Kokkos: add explicit execution space (stream or queue) to Kokkos/KK functions

Merge remote-tracking branch 'origin/release'

CUDA: add a workaround using thrust::get<id>(var) instead of var.get<id>() to access elements of a tuple

Otherwise, cuda-12.4.0 gives error: class "cuda::std::__4::tuple<PetscScalar, PetscScalar, Pe

CUDA: add a workaround using thrust::get<id>(var) instead of var.get<id>() to access elements of a tuple

Otherwise, cuda-12.4.0 gives error: class "cuda::std::__4::tuple<PetscScalar, PetscScalar, PetscScalar, PetscScalar>" has no member "get"

Reported-by: Jesse Madsen <jesse.madsen175@gmail.com>

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Minor formatting fixes

CI: update to clang-format-18

Minor housekeeping

Remove some unneeded parentheses

Remove extra "" after format specifier ending a string

git grep -l -E "_FMT \"\"," | xargs sed -r -i'' 's#_FMT \"\",#_FMT,#g'

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefan

Remove carriage return in Petsc(Assert|Check)()

git grep -l -E "Petsc(Assert|Check)\(.*\\\n\"[,)]" | xargs sed -r -i'' 's#Petsc(Assert|Check)\((.*)\\n"([,)])#Petsc\1\(\2\"\3#g'

Suggested-by: Stefano Zampini

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Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g

Remove multiple parentheses and extra semicolon

git grep -l -E "\(\([a-zA-Z0-9_]+\)\(\*[a-zA-Z0-9_]+\)[, )]" | xargs sed -r -i'' 's#\(\(([a-zA-Z0-9_]+)\)\(\*([a-zA-Z0-9_]+)\)([, )])#\(\(\1\)\*\2\3#g'
git grep -l -E "Petsc(.)*\(\(\*[a-zA-Z0-9_]*\)," | xargs sed -r -i'' 's#Petsc([a-zA-Z0-9_]*)\(\(\*([a-zA-Z0-9_]*)\), #Petsc\1(*\2, #g'
git grep -l -E "([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)" | xargs sed -r -i'' 's#([\!\&\~\*\(]|\)\)|\([^,\*\(]+\**\))\(([a-zA-Z0-9_]+((\.|->)[a-zA-Z0-9_]+|\[[a-zA-Z0-9_ \%\+\*\-]+\])+)\)#\1\2#g'

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checkbadSource: rules for PetscFunctionBegin and derivatives

Document that PetscViewerGetSubViewer() is collective on the outer viewer and fix bugs.

Reported-by: Pierre Jolivet

Section: Add PetscSectionCreateComponentSubsection()

Consolidate PETSc stream types

Fix words appearing twice in a row for no good reason

Merge branch 'knepley/fix-plex-io-section-perm' into 'main'

Plex: Flexible creation of section permutations

See merge request petsc/petsc!7258

Plex: Allow global section to ignore the local section permutation on output

Typos

Merge branch 'barry/2024-01-19/typedef-snes-functions' into 'main'

add typedef for functions passed to SNESSetFunction() etc to match approach in TS

See merge request petsc/petsc!7206

Change the use of the _Fn suffix to indicate a typedef of a function to just Fn

As determined on a vote on GitLab

Fix places where PetscUseTypeMethod() and related macros should be used.

Vec: add better error message in the unsupported VecReplaceArray() on the first Vec got from VecDuplicateVecs()

close #1537

VecISXXX: always require IS argument to be non NULL

add collectiveness specification to docs

Vec: add VecISShift

Merge remote-tracking branch 'origin/release'