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164282b923-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/dmplexforest' into 'main'

Updates to DMPLEX and DMFOREST

See merge request petsc/petsc!7217


/petsc/doc/changes/dev.rst
/petsc/include/petscdmplex.h
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/plex/tests/ex21.c
/petsc/src/dm/impls/plex/tests/output/ex12_16.out
/petsc/src/dm/impls/plex/tests/output/ex12_7.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-False_parmetis.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-False_ptscotch.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-True_parmetis.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-True_ptscotch.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_0.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_1.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_10.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_12.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_13.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_14.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_15.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_16.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_17.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_18.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_19.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_2.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_3.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_4.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_5.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_6.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_7.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_8.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_9.out
/petsc/src/dm/impls/plex/tests/output/ex27_quad_fm.out
/petsc/src/dm/impls/plex/tests/output/ex27_quad_pm.out
/petsc/src/dm/impls/plex/tests/output/ex27_tri_fm.out
/petsc/src/dm/impls/plex/tests/output/ex27_tri_pm.out
/petsc/src/dm/impls/plex/tests/output/ex47_0.out
/petsc/src/dm/impls/plex/tests/output/ex47_1.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0_perm.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0_perm.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t2_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t5_0.out
/petsc/src/dm/impls/plex/tests/output/ex98_0.out
/petsc/src/dm/impls/plex/tests/output/ex98f90_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1_1.out
/petsc/src/dm/impls/plex/tutorials/output/ex1f90_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1f90_1.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_0_outformat-hdf5_petsc_parmetis.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_1_outformat-hdf5_petsc_parmetis.out
/petsc/src/dm/impls/plex/tutorials/output/ex5_1_outformat-hdf5_xdmf_parmetis.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/ts/utils/dmplexts.c
is/section/interface/section.c
is/tests/output/ex5_0.out
is/tests/output/ex5_1.out
cb35eacc23-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jolivet/petsctrytypemethod' into 'main'

Use Petsc[Use|Try]TypeMethod when possible

See merge request petsc/petsc!7213


/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/impls/plex/transform/interface/plextransform.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/mat/graphops/coarsen/coarsen.c
/petsc/src/mat/graphops/color/interface/matcoloring.c
/petsc/src/mat/graphops/partition/partition.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/tests/output/ex227_no_prefix.out
/petsc/src/mat/tests/output/ex227_prefix.out
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/characteristic/interface/characteristic.c
is/ao/interface/ao.c
is/is/interface/index.c
is/section/interface/section.c
is/utils/isltog.c
544cb43c15-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

Minor: fix typos


/petsc/.gitlab-ci.yml
/petsc/doc/build_classic_docs.py
/petsc/include/petsc/private/petscimpl.h
/petsc/lib/petsc/bin/maint/check-each-commit.sh
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/mpi/pcmpi.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/interface/ftn-custom/zmatproductf.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/sys/logging/handler/impls/default/logdefault.c
/petsc/src/sys/logging/plog.c
is/sf/interface/sf.c
96b6676f23-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/2024-01-22/add-vecshift-event' into 'main'

Add Vec_Shift logging event

See merge request petsc/petsc!7215


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdmplextypes.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/tests/ex33.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/interface/ftn-custom/zmatproductf.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/ts/interface/ts.c
vec/interface/dlregisvec.c
vec/interface/vector.c
vec/utils/vinv.c
4cd8913c15-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

PetscSection: propagate field names to global section

view names at View time, update outputs


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscdmplextypes.h
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/tests/ex33.c
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-False_parmetis.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-False_ptscotch.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-True_parmetis.out
/petsc/src/dm/impls/plex/tests/output/ex21_0_shell-True_ptscotch.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_0.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_1.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_10.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_12.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_13.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_14.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_15.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_16.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_17.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_18.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_19.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_2.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_3.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_4.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_5.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_6.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_7.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_8.out
/petsc/src/dm/impls/plex/tests/output/ex26f90_9.out
/petsc/src/dm/impls/plex/tests/output/ex27_quad_fm.out
/petsc/src/dm/impls/plex/tests/output/ex27_quad_pm.out
/petsc/src/dm/impls/plex/tests/output/ex27_tri_fm.out
/petsc/src/dm/impls/plex/tests/output/ex27_tri_pm.out
/petsc/src/dm/impls/plex/tests/output/ex47_0.out
/petsc/src/dm/impls/plex/tests/output/ex47_1.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0_perm.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0_perm.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t2_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t5_0.out
/petsc/src/dm/impls/plex/tests/output/ex98_0.out
/petsc/src/dm/impls/plex/tests/output/ex98f90_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1_1.out
/petsc/src/dm/impls/plex/tutorials/output/ex1f90_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1f90_1.out
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/interface/ftn-custom/zmatproductf.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmplexts.c
is/section/interface/section.c
is/tests/output/ex5_0.out
is/tests/output/ex5_1.out
656ddf1622-Jan-2024 Junchao Zhang <jczhang@anl.gov>

Vec: add Vec_Shift logging event


/petsc/doc/developers/style.rst
/petsc/doc/manual/about_this_manual.rst
/petsc/doc/manual/getting_started.rst
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscoptions.h
/petsc/src/binding/petsc4py/setup.cfg
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/arraynpy.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/tests/ex41.c
/petsc/src/dm/tests/ex9.c
/petsc/src/dm/tests/noflux_check.c
/petsc/src/dm/tests/output/ex41_1.out
/petsc/src/dm/tests/output/ex41_2.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/tests/output/noflux_check.out
/petsc/src/dm/tests/output/noflux_check_2.out
/petsc/src/dm/tests/output/noflux_check_4.out
/petsc/src/dm/tests/output/noflux_check_8.out
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/interface/ftn-custom/zmatproductf.c
/petsc/src/mat/interface/matproduct.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesut.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsmon.c
vec/interface/dlregisvec.c
vec/interface/vector.c
vec/utils/vinv.c
a0901b5a22-Jan-2024 Junchao Zhang <jczhang@anl.gov>

VecCUPM: fix some gpu time logging


/petsc/doc/developers/style.rst
/petsc/doc/manual/about_this_manual.rst
/petsc/doc/manual/getting_started.rst
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscoptions.h
/petsc/src/binding/petsc4py/setup.cfg
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/arraynpy.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/tests/ex41.c
/petsc/src/dm/tests/ex9.c
/petsc/src/dm/tests/noflux_check.c
/petsc/src/dm/tests/output/ex41_1.out
/petsc/src/dm/tests/output/ex41_2.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/tests/output/noflux_check.out
/petsc/src/dm/tests/output/noflux_check_2.out
/petsc/src/dm/tests/output/noflux_check_4.out
/petsc/src/dm/tests/output/noflux_check_8.out
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesut.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsmon.c
vec/impls/seq/cupm/vecseqcupm_impl.hpp
vec/impls/seq/kokkos/veckok.kokkos.cxx
vec/utils/vinv.c
213acdd322-Jan-2024 Pierre Jolivet <pierre@joliv.et>

Use PetscTryTypeMethod when possible


/petsc/src/dm/field/interface/dmfield.c
/petsc/src/dm/impls/plex/transform/interface/plextransform.c
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/mat/graphops/coarsen/coarsen.c
/petsc/src/mat/graphops/color/interface/matcoloring.c
/petsc/src/mat/graphops/partition/partition.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/draw/interface/draw.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/characteristic/interface/characteristic.c
is/ao/interface/ao.c
is/is/interface/index.c
is/section/interface/section.c
is/utils/isltog.c
a9cd3c1820-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/feature-fault-pc' into 'main'

Plex: Allow section reordering by default

See merge request petsc/petsc!7197


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/sectionimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscsection.h
/petsc/src/binding/petsc4py/setup.cfg
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/arraynpy.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_trimmed.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/tests/ex5.c
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0_perm.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0_perm.out
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/interface/itres.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/interface/matrix.c
/petsc/src/sys/fileio/mprint.c
/petsc/src/sys/info/verboseinfo.c
is/section/interface/section.c
3ec46b7b12-Jun-2023 Matthew G. Knepley <knepley@gmail.com>

Section: Add PetscSectionGetBlockStarts() and PetscSectionSetBlockStarts()


/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/sectionimpl.h
/petsc/include/petscsection.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_1_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_simplex_discontinuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_continuous_trimmed.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_full.out
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/output/ex1_2_tensor_discontinuous_trimmed.out
/petsc/src/mat/interface/matrix.c
is/section/interface/section.c
8063175f17-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

PetscSF: flag packing events as non-collective


/petsc/doc/manual/profiling.rst
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/sys/info/verboseinfo.c
/petsc/src/sys/logging/handler/impls/default/logdefault.c
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/tests/ex71.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tests/ex30.c
/petsc/src/ts/tests/output/ex30_0.out
/petsc/src/ts/tests/output/ex30_3d.out
/petsc/src/ts/tests/output/ex30_simple.out
/petsc/src/ts/tests/output/ex30_simple_hdf5.out
/petsc/src/ts/utils/dmplexlandau/plexland.c
is/sf/interface/dlregissf.c
f544128615-Jan-2024 Pierre Jolivet <pierre@joliv.et>

Docs: typo


/petsc/config/BuildSystem/config/packages/c2html.py
/petsc/doc/manual/about_this_manual.rst
/petsc/doc/manual/getting_started.rst
/petsc/include/petscoptions.h
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/tests/ex41.c
/petsc/src/dm/tests/ex9.c
/petsc/src/dm/tests/noflux_check.c
/petsc/src/dm/tests/output/ex41_1.out
/petsc/src/dm/tests/output/ex41_2.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-1.out
/petsc/src/dm/tests/output/ex9_composite_nest_l2g_nsize-2.out
/petsc/src/dm/tests/output/noflux_check.out
/petsc/src/dm/tests/output/noflux_check_2.out
/petsc/src/dm/tests/output/noflux_check_4.out
/petsc/src/dm/tests/output/noflux_check_8.out
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/interface/snesut.c
/petsc/src/ts/interface/tseig.c
/petsc/src/ts/interface/tsmon.c
vec/impls/seq/dvec2.c
vec/impls/seq/kokkos/veckok.kokkos.cxx
f6fd629614-Jan-2024 Pierre Jolivet <pierre@joliv.et>

Remove unused Fortran kernels


/petsc/include/petscsys.h
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/aijperm/aijperm.c
vec/impls/seq/bvec2.c
vec/impls/seq/ftn-kernels/makefile
49d85fc314-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


/petsc/doc/build_man_examples_links.py
/petsc/doc/developers/style.rst
/petsc/include/petsc/private/matimpl.h
/petsc/include/petscmath.h
/petsc/include/petscts.h
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/interface/dm.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/normal/normmh.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/tutorials/ex25.c
/petsc/src/sys/objects/inherit.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmts.c
is/is/tutorials/ex2f.F90
is/sf/impls/basic/sfpack.c
is/sf/interface/sf.c
vec/interface/rvector.c
735e9a4a13-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'stefanozampini/fix-docs' into 'release'

fix docs

See merge request petsc/petsc!7181


/petsc/doc/build_man_examples_links.py
/petsc/include/petscts.h
/petsc/src/dm/impls/network/network.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/normal/normmh.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/sys/objects/inherit.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/utils/dmts.c
is/is/tutorials/ex2f.F90
is/sf/impls/basic/sfpack.c
is/sf/interface/sf.c
vec/interface/rvector.c
bf86de3e13-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

VecNorm: resize NormIds to 4, add extra diagnostics


/petsc/include/petsc/private/vecimpl.h
vec/interface/dlregisvec.c
vec/interface/rvector.c
cd0b497e12-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

Vec: add missing collective checks for scalars

fix tests


/petsc/doc/changes/dev.rst
/petsc/src/dm/tests/ex2.c
/petsc/src/dm/tests/ex44.c
vec/interface/rvector.c
vec/utils/vinv.c
e98d5aa112-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2024-01-03/docs-c2html' into 'main'

Remove recursive build of c2html files; no longer uses classic makefiles

See merge request petsc/petsc!7167


/petsc/config/BuildSystem/config/setCompilers.py
/petsc/doc/build_c2html.py
/petsc/doc/build_c2html_file.py
/petsc/doc/build_classic_docs.py
/petsc/doc/conf.py
/petsc/doc/requirements.txt
/petsc/lib/petsc/conf/rules_doc.mk
/petsc/makefile
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkview.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/swarm/tests/ex6.c
/petsc/src/dm/impls/swarm/tests/ex7.c
/petsc/src/dm/impls/swarm/tests/ex9.c
/petsc/src/dm/impls/swarm/tutorials/ex1.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/tests/ex57.c
/petsc/src/ksp/ksp/tests/ex63.cxx
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex87.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_utils.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tutorials/ex4.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/bm/makefile
/petsc/src/sys/objects/ftn-custom/zversionf.c
/petsc/src/sys/utils/ftn-custom/zarchf.c
/petsc/src/ts/tests/ex30.c
/petsc/src/ts/tests/ex35.c
/petsc/src/ts/tutorials/ex50.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c
is/sf/impls/basic/sfpack.c
is/sf/interface/vscat.c
is/utils/hdf5/makefile
vec/interface/rvector.c
vec/tests/ex57.cxx
vec/tests/ex58.c
vec/tests/ex59.cxx
46233b4411-Jan-2024 Barry Smith <bsmith@mcs.anl.gov>

Use < instead of " for includes of PETSc include files

And Remove unneeded duplicate includes

Co-Authored-by: Jose Roman <jroman@dsic.upv.es>


/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/network/networkview.c
/petsc/src/dm/impls/swarm/tests/ex6.c
/petsc/src/dm/impls/swarm/tests/ex7.c
/petsc/src/dm/impls/swarm/tests/ex9.c
/petsc/src/dm/impls/swarm/tutorials/ex1.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/tests/ex57.c
/petsc/src/ksp/ksp/tests/ex63.cxx
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex87.c
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_utils.c
/petsc/src/mat/tutorials/ex4.c
/petsc/src/sys/objects/ftn-custom/zversionf.c
/petsc/src/sys/utils/ftn-custom/zarchf.c
/petsc/src/ts/tests/ex30.c
/petsc/src/ts/tests/ex35.c
/petsc/src/ts/tutorials/ex50.c
/petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c
is/sf/impls/basic/sfpack.c
is/sf/interface/vscat.c
vec/interface/rvector.c
vec/tests/ex57.cxx
vec/tests/ex58.c
vec/tests/ex59.cxx
24d9665909-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

PETSCSFPACK: remove redundant event logging

this was creating deadlocks with log_sync on!


/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/doc/changes/315.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/petsc.bib
/petsc/doc/requirements.txt
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscblaslapack.h
/petsc/include/petscdevice.h
/petsc/include/petscdevicetypes.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmplextransformtypes.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmstag.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscdualspace.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petsclogtypes.h
/petsc/include/petscmacros.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmath.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscspace.h
/petsc/include/petscstring.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/include/petscviewertypes.h
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/sys/classes/random/tests/ex3.c
/petsc/src/sys/utils/sortd.c
/petsc/src/sys/utils/sorti.c
is/sf/impls/basic/sfpack.c
511e624611-Jan-2024 Stefano Zampini <stefano.zampini@gmail.com>

minor: fix typos


/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/doc/changes/315.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/petsc.bib
/petsc/doc/requirements.txt
/petsc/include/petscao.h
/petsc/include/petscbag.h
/petsc/include/petscblaslapack.h
/petsc/include/petscdevice.h
/petsc/include/petscdevicetypes.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmda.h
/petsc/include/petscdmdatypes.h
/petsc/include/petscdmfield.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmlabel.h
/petsc/include/petscdmmoab.h
/petsc/include/petscdmplextransformtypes.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscdmstag.h
/petsc/include/petscdmswarm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdraw.h
/petsc/include/petscdrawtypes.h
/petsc/include/petscds.h
/petsc/include/petscdt.h
/petsc/include/petscdualspace.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscistypes.h
/petsc/include/petscksp.h
/petsc/include/petsclog.h
/petsc/include/petsclogtypes.h
/petsc/include/petscmacros.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscmath.h
/petsc/include/petscmatlab.h
/petsc/include/petscoptions.h
/petsc/include/petscpctypes.h
/petsc/include/petscsf.h
/petsc/include/petscsftypes.h
/petsc/include/petscsnes.h
/petsc/include/petscspace.h
/petsc/include/petscstring.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petsctaolinesearch.h
/petsc/include/petsctime.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscviewer.h
/petsc/include/petscviewertypes.h
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/mat/impls/aij/mpi/kokkos/mpiaijkok.kokkos.cxx
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold.out
/petsc/src/snes/tutorials/output/ex12_quad_hpddm_reuse_threshold_baij.out
/petsc/src/sys/classes/random/tests/ex3.c
/petsc/src/sys/utils/sortd.c
/petsc/src/sys/utils/sorti.c
is/is/tutorials/ex2f.F90
is/sf/impls/basic/sfpack.c
is/sf/interface/sf.c
vec/interface/rvector.c
0629556011-Jan-2024 Satish Balay <balay@mcs.anl.gov>

Merge branch 'knepley/fix-plex-lexi-order' into 'main'

Plex: Fix lexicographic closure ordering

See merge request petsc/petsc!7173


/petsc/.gitlab-ci.yml
/petsc/config/examples/arch-ci-linux-clang-ubsan.py
/petsc/doc/changes/315.rst
/petsc/doc/changes/dev.rst
/petsc/doc/manual/ksp.rst
/petsc/include/petsc/private/dmstagimpl.h
/petsc/share/petsc/suppressions/lsan
/petsc/share/petsc/suppressions/ubsan
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexceed.c
/petsc/src/dm/impls/plex/tutorials/ex8.c
/petsc/src/dm/impls/plex/tutorials/output/ex8_1d_q2.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_periodic.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_q1d.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1d.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_p0.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_p1d.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_q1.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_q1d.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q3.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_3d_q1.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_3d_q1_periodic.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_3d_q1_periodic_project.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_3d_q2_periodic.out
/petsc/src/dm/impls/stag/stag.c
/petsc/src/dm/impls/stag/stag1d.c
/petsc/src/dm/impls/stag/stag2d.c
/petsc/src/dm/impls/stag/stag3d.c
/petsc/src/dm/impls/stag/tests/ex53.c
/petsc/src/dm/impls/stag/tests/output/ex53_1.out
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/cupm/matseqdensecupm.hpp
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/dense/seq/dense.h
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/tests/ex197.c
is/section/interface/section.c
5f82726a08-Jan-2024 Matthew G. Knepley <knepley@gmail.com>

Plex: Discontinuous fields do not have unknowns on faces/edges
- Fix tensor ordering to allow discontinuous simplex fields


/petsc/config/BuildSystem/config/packages/libceed.py
/petsc/doc/petsc.bib
/petsc/include/petscdm.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/lagrange/tests/ex1.c
/petsc/src/dm/dt/dualspace/impls/sum/dualspacesum.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/tests/ex4.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexceed.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexorient.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/tests/ex42.c
/petsc/src/dm/impls/plex/transform/impls/refine/sbr/plexrefsbr.c
/petsc/src/dm/impls/plex/transform/interface/plextransform.c
/petsc/src/dm/impls/plex/tutorials/ex1.c
/petsc/src/dm/impls/plex/tutorials/ex11.c
/petsc/src/dm/impls/plex/tutorials/output/ex1_filter_0.out
/petsc/src/dm/impls/plex/tutorials/output/ex1_submesh_0.out
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmceed.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/sys/objects/options.c
is/section/interface/section.c
16cd844b05-Jan-2024 Pierre Jolivet <pierre@joliv.et>

Missing calls to PetscSafePointerPlusOffset()


/petsc/doc/changes/dev.rst
/petsc/doc/faq/index.rst
/petsc/include/petscerror.h
/petsc/include/petsctao.h
/petsc/lib/petsc/bin/maint/convertExamplesUtils.py
/petsc/lib/petsc/conf/rules_util.mk
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/TAO.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petsctao.pxi
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex62.c
/petsc/src/mat/tests/ex94.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/ts/tutorials/eimex/ct_vdp_imex.c
is/sf/impls/basic/sfbasic.c
is/sf/utils/sfutils.c
4c07347308-Jan-2024 Pierre Jolivet <pierre@joliv.et>

New "Extra comma in test harness rules" in checkbadSource


/petsc/lib/petsc/conf/rules_util.mk
/petsc/src/mat/tests/ex261.c
/petsc/src/sys/objects/device/tests/ex12.c
/petsc/src/sys/objects/device/tests/ex7.c
vec/tests/ex63.c
vec/tests/ex64.c

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