History log of /petsc/src/vec/ (Results 3376 – 3400 of 6950)
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c02fb78519-Sep-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'maint'

* maint:
Fix for accidentally duplicated refcount decrement in dm->x
PetscLayoutCreate doc: format code block and list

7cee435b19-Sep-2013 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'knepley/remove-sieve'

Conflicts:
src/dm/impls/mesh/examples/tests/output/ex10_0.out
src/dm/impls/mesh/examples/tests/output/ex10_1.out
src/dm/impls/mesh/examples/tests/output/ex11f9

Merge branch 'knepley/remove-sieve'

Conflicts:
src/dm/impls/mesh/examples/tests/output/ex10_0.out
src/dm/impls/mesh/examples/tests/output/ex10_1.out
src/dm/impls/mesh/examples/tests/output/ex11f90_0.out
src/dm/impls/mesh/examples/tests/output/ex11f90_1.out
src/dm/impls/mesh/examples/tests/output/ex3_0.out
src/dm/impls/mesh/examples/tests/output/ex3_1.out
src/dm/impls/mesh/examples/tests/output/ex3_2.out
src/dm/impls/mesh/examples/tests/output/ex3_3.out
src/dm/impls/mesh/examples/tests/output/ex8_0.out
src/dm/impls/mesh/examples/tests/output/ex9f90_0.out
src/dm/impls/mesh/examples/tests/output/ex9f90_1.out
src/dm/impls/mesh/mesh.c
src/dm/interface/dlregisdmdm.c
src/vec/vec/interface/vecregall.c

show more ...


/petsc/bin/win32fe/win32fe.exe
/petsc/bin/win32fe/win32feutils.dll
/petsc/conf/gmakegen.py
/petsc/conf/rules
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/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/__init__.py
/petsc/config/BuildSystem/config/packages/fiat.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/BuildSystem/config/programs.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/FEM.py
/petsc/config/PETSc/packages/Generator.py
/petsc/config/PETSc/packages/PaStiX.py
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/petsc/config/PETSc/packages/tetgen.py
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/petsc/include/petscdm.h
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/petsc/src/snes/utils/makefile
/petsc/src/sys/classes/random/examples/makefile
/petsc/src/sys/objects/olist.c
/petsc/src/sys/objects/pinit.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/f90-mod/petsctsmod.F
/petsc/src/ts/interface/tscreate.c
vec/interface/vecregall.c
270bf2e719-Sep-2013 Jed Brown <jedbrown@mcs.anl.gov>

Sys: typedef PetscObjectState and change all accessors

State is used to manage caches of intermediate structures. If state
overflowed, it would allow a cached value to be reused incorrectly,
leadin

Sys: typedef PetscObjectState and change all accessors

State is used to manage caches of intermediate structures. If state
overflowed, it would allow a cached value to be reused incorrectly,
leading to wrong results or possibly corruption. In long runs, it is
conceivable for an object to undergo 2^32 state transitions between
encounters, thus it is important to use a 64-bit counter. The typedef
is just for clarity.

show more ...

59e4f3c817-Sep-2013 Barry Smith <bsmith@mcs.anl.gov>

unified PetscObjectStateXXX() commands. Fixed PetscObjectStateQuery() to PetscObjectStateGet()


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/petsc/src/snes/examples/tutorials/output/ex62_45.out
/petsc/src/snes/examples/tutorials/output/ex62_5.out
/petsc/src/sys/classes/random/examples/makefile
/petsc/src/sys/ftn-custom/zsys.c
/petsc/src/sys/objects/olist.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/state.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/makefile
/petsc/src/ts/interface/ts.c
vec/impls/mpi/commonmpvec.c
vec/interface/rvector.c
vec/utils/vinv.c
04a5995215-Sep-2013 Barry Smith <bsmith@mcs.anl.gov>

fixes to ex10.c Jacobian
fixes to PetscFGets()
revert attempt to inline ISLocalToGlobalApply()


/petsc/config/BuildSystem/config/packages/fiat.py
/petsc/config/PETSc/FEM.py
/petsc/config/PETSc/packages/Generator.py
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/petsc/src/sys/fileio/mprint.c
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is/utils/isltog.c
456fcb7912-Sep-2013 Jed Brown <jedbrown@mcs.anl.gov>

PetscLayoutCreate doc: format code block and list


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/petsc/src/snes/examples/tutorials/output/ex70_0.out
/petsc/src/snes/examples/tutorials/output/ex70_1.out
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/examples/tutorials/ex11.c
/petsc/src/sys/examples/tutorials/makefile
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/ptype.c
is/utils/pmap.c
a264d7a610-Sep-2013 Barry Smith <bsmith@mcs.anl.gov>

fix name for PetscOptionsFList() and get FList() and EList() working properly with SAWs legal values

cc85fe4d04-Sep-2013 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/dmvecmattypes' into barry/saws

Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc

Conflicts:
src/ksp/ksp/interface/ams/kspams.c
s

Merge branch 'barry/dmvecmattypes' into barry/saws

Needed to work with version of PETSc that did not have constant calls to VecSetFromOptions() etc

Conflicts:
src/ksp/ksp/interface/ams/kspams.c
src/snes/impls/composite/snescomposite.c
src/snes/impls/gs/snesgs.c
src/snes/impls/nasm/nasm.c
src/snes/impls/ngmres/snesngmres.c

show more ...


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/petsc/src/sys/utils/sortd.c
/petsc/src/sys/webserver/petscwebclient.c
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/petsc/src/ts/examples/tests/ex25.c
/petsc/src/ts/examples/tests/ex5.c
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/petsc/src/ts/impls/implicit/gl/gl.c
/petsc/src/ts/impls/implicit/sundials/sundials.c
/petsc/src/ts/interface/ts.c
is/ao/impls/basic/aobasic.c
is/ao/impls/mapping/aomapping.c
is/ao/impls/memscalable/aomemscalable.c
is/ao/interface/ao.c
is/is/impls/block/block.c
is/is/impls/general/general.c
is/sf/impls/basic/sfbasic.c
is/utils/isltog.c
is/utils/vsectionis.c
vec/impls/mpi/mpicusp/mpicusp.cu
vec/impls/mpi/mpiviennacl/mpiviennacl.cxx
vec/impls/mpi/pbvec.c
vec/impls/mpi/pdvec.c
vec/impls/seq/bvec2.c
vec/impls/seq/bvec3.c
vec/impls/seq/seqcusp/cuspvecimpl.h
vec/impls/seq/seqcusp/veccusp.cu
vec/impls/seq/seqviennacl/vecviennacl.cxx
vec/interface/vector.c
vec/utils/veccusp/makefile
vec/utils/veccusp/vscatcusp.c
vec/utils/vinv.c
vec/utils/vpscat.c
vec/utils/vpscat.h
vec/utils/vsection.c
/petsc/tutorials/HandsOnExercise.html
05eca2e303-Sep-2013 Matthew G. Knepley <knepley@gmail.com>

PetscSection: Added an index for optimization of closure queries
- Added PetscSectionGet/SetClosureIndex()
- The index is keyed to the DM which built it (use PetscObject)
- Only use a single key for

PetscSection: Added an index for optimization of closure queries
- Added PetscSectionGet/SetClosureIndex()
- The index is keyed to the DM which built it (use PetscObject)
- Only use a single key for now since a lot of checking would be slow

show more ...

7831971231-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-plex-parallel'

* knepley/fix-plex-parallel:
DMPlex: Fixed creation of global sections - The size of neg[] must be all of nroots instead of pEnd-pStart
DMPlex: Fixed coh

Merge branch 'knepley/fix-plex-parallel'

* knepley/fix-plex-parallel:
DMPlex: Fixed creation of global sections - The size of neg[] must be all of nroots instead of pEnd-pStart
DMPlex: Fixed cohesive submesh SF - I misclassified points which were not owned in the original mesh, but are owned in the submesh
DMPlex: Fixed bug with cohesive submesh SF - Needed to put in owned subpoints since they do not come from leaves OR from the original mesh
DMPlex: Fix out of bounds access for empty mesh
DMPlex: Fixed creation of PetscSF in DMPlexCreateCohesiveSubmesh_Uninterpolated() - Could not assume that original owner of subvertex owned it in submesh because it might have no subcells - Needed to redetermine ownership of subpoints
Plex VTK: Handle missing submesh pieces in parallel
DMPlex: Initializeremote locations when calculating SF for submesh
DMPlex: FIxed hang in DMPlexCreateCohesiveSubmesh()
DMPlex: Added PetscSF creation to DMPlexCreateCohesiveSubmesh_Uninterpolated() - Added DMPlexFilterPoint_Internal() - Still need this for the interpolated variant
DMPlex: Remove dead code
DMPlex: Removed aggressive checks for cohesive cells - How should we handle extraction in parallel?
PetscSection: PetscSectionCreateSubmeshSection() now can take an empty IS
DMPlex: Allow submesh creation with empty mesh and empty label
DMPlex: Allow DMPlexOrient() of empty mesh

Conflicts:
src/dm/impls/plex/plexsubmesh.c

show more ...

aa2d57e930-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES

This option was mostly redundant because normal shared libraries satisfy
all the same needs. This commit adds the run-time option
-dynami

Remove --with-dynamic-loading / PETSC_USE_DYNAMIC_LIBRARIES

This option was mostly redundant because normal shared libraries satisfy
all the same needs. This commit adds the run-time option
-dynamic_library_preload that can be used to load/initialize all the
packages in advance, as used to be done when --with-dynamic-loading.

The PetscDLLibraryRegister_petscxxx functions have been kept, but are
not called unless -dynamic_library_preload is used. The petsc-dev
discussion, "Why --with-dynamic-loading?" did not reach consensus about
whether this was ever useful, so it may also be removable.

show more ...


/petsc/bin/TOPSInstaller.py
/petsc/bin/maint/asterix-test.sh
/petsc/bin/maint/package-test.sh
/petsc/bin/maint/toclapack.sh
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/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/interface/dlregissnes.c
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/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.c
/petsc/src/sys/classes/viewer/interface/dlregispetsc.c
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/petsc/src/sys/dll/dlimpl.c
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/petsc/src/sys/logging/utils/classlog.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/mpits.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/characteristic/interface/slregis.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/ssp/ssp.c
/petsc/src/ts/impls/implicit/gl/gl.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/tscreate.c
/petsc/src/ts/utils/dmts.c
is/ao/impls/mapping/aomapping.c
is/ao/interface/ao.c
is/is/interface/isreg.c
is/sf/interface/sf.c
is/utils/isltog.c
is/utils/vsectionis.c
pf/interface/pf.c
vec/interface/dlregisvec.c
vec/interface/veccreate.c
3ac19ecb29-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

PetscSection: Added docs for Fortran binding for VecSetValuesSection()

3745ab2829-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

Vec: Removed old F90 binding for PetscSection

2efd822528-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

Vec: Correct VecUniqueEntries() for 64-bit indices


/petsc/config/BuildSystem/config/package.py
/petsc/config/PETSc/packages/valgrind.py
/petsc/config/builder.py
/petsc/include/petsc-private/dmimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/share/petsc/datafiles/meshes/simpleblock-100.exo
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/plex/examples/tests/ex7.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
/petsc/src/dm/impls/plex/examples/tests/output/ex8_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex8_5.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plexvtk.c
/petsc/src/dm/impls/plex/plexvtu.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmi.c
/petsc/src/docs/manualpages-sec/header_PetscSF
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/index.html
/petsc/src/ksp/ksp/utils/schurm.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex31.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex72.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/makefile
vec/utils/vinv.c
5f6db4d028-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/fix-vecsetvaluessection'

* knepley/fix-vecsetvaluessection:
PetscSection: Fixed VecSetValuesSection()

ea6bb0ab28-Aug-2013 Matthew G. Knepley <knepley@gmail.com>

Merge branch 'knepley/reordering'

* knepley/reordering:
Mat ex170: Comments
Mat ex170: Test for MatMult() using max instead of plus - Finds the number of connected components in parallel - Can s

Merge branch 'knepley/reordering'

* knepley/reordering:
Mat ex170: Comments
Mat ex170: Test for MatMult() using max instead of plus - Finds the number of connected components in parallel - Can still optimize better in parallel
Mat: Added stuff to let me do (max, mult) algebra things for reordering - Added MatMultMax_SeqAIJ() and MatMultAddMax_SeqAIJ() - Added PetscSparseDenseMaxDot()
Vec: Added VecUniqueEntries() - This is purely diagnostic, but I think its useful for tests
Sys: Added PetscSortRemoveDupsReal()

Conflicts:
config/builder.py

show more ...

4b5a970c26-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'jed/is-view-from-options'

Fix SEGV on -ao_view, which was being called from AOCreate.

* jed/is-view-from-options:
AO: fix erroneous processing of -ao_view and factor into AOViewFrom

Merge branch 'jed/is-view-from-options'

Fix SEGV on -ao_view, which was being called from AOCreate.

* jed/is-view-from-options:
AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions
doc: fix named argument in {Vec,Mat,DM}ViewFromOptions

show more ...

817ea41125-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions

AOCreate was calling -ao_view before ao->ops->view could be set, causing
SEGV. Move the dispatch to the convenience creati

AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions

AOCreate was calling -ao_view before ao->ops->view could be set, causing
SEGV. Move the dispatch to the convenience creation functions and
consolidate into AOViewFromOptions.

Reported-by: Shao-Ching Huang <huangsc@gmail.com>

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dba0e79325-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

doc: fix named argument in {Vec,Mat,DM}ViewFromOptions

b8e6fb3721-Aug-2013 Karl Rupp <rupp@iue.tuwien.ac.at>

Merge branch 'karlrupp/fix-viennacl-petscobject-cast'

c27dc3d721-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'jed/fix-viewer-matlab-info' into maint

* jed/fix-viewer-matlab-info:
Viewer: fix Binary Matlab viewer info to use '#' instead of '%'

d5d1057a20-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'jed/fix-viewer-matlab-info'

* jed/fix-viewer-matlab-info:
Viewer: fix Binary Matlab viewer info to use '#' instead of '%'

eb9baa1219-Aug-2013 Barry Smith <bsmith@mcs.anl.gov>

replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly

replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN()
The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed

show more ...

f7daeb2a19-Aug-2013 Karl Rupp <rupp@iue.tuwien.ac.at>

ViennaCL: Fixed required casts to PetscObject when calling PetscLogObject*()

d45619de18-Aug-2013 Jed Brown <jedbrown@mcs.anl.gov>

Merge branch 'maint'

* maint:
Vec: fix flop counting to use map->n instead of non-existent map->m

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