Remove unused/outdated headers

Serial PETSc was broken for cases with periodicity and for scalar solves but now fixed for both

incompressible: fix build with svls solver and gcc5

svls and petsc options

Bug fixed when probes requested

Bug fixed with probes and xyzts.dat

Merge pull request #12 from PHASTA/bg_compile_issue

Add qsuffix=cpp=f flag compile flag to fix IBM BG compilation issue.

Add qsuffix=cpp=f flag compile flag to fix IBM BG compilation issue.

It appears that the "-qsuffix=cpp=f" compile flag is needed on
phSolver/incompressible/filters.f to process the #ifdef HAVE_LESLI

Add qsuffix=cpp=f flag compile flag to fix IBM BG compilation issue.

It appears that the "-qsuffix=cpp=f" compile flag is needed on
phSolver/incompressible/filters.f to process the #ifdef HAVE_LESLIB
macro.

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compiles

it looks like a block of code was moved into the initEQS(...) fn but the variable declarations were left behind

try to fix compile errors

compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually

compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually works...same with other features that were moved to functions....somebody needs to follow this lead and do the same thing for compressible

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partial save of work towards cleanup when I realized I had uncommited stuff for LSPinning

Only tested on the 4 element hex but it runs with SyncIO too.

At long last, non-tet topology restored for Posix. Coming to a SyncIO version near you soon

stole genb*Posix from kyle and genb*SyncIO from master prior to Cameron's blend of posix and syncio...this commit is not wired up yet and simply has these files partially cleaned to make them easier

stole genb*Posix from kyle and genb*SyncIO from master prior to Cameron's blend of posix and syncio...this commit is not wired up yet and simply has these files partially cleaned to make them easier to merge Cam's phastaIO reads into

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oops...that merge missed a file that was not added to the branch properly

Merge branch 'icInviscid' This merge alllows both incompressible and compressible Euler flows. Also bring's Woolwine's work with small disturbances applied at inflows.

IC working inviscid

removed unused (and harmful) preprocessor flag

first cut at inviscid C and IC'

Level Set echoing of data into solver.inp had broken format. Also reverting the PETSc interface back to 3.6.x.

phsolver: deallocated fncorp in compressible and incompressible itrdrv

phsolver: deallocated wnorm in compressible and incompressible itrdrv

phsolver/common: entire file was commented out

compressible: set solver name before linking solver.inp