History log of /petsc/src/vec/ (Results 4001 – 4025 of 6950)
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24ccd87621-Dec-2011 Jed Brown <jed@59A2.org>

Implement PetscBGScatterBegin/End, add to test suite

Hg-commit: 9d56cc28164b525263ef09865b2f4436e4d7b0ba


/petsc/src/dm/impls/mesh/examples/tests/makefile
bg/bg.c
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_5.out
c14b4dbc21-Dec-2011 Jed Brown <jed@59A2.org>

merge PetscBG updates

Hg-commit: 81e0c2b34ad8b8297720fb90170cfb47dbcbd3fd


/petsc/include/private/matimpl.h
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/sys/objects/pthread/lockfree.c
/petsc/src/sys/objects/pthread/pthread.c
/petsc/src/sys/objects/pthread/pthreadpool_chain.c
/petsc/src/sys/objects/pthread/pthreadpool_main.c
/petsc/src/sys/objects/pthread/pthreadpool_tree.c
vec/impls/mpi/mpipthread/mpivecpthread.c
3adf7df621-Dec-2011 Jed Brown <jed@59A2.org>

Updates for PetscBG

* PetscBGGatherBegin()/End
* PetscBGSetFromOptions()
* PetscBGSynchronizationType, -bg_synchronization <FENCE,LOCK,ACTIVE>
* Move all synchronization except LOCK into PetscBGGetW

Updates for PetscBG

* PetscBGGatherBegin()/End
* PetscBGSetFromOptions()
* PetscBGSynchronizationType, -bg_synchronization <FENCE,LOCK,ACTIVE>
* Move all synchronization except LOCK into PetscBGGetWindow() and PetscBGRestoreWindow(), LOCK must remain outside.
* Add tests for these to the tutorial

Hg-commit: 2dceca9c2dd873b8e7f2db159fb92e0b2df58f81

show more ...


/petsc/include/petscbg.h
/petsc/include/private/bgimpl.h
/petsc/src/sys/viewer/impls/ams/ams.c
bg/bg.c
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_1.out
bg/examples/tutorials/output/ex1_2.out
bg/examples/tutorials/output/ex1_3.out
bg/examples/tutorials/output/ex1_4.out
7578468620-Dec-2011 Shri Abhyankar <abhyshr@mcs.anl.gov>

Fixed few bugs in MPI_Pthread vector class.

Hg-commit: 2dd7534b83425b205cddaff689eff718aab36b55


/petsc/include/private/matimpl.h
/petsc/src/benchmarks/benchmarkExample.py
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/dm/impls/mesh/examples/tests/ex3.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/ngmres/snesngmres.h
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesls.c
/petsc/src/sys/objects/pthread/pthread.c
vec/impls/mpi/mpipthread/mpivecpthread.c
639119aa19-Dec-2011 Jed Brown <jed@59A2.org>

Merge PetscBG updates

Hg-commit: 22a06792c20cdef150a242abf7d3e6b3fcc56ad1


/petsc/bin/maint/generateetags.py
/petsc/bin/matlab/PetscBinaryRead.m
/petsc/config/PETSc/packages/hwloc.py
/petsc/include/petscpc.h
/petsc/include/private/dmimpl.h
/petsc/include/private/matimpl.h
/petsc/include/sieve/Mesh.hh
/petsc/include/sieve/Overlap.hh
/petsc/include/sieve/Partitioner.hh
/petsc/src/benchmarks/streams/OpenMPVersion.c
/petsc/src/benchmarks/streams/PthreadVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/dm/impls/adda/adda.c
/petsc/src/dm/impls/cartesian/cartesian.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/iga/igacreate.c
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/dm/impls/mesh/examples/tests/ex3.c
/petsc/src/dm/impls/mesh/meshcreate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/download/petsc-patches.html
/petsc/src/docs/website/index.html
/petsc/src/ksp/ksp/examples/tests/ex27.c
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tests/ex36.c
/petsc/src/ksp/ksp/examples/tutorials/ex40.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/pc/examples/tutorials/ex1.c
/petsc/src/ksp/pc/examples/tutorials/ex2.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/gamg/createProlongation.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/gamg.h
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/mat/examples/tests/ex73.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tutorials/ex22.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/ngmres/snesngmres.h
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/rsaug/virsaug.c
/petsc/src/snes/interface/snesls.c
/petsc/src/sys/dll/makefile
/petsc/src/sys/objects/pthread/lockfree.c
/petsc/src/sys/objects/pthread/pthread.c
/petsc/src/sys/utils/sorti.c
bg/bg.c
vec/impls/mpi/mpicusp/mpicusp.cu
vec/impls/mpi/mpipthread/makefile
vec/impls/seq/seqpthread/vecpthread.c
vec/impls/seq/seqpthread/vecpthreadimpl.h
vec/impls/seq/vsection.c
vec/interface/dlregisvec.c
vec/interface/vector.c
1842ad8219-Dec-2011 Jed Brown <jed@59A2.org>

Implement PetscBGFetchAndOpBegin/End()

Hg-commit: 9b6f6a430bc1f5092a67b3e7897f7f5dd0097838


bg/bg.c
bg/examples/tutorials/ex1.c
0d4d8d9519-Dec-2011 Jed Brown <jed@59A2.org>

PetscBG cleanup, restore MPI_Win_fence() asserts

Hg-commit: 072e99b412320e30d3494a618da7326e0abb3b34


/petsc/include/petscbg.h
bg/bg.c
c8cd296d19-Dec-2011 Matthew G Knepley <knepley@gmail.com>

Removed spurious check

Hg-commit: 601a988e66b7235439e5d86d7e3f821603b67fcb


/petsc/include/sieve/Partitioner.hh
/petsc/src/ksp/pc/impls/gamg/gamg.c
bg/bg.c
97263f7a18-Dec-2011 Barry Smith <bsmith@mcs.anl.gov>

fixed not compiling in src/vec/vec/impls/mpi/mpipthread due to double quotes being used and not single for legacy make
also fixed legacy make not passing valgrind include directory information in src

fixed not compiling in src/vec/vec/impls/mpi/mpipthread due to double quotes being used and not single for legacy make
also fixed legacy make not passing valgrind include directory information in src/sys/dll

Hg-commit: e3cc8783f9a32d487244d2809902e192cd5cfee4

show more ...


/petsc/include/private/matimpl.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/sys/dll/makefile
vec/impls/mpi/mpipthread/makefile
ee3a9e2118-Dec-2011 Barry Smith <bsmith@mcs.anl.gov>

commit after merge

Hg-commit: 0e5fb828cbe11166728cf4fed5e869a0956e2f7e


/petsc/include/private/matimpl.h
/petsc/src/benchmarks/streams/OpenMPVersion.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/pc/impls/gamg/createProlongation.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/fft/fftw/fftw.c
vec/impls/mpi/mpicusp/mpicusp.cu
vec/impls/seq/seqpthread/vecpthread.c
vec/impls/seq/seqpthread/vecpthreadimpl.h
5c7a89a617-Dec-2011 Barry Smith <bsmith@mcs.anl.gov>

fix to ex73 that tests external packages, fix for permuting vector it passed the old "is" in the new slot

Hg-commit: 3b4247e0742d61a197a49aa4019b1cd95783edea


/petsc/bin/matlab/PetscBinaryRead.m
/petsc/include/private/dmimpl.h
/petsc/include/private/matimpl.h
/petsc/src/dm/impls/adda/adda.c
/petsc/src/dm/impls/cartesian/cartesian.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/iga/igacreate.c
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/dm/impls/mesh/meshcreate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/download/petsc-patches.html
/petsc/src/ksp/ksp/examples/tests/ex27.c
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tests/ex36.c
/petsc/src/ksp/ksp/examples/tutorials/ex40.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex56.c
/petsc/src/ksp/pc/examples/tutorials/ex1.c
/petsc/src/ksp/pc/examples/tutorials/ex2.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/examples/tests/ex73.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tutorials/ex22.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/rsaug/virsaug.c
/petsc/src/sys/utils/sorti.c
vec/interface/vector.c
3f97167f16-Dec-2011 Satish Balay <balay@mcs.anl.gov>

merge from 32

Hg-commit: a7826ed6fd24a9a5944958807032c3389335ecbb


vec/impls/mpi/mpicusp/mpicusp.cu
791e6a4a16-Dec-2011 Shri Abhyankar <abhyshr@mcs.anl.gov>

Added TDot,MTDot,and AXPBY methods for sequential pthread vector class.

Hg-commit: caa433577d05d3bce33f70b22d88fdeea5eac646


/petsc/bin/matlab/PetscBinaryRead.m
/petsc/include/private/dmimpl.h
/petsc/include/private/matimpl.h
/petsc/src/benchmarks/streams/OpenMPVersion.c
/petsc/src/dm/impls/adda/adda.c
/petsc/src/dm/impls/cartesian/cartesian.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/iga/igacreate.c
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/dm/impls/mesh/meshcreate.c
/petsc/src/dm/impls/redundant/dmredundant.c
/petsc/src/dm/impls/sliced/sliced.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/download/petsc-patches.html
/petsc/src/ksp/ksp/examples/tests/ex27.c
/petsc/src/ksp/ksp/examples/tests/ex33.c
/petsc/src/ksp/ksp/examples/tests/ex36.c
/petsc/src/ksp/ksp/examples/tutorials/ex40.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/pc/examples/tutorials/ex1.c
/petsc/src/ksp/pc/examples/tutorials/ex2.c
/petsc/src/ksp/pc/impls/gamg/createProlongation.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/seq/aij.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/fft/fftw/fftw.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/snes/examples/tutorials/ex22.c
/petsc/src/snes/examples/tutorials/ex48.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/rsaug/virsaug.c
vec/impls/seq/seqpthread/vecpthread.c
vec/impls/seq/seqpthread/vecpthreadimpl.h
4ac6e73715-Dec-2011 Matthew G Knepley <knepley@gmail.com>

Small improvement for PetscSection viewing

Hg-commit: 913b2c26f73f1d93829e8b83854b6894e38032ce


/petsc/include/petscpc.h
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/gamg.h
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/fft/fftw/fftw.c
vec/impls/seq/vsection.c
349bc45015-Dec-2011 Matthew G Knepley <knepley@gmail.com>

Protect BG initialization

Hg-commit: 810dbd7a4a5851fa709ba474d1306d8c2e635043


/petsc/include/sieve/Mesh.hh
/petsc/src/docs/website/index.html
/petsc/src/ksp/pc/impls/gamg/gamg.c
vec/interface/dlregisvec.c
2a43252c14-Dec-2011 Shri Abhyankar <abhyshr@mcs.anl.gov>

Commit after merge.

Hg-commit: 3ffbd222c172c8def9ba55c873d1877dfe302d7a


/petsc/bin/maint/generateetags.py
/petsc/config/PETSc/packages/hwloc.py
/petsc/include/petscbg.h
/petsc/include/petscctable.h
/petsc/include/private/bgimpl.h
/petsc/include/private/matimpl.h
/petsc/include/sieve/Overlap.hh
/petsc/src/benchmarks/streams/PthreadVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mmbaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/sys/objects/pthread/lockfree.c
/petsc/src/sys/utils/ctable.c
bg/bg.c
bg/examples/makefile
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_1.out
bg/examples/tutorials/output/ex1_2.out
bg/makefile
is/utils/isblock.c
vec/interface/dlregisvec.c
0446599c14-Dec-2011 Matthew G Knepley <knepley@gmail.com>

Fix BG package initilization

Hg-commit: 8e1280c6d333d048491895b27607a491d3bf1801


/petsc/bin/maint/generateetags.py
vec/interface/dlregisvec.c
2b6ea82f14-Dec-2011 Jed Brown <jed@59A2.org>

Implement PetscBGComputeDegreeBegin()

Hg-commit: dd16818facfaf0e934045d62368fb6719ff1bb7d


/petsc/include/petscbg.h
/petsc/include/private/bgimpl.h
bg/bg.c
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_3.out
dff38eb714-Dec-2011 Jed Brown <jed@59A2.org>

Add comments to PetscBG example

Hg-commit: 199bab0ea052fc92ce8e4abb56afc442629a19c8


bg/examples/tutorials/ex1.c
4455cb8514-Dec-2011 Jed Brown <jed@59A2.org>

Implement PetscBGReduceBegin/End

Hg-commit: 43b60ffdd8fb546ba93d96c361af2258a4dfc426


bg/bg.c
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_1.out
bg/examples/tutorials/output/ex1_2.out
bdc57a8414-Dec-2011 Jed Brown <jed@59A2.org>

Finish PetscBG example for Bcast. Works with MPICH2, fails with my Open MPI, don't know why

Hg-commit: 9bfb04120471205cd0cfbd83c806d6614e582d00


/petsc/include/petscbg.h
/petsc/include/private/bgimpl.h
bg/bg.c
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/examples/tutorials/output/ex1_1.out
9402f26313-Dec-2011 Shri Abhyankar <abhyshr@mcs.anl.gov>

Removed redundant variables.

Hg-commit: 9583926bf72b217ec80c5ac023264955be8bec91


/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/snes/examples/tutorials/makefile
vec/impls/seq/seqpthread/vecpthread.c
66995d0a13-Dec-2011 Shri Abhyankar <abhyshr@mcs.anl.gov>

Removed previous VecMDot_SeqPThread implementation since it did not respect data locality and added a new one that does.

Hg-commit: 4d064595a43216bfd7fc4428cd9e132f51f03bb9


/petsc/include/private/matimpl.h
vec/impls/seq/seqpthread/vecpthread.c
2c276e1013-Dec-2011 Jed Brown <jed@59A2.org>

Add PetscBG examples directory and minimal example with viewing

Hg-commit: be23e1fc0f19b4d48e32a8bccb68a1f8a5201cdf


/petsc/include/private/bgimpl.h
bg/bg.c
bg/examples/makefile
bg/examples/tutorials/ex1.c
bg/examples/tutorials/makefile
bg/makefile
3861aac313-Dec-2011 Jed Brown <jed@59A2.org>

Add InsertMode argument to PetscTableAdd()

Hg-commit: 2cec7fc947c83dd32154ec42fd5ca5e989a3ecc5


/petsc/include/petscctable.h
/petsc/src/dm/impls/mesh/examples/tests/ex2.c
/petsc/src/mat/impls/aij/mpi/mmaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/pastix/pastix.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mmbaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mmsbaij.c
/petsc/src/snes/examples/tutorials/makefile
/petsc/src/sys/utils/ctable.c
is/utils/isblock.c

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