compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually

compiled and tested on phastaChefTests/incompressible...This case at least computes and writes the yphbar and did not crash but someone actually using this feature should test to be sure it actually works...same with other features that were moved to functions....somebody needs to follow this lead and do the same thing for compressible

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Only tested on the 4 element hex but it runs with SyncIO too.

At long last, non-tet topology restored for Posix. Coming to a SyncIO version near you soon

stole genb*Posix from kyle and genb*SyncIO from master prior to Cameron's blend of posix and syncio...this commit is not wired up yet and simply has these files partially cleaned to make them easier

stole genb*Posix from kyle and genb*SyncIO from master prior to Cameron's blend of posix and syncio...this commit is not wired up yet and simply has these files partially cleaned to make them easier to merge Cam's phastaIO reads into

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IC working inviscid

first cut at inviscid C and IC'

Level Set echoing of data into solver.inp had broken format. Also reverting the PETSc interface back to 3.6.x.

phsolver: deallocated fncorp in compressible and incompressible itrdrv

phsolver: deallocated wnorm in compressible and incompressible itrdrv

phsolver/common: entire file was commented out

streamio remove "extern" qualifiers so that globals get initialized

phasta.cc: rearrange headers to avoid symbol conflicts

merged Ben and my collision

phasta.cc calls a petsc function that changed argument list between 3.6.1 and Master. This has both so uncomment what you need

Complain if PETSc is built with the wrong size index type

... at least until we can fix this properly

Merge branch 'master' of github.com:PHASTA/phasta

updated phasta.cc for petsc master (may brake older versions). Also added a dump of index sets for the rank specified in rankdump (static to file).

some compilers are more picky about f90 than others

PETSc: remove PETSC_VIEWER_ASCII_INDEX format; fixes -log_summary

PETSc-3.6.x's PetscLogView does not understand PETSC_VIEWER_ASCII_INDEX,
thus skipping the printing of -log_summary. Ken says
PETSC

PETSc: remove PETSC_VIEWER_ASCII_INDEX format; fixes -log_summary

PETSc-3.6.x's PetscLogView does not understand PETSC_VIEWER_ASCII_INDEX,
thus skipping the printing of -log_summary. Ken says
PETSC_VIEWER_ASCII_INDEX is not important for PHASTA at this time. I
will fix PetscLogView for PETSc-3.7 to handle this case.

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a few more valgrind cleanups for the compressible code. This version runs duct cases with no errors

Should now compile for individual or combined IC solvers. Note flag changes for CMake. Some cleanup of old native GMRes solver for compressible flow

Extracts and prints communication info from ilwork array

Merge branch 'topic_remove_mpoint' into svls

Kitware says HAVE_CXX is depreciated
(and it breaks the build on intel/pgi)

improved d2wall computation and export of petsc options to stdout for improved provenance of petsc command line and .petsrc inputs