaries
This is just a utility routine for integrating on bou

Merge branch 'knepley/feature-plex-functionals' [PR #1074]

* knepley/feature-plex-functionals:
Plex: Added support for integrating on boundaries
This is just a utility routine for integrating on boundaries. It is intended for use in optimization loops.

show more ...


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/p4est.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
/petsc/lib/petsc/conf/test
/petsc/lib/petsc/conf/test.common
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/impls/plex/examples/tests/ex23.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/output/ex23_1.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex17.c
/petsc/src/snes/examples/tutorials/output/ex12_bd_int_0.out
/petsc/src/snes/examples/tutorials/output/ex12_bd_int_1.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p1_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p1_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p1_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p1_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p2_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p2_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p2_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p2_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p3_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p3_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p3_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_p3_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q1_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q1_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q1_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q1_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q2_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q2_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q2_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q2_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q3_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q3_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q3_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_2d_q3_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p1_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p1_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p1_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p1_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p2_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p2_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p2_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p2_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p3_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p3_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p3_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_p3_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q1_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q1_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q1_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q1_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q2_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q2_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q2_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q2_trig_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q3_quad_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q3_quad_vlap.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q3_trig_elas.out
/petsc/src/snes/examples/tutorials/output/ex17_3d_q3_trig_vlap.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/ts/utils/dmplexts.c
is/is/utils/isdiff.c
684a628d25-Aug-2018 Satish Balay <balay@mcs.anl.gov>

cuda: protect cuda includes


vscat/impls/vscat.c
vscat/interface/vscatfce.c
aaec799c25-Aug-2018 Satish Balay <balay@mcs.anl.gov>

fix cuda warnings.

/sandbox/petsc/petsc.next/src/vec/vscat/interface/vscatfce.c:186:10: warning: implicit declaration of function ‘VecScatterCUDAIndicesDestroy’ [-Wimplicit-function-declaration]

fix cuda warnings.

/sandbox/petsc/petsc.next/src/vec/vscat/interface/vscatfce.c:186:10: warning: implicit declaration of function ‘VecScatterCUDAIndicesDestroy’ [-Wimplicit-function-declaration]
/sandbox/petsc/petsc.next/src/vec/vscat/interface/vscatfce.c:471:14: warning: implicit declaration of function ‘VecScatterCUDAIndicesCreate_PtoP’ [-Wimplicit-function-declaration]

show more ...


vscat/interface/vscatfce.c
2b96cffd24-Aug-2018 Satish Balay <balay@mcs.anl.gov>

petscvec: move PetscSFCreateFromZero from vscat to vec sources


vec/utils/vecmpitoseq.c
vscat/impls/vpscat_mpi1.c
65f8aed524-Aug-2018 Matthew G. Knepley <knepley@gmail.com>

PetscSection: PetscSectionGetField() should not increase the reference count


/petsc/config/PETSc/Configure.py
/petsc/config/install.py
/petsc/include/petsclog.h
/petsc/lib/petsc/bin/petsc_tas_analysis.py
/petsc/lib/petsc/bin/petsc_tas_style.mplstyle
/petsc/lib/petsc/conf/rules
/petsc/src/dm/field/impls/ds/dmfieldds.c
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/snes/utils/convest.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/logging/utils/eventlog.c
is/utils/vsectionis.c
f03dd01121-Jul-2018 Satish Balay <balay@mcs.anl.gov>

vscat: move ftn-custom to correct location
remove custom vecscatterdestroy_()


vscat/interface/ftn-custom/makefile
vscat/interface/ftn-custom/zvscatfcef.c
vscat/interface/vscatfce.c
1c1025f623-Aug-2018 Satish Balay <balay@mcs.anl.gov>

vscat: move interface routines to correct location


vscat/impls/vscat.c
vscat/interface/makefile
vscat/interface/vscatfce.c
803b2fe421-Jul-2018 Satish Balay <balay@mcs.anl.gov>

vscat: delete dead code


vscat/impls/vpscat.c
vscat/impls/vscat.c
vscat/interface/vscreate.c
3b586aaf22-Aug-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/barry/fix-vecgetarrayscatter'


/petsc/config/BuildSystem/config/packages/libceed.py
/petsc/config/PETSc/Configure.py
/petsc/config/install.py
/petsc/lib/petsc/conf/rules
/petsc/src/docs/tex/petsc.bib
/petsc/src/docs/tex/petscapp.bib
/petsc/src/ksp/ksp/examples/tests/ex57.c
/petsc/src/ksp/ksp/examples/tests/output/ex57_1.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
vscat/impls/vscat.c
b0a87a1b22-Aug-2018 Satish Balay <balay@mcs.anl.gov>

Merge branch 'maint'


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/ADIOS2.py
/petsc/config/BuildSystem/config/packages/CoDiPack.py
/petsc/config/BuildSystem/config/packages/adblaslapack.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/revolve.py
/petsc/gmakefile
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscksp.h
/petsc/include/petscoptions.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex54.c
/petsc/src/ksp/ksp/examples/tests/output/ex54_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_1_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_2_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_3.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_3_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_4.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_4_alt.out
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_4b_ksp_lsqr_exact_mat_norm-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_4b_ksp_lsqr_exact_mat_norm-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_latebs-2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_latebs.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_xxt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_xyt.out
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/lsqr/makefile
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/mat/examples/tests/ex94.c
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex56_1.out
/petsc/src/snes/examples/tutorials/output/ex56_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_ml.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.c
/petsc/src/snes/linesearch/impls/shell/linesearchshell.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1_alt_3.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5opt_ic_1.out
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex16adj.c
/petsc/src/ts/examples/tutorials/ex45.c
/petsc/src/ts/examples/tutorials/ex46.c
/petsc/src/ts/examples/tutorials/output/ex11_8.out
/petsc/src/ts/examples/tutorials/output/ex11_9.out
/petsc/src/ts/examples/tutorials/power_grid/ex3.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/ts/trajectory/interface/traj.c
is/is/impls/general/general.c
00199b9321-Aug-2018 Matthew G. Knepley <knepley@gmail.com>

DM+IS: Moved a caching function into IS itself


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/ADIOS2.py
/petsc/config/BuildSystem/config/packages/CoDiPack.py
/petsc/config/BuildSystem/config/packages/adblaslapack.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/revolve.py
/petsc/gmakefile
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscfe.h
/petsc/include/petscksp.h
/petsc/include/petscoptions.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tests/ex54.c
/petsc/src/ksp/ksp/examples/tests/output/ex54_1.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_1_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_2.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_2_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_3.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_3_alt.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_4.out
/petsc/src/ksp/ksp/examples/tests/output/ex54_4_alt.out
/petsc/src/ksp/ksp/examples/tutorials/ex27.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/ksp/examples/tutorials/ex72.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_4b_ksp_lsqr_exact_mat_norm-0.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex27_4b_ksp_lsqr_exact_mat_norm-1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_latebs-2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex56_latebs.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_xxt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_xyt.out
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/lsqr/makefile
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/mat/examples/tests/ex94.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/output/ex12_quad_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex56_1.out
/petsc/src/snes/examples/tutorials/output/ex56_hypre.out
/petsc/src/snes/examples/tutorials/output/ex56_ml.out
/petsc/src/snes/examples/tutorials/output/ex62_bddc_quad.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe.out
/petsc/src/snes/examples/tutorials/output/ex69_q2p1fetidp_deluxe_adaptive.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/fileio/fretrieve.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/leastsquares/examples/tutorials/output/chwirut2_1_alt_3.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5opt_ic.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/output/ex5opt_ic_1.out
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex16adj.c
/petsc/src/ts/examples/tutorials/ex45.c
/petsc/src/ts/examples/tutorials/ex46.c
/petsc/src/ts/examples/tutorials/output/ex11_8.out
/petsc/src/ts/examples/tutorials/output/ex11_9.out
/petsc/src/ts/examples/tutorials/power_grid/ex3.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/ts/trajectory/interface/traj.c
is/is/utils/isdiff.c
d1353b9019-Aug-2018 Barry Smith <bsmith@mcs.anl.gov>

VecGetArray_Nest() requires array returned to be the same as obtained with VecGetArray()

Reported-by: Mike Wick <michael.wick.1980@gmail.com>


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/packages/ADIOS2.py
/petsc/config/BuildSystem/config/packages/CoDiPack.py
/petsc/config/BuildSystem/config/packages/adblaslapack.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/revolve.py
/petsc/gmakefile
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscksp.h
/petsc/include/petscoptions.h
/petsc/include/petscts.h
/petsc/lib/petsc/bin/maint/gcov.py
/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/interface/dm.c
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/petsc/src/sys/objects/pinit.c
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/petsc/src/ts/examples/tutorials/ex11.c
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vscat/impls/vscat.c
3d3059a010-Aug-2018 Vaclav Hapla <vaclav.hapla@erdw.ethz.ch>

ISSetBlockSize_General: removed blockwise contiguity check.

It's no longer relevant and can lead to segfaults.


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is/is/impls/general/general.c
59e7829c07-Aug-2018 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'master' into knepley/feature-plex-parallel-submesh

* master: (2931 commits)
remove N in docs for SNESQN
replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON
fortran: PetscComp

Merge branch 'master' into knepley/feature-plex-parallel-submesh

* master: (2931 commits)
remove N in docs for SNESQN
replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON
fortran: PetscComplex type is missing from fortran
initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized.
Move access of prefix until it is actually used
Remove DMDASplitComm2d(), used in one example that was not tested
Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm
remove unneeded reassignment of same value
Missing CHKERRQ(); Mostly in Tao code
Remove clang static analyser warning about passing NULL variable to strncat()
missing newline in -ts_monitor_extreme
minor fixes for integer counters
Configure: Deal with '__func__' in C89 builds with newer Clang and GCC.
Jenkinsfile: Increased timeout for tests to 5 minutes.
3.9 changes: further clarify removal of -pc_factor_mat_solver_package
Options deprecations: add "PETSc" to inline warning
removing unused variable
MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods.
Add -ts_monitor_extreme
Dev manual: add note on deprecating options database keys
...

Conflicts:
src/dm/impls/plex/examples/tests/ex4.c

show more ...


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vscat/examples/ex3.c
vscat/examples/ex4.c
vscat/examples/ex5.c
vscat/examples/makefile
vscat/examples/output/ex1_1.out
vscat/examples/output/ex1_2.out
vscat/examples/output/ex1_3.out
vscat/examples/output/ex2_1.out
vscat/examples/output/ex2_2.out
vscat/examples/output/ex2_5.out
vscat/examples/output/ex3_1.out
vscat/examples/output/ex3_3.out
vscat/examples/output/ex3_5.out
vscat/examples/output/ex4_1.out
vscat/examples/output/ex4_1_alt.out
vscat/examples/output/ex4_2.out
vscat/examples/output/ex5_1.out
vscat/impls/makefile
vscat/impls/vpscat.c
vscat/impls/vpscat.h
vscat/impls/vpscat_mpi1.c
vscat/impls/vpscat_mpi1.h
vscat/impls/vscat.c
vscat/interface/dlregisvecscat.c
vscat/interface/makefile
vscat/interface/vscreate.c
vscat/makefile
/petsc/systems/Apple/OSX/bin/makedmg
/petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example.xcodeproj/project.pbxproj
/petsc/systems/Apple/OSX/examples/PETSc cocoa example/PETSc cocoa example/PETSc cocoa example-Info.plist
/petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj
/petsc/systems/Apple/iOS/bin/iosbuilder.py
/petsc/systems/Apple/iOS/bin/makedmg
f0d012c603-Aug-2018 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/monitor-ts-extrem'


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/packages/SuperLU.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petscoptions.h
/petsc/include/petscts.h
/petsc/src/docs/tex/manual/developers.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/39.html
/petsc/src/docs/website/documentation/tutorials/HandsOnExercise.html
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tutorials/ex42.c
/petsc/src/ksp/ksp/examples/tutorials/ex50.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex42_tut_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_1.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_3.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2.out
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/pc/impls/factor/factimpl.c
/petsc/src/mat/examples/tests/ex125.c
/petsc/src/mat/examples/tests/ex127.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/baij/seq/baijsolvnat.c
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.F
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.h
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex3.c
/petsc/src/snes/examples/tutorials/output/ex19_tut_1.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_2.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_3_alt.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_4.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_5.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_6.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_7.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8.out
/petsc/src/snes/examples/tutorials/output/ex19_tut_8_alt.out
/petsc/src/sys/objects/options.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/output/ex11_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_3.out
/petsc/src/ts/examples/tutorials/output/ex11_tut_4.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_1.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_2.out
/petsc/src/ts/examples/tutorials/output/ex2_tut_3.out
/petsc/src/ts/interface/ts.c
vec/interface/rvector.c
cc9c3a5902-Aug-2018 Barry Smith <bsmith@mcs.anl.gov>

Add -ts_monitor_extreme

This is useful for monitoring ODEs where the solutions should not grow (for example advection)

Commit-type: feature


/petsc/Jenkinsfile
/petsc/config/examples/arch-jenkins-freebsd-c-single-opt.py
/petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-jenkins-linux-gcc-complex-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-jenkins-mswin-cxx-complex-dbg.py
/petsc/config/examples/arch-jenkins-mswin-double-opt.py
/petsc/config/examples/arch-osx-pgi-pkgs-opt.py
/petsc/config/install.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscts.h
/petsc/src/dm/examples/tutorials/ex20.c
/petsc/src/dm/examples/tutorials/ex21.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/examples/tests/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex6.c
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexindices.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpoint.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmi.c
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ksp/ksp/examples/tutorials/ex67.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_transpose_asm.out
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex226.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex226_1.out
/petsc/src/mat/examples/tests/output/ex226_2.out
/petsc/src/mat/examples/tests/output/ex226_3.out
/petsc/src/mat/examples/tests/output/ex226_4.out
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/tao/examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/impls/mimex/mimex.c
/petsc/src/ts/interface/ts.c
vec/interface/rvector.c
3c4f6cd602-Aug-2018 Karl Rupp <me@karlrupp.net>

VecScatter: Fixed missing CHKERRQ() in ex5.


vscat/examples/ex5.c
3d0d3f3428-Jul-2018 Junchao Zhang <jczhang@mcs.anl.gov>

Bug fix: update vecscatter memcpy optimizations when indices are remapped

Vecscatter and its optimizations are based on indices. Once they are created, they rarely
change. But if indices are remappe

Bug fix: update vecscatter memcpy optimizations when indices are remapped

Vecscatter and its optimizations are based on indices. Once they are created, they rarely
change. But if indices are remapped, the optimizations have to be recalculated too.

Thanks to Glenn E Hammond <gehammo@sandia.gov> for reporting this bug.

show more ...


vscat/impls/vscat.c
67732f2930-Jul-2018 Junchao Zhang <jczhang@mcs.anl.gov>

Add a VecScatterRemap test


vscat/examples/ex5.c
vscat/examples/makefile
vscat/examples/output/ex5_1.out
26a1ca9828-Jul-2018 Junchao Zhang <jczhang@mcs.anl.gov>

Style change: make vecscatter memcpy optimizations more modular


/petsc/Jenkinsfile
/petsc/config/examples/arch-jenkins-freebsd-c-single-opt.py
/petsc/config/examples/arch-jenkins-freebsd-cxx-cmplx-64idx-dbg.py
/petsc/config/examples/arch-jenkins-linux-gcc-complex-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-jenkins-mswin-cxx-complex-dbg.py
/petsc/config/examples/arch-jenkins-mswin-double-opt.py
/petsc/config/install.py
/petsc/config/report_tests.py
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/src/dm/examples/tutorials/ex20.c
/petsc/src/dm/examples/tutorials/ex21.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/examples/tests/ex15.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex26.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex9.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F90
/petsc/src/dm/impls/plex/examples/tutorials/ex6.c
/petsc/src/dm/impls/plex/examples/tutorials/ex7.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexadapt.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexindices.c
/petsc/src/dm/impls/plex/plexnatural.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpoint.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmi.c
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ksp/ksp/examples/tutorials/ex67.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex67_transpose_asm.out
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex226.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex226_1.out
/petsc/src/mat/examples/tests/output/ex226_2.out
/petsc/src/mat/examples/tests/output/ex226_3.out
/petsc/src/mat/examples/tests/output/ex226_4.out
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/snes/examples/tutorials/ex13.c
/petsc/src/snes/examples/tutorials/ex56.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/tao/examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/impls/mimex/mimex.c
vscat/impls/vpscat.c
vscat/impls/vpscat_mpi1.c
43d7f00526-Jul-2018 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/barry/adios'


/petsc/config/BuildSystem/config/functions.py
/petsc/config/BuildSystem/config/packages/ADIOS.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
/petsc/include/petsc/finclude/petscviewer.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vieweradios2impl.h
/petsc/include/petsc/private/vieweradiosimpl.h
/petsc/include/petscviewer.h
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.c
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex9_1.out
/petsc/src/snes/examples/tutorials/output/ex9_2.out
/petsc/src/snes/examples/tutorials/output/ex9_3.out
/petsc/src/snes/examples/tutorials/output/ex9_4.out
/petsc/src/snes/examples/tutorials/output/ex9_5.out
/petsc/src/snes/examples/tutorials/output/ex9_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex9_6.out
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios/makefile
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/classes/viewer/impls/adios2/makefile
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/impls/makefile
/petsc/src/sys/classes/viewer/interface/viewregall.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/python/pythonsys.c
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2f_3.out
vec/examples/tutorials/ex10.c
vec/examples/tutorials/output/ex10_1.out
vec/examples/tutorials/output/ex10_2.out
vec/examples/tutorials/output/ex10_3.out
vec/examples/tutorials/output/ex10_4.out
vec/examples/tutorials/output/ex10_5.out
vec/examples/tutorials/output/ex10_6.out
vec/impls/mpi/pdvec.c
vec/impls/mpi/pvecimpl.h
vec/impls/seq/bvec2.c
vec/interface/vector.c
vec/utils/vecio.c
6fabb17226-Sep-2016 Hong Zhang <hongzhang@anl.gov>

add VecAXPBYPCZ for nest vec to enable explicit rk solvers to work with nest vec


/petsc/config/BuildSystem/config/functions.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscts.h
/petsc/src/docs/tex/manual/part1.tex
/petsc/src/docs/website/documentation/referencing.html
/petsc/src/snes/examples/tutorials/ex9.c
/petsc/src/snes/examples/tutorials/output/ex9_1.out
/petsc/src/snes/examples/tutorials/output/ex9_2.out
/petsc/src/snes/examples/tutorials/output/ex9_3.out
/petsc/src/snes/examples/tutorials/output/ex9_4.out
/petsc/src/snes/examples/tutorials/output/ex9_5.out
/petsc/src/snes/examples/tutorials/output/ex9_5_alt.out
/petsc/src/snes/examples/tutorials/output/ex9_6.out
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/unconstrained/examples/tutorials/eptorsion2f.F
/petsc/src/tao/unconstrained/examples/tutorials/output/eptorsion2f_3.out
/petsc/src/ts/examples/tutorials/hamiltonian/ex1.c
/petsc/src/ts/examples/tutorials/hamiltonian/makefile
/petsc/src/ts/examples/tutorials/hamiltonian/output/ex1_1.out
/petsc/src/ts/examples/tutorials/hamiltonian/output/ex1_2.out
/petsc/src/ts/impls/makefile
/petsc/src/ts/impls/symplectic/bsi/bsi.c
/petsc/src/ts/impls/symplectic/bsi/makefile
/petsc/src/ts/impls/symplectic/makefile
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsregall.c
/petsc/src/ts/utils/dmts.c
vec/impls/nest/vecnest.c
7b56e58c24-Jul-2018 Satish Balay <balay@mcs.anl.gov>

adios: fixes

- fix configure to pass in MPI compilers [instead of --with-mpi=DIR. Similarly attempt to use PETSc configure detected values for hdf5, netcdf, zlib etc..
- fix compiler error with usin

adios: fixes

- fix configure to pass in MPI compilers [instead of --with-mpi=DIR. Similarly attempt to use PETSc configure detected values for hdf5, netcdf, zlib etc..
- fix compiler error with using '0' for ADIOS_STATISTICS_FLAG
- declare Petsc_adios_group as PETSC_EXTERN - this way its useable from -lpetscvec [with-visibility=1]
- also move Petsc_adios_group to petscimpl.h - to avoid duplicate definitions
- fix fortran examples [by adding adios initialization to fortran interface
- fix compile error with ex10

show more ...


/petsc/config/BuildSystem/config/packages/ADIOS.py
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vieweradiosimpl.h
/petsc/src/sys/classes/viewer/impls/adios/adios.c
/petsc/src/sys/classes/viewer/impls/adios2/adios2.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/pinit.c
vec/examples/tutorials/ex10.c
d191c03024-Jul-2018 Barry Smith <bsmith@mcs.anl.gov>

Example instances require hdf5 installed

Commit-type: bug-fix, portability-fix
Reported-by: nightly tests
Thanks-to: Satish Balay <balay@mcs.anl.gov>


vec/examples/tutorials/ex10.c

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