#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # libCEED documentation build configuration file, created by # sphinx-quickstart on Tue Jan 7 18:59:28 2020. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) import glob import shutil import sys import breathe import os import subprocess from sphinxcontrib import katex # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'altair.sphinxext.altairplot', 'breathe', 'hoverxref.extension', 'sphinx_panels', 'myst_parser', 'sphinx_rtd_theme', 'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest', 'sphinx.ext.ifconfig', 'sphinx.ext.intersphinx', 'sphinx.ext.githubpages', 'sphinxcontrib.katex', 'sphinxcontrib.mermaid', # still in beta; fails with latexpdf builder 'sphinx.ext.todo', 'sphinx.ext.viewcode', 'sphinxcontrib.bibtex', 'sphinxcontrib.rsvgconverter', ] # The following, if true, allows figures, tables and code-blocks to be # automatically numbered if they have a caption. numfig = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The master toctree document. master_doc = 'index' # General information about the project. project = 'libCEED' copyright = '2020, LLNL, University of Colorado, University of Illinois, University of Tennesee, and the authors' with open('../../../AUTHORS') as f: authorlist = f.readlines() author = ', '.join(authorlist) # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. with open('../../../ceed.pc.template') as f: pkgconf_version = 'unknown' for line in f: if line.startswith('Version:'): pkgconf_version = line.partition(': ')[2] break version = pkgconf_version # The full version, including alpha/beta/rc tags. release = pkgconf_version # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = "en" # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = [ 'examples/README.md', 'examples/ceed/README.md', 'examples/fluids/README.md', 'examples/nek/README.md', 'examples/petsc/README.md', 'examples/solid/README.md', ] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # sphinxcontrib-bibtex 2.0 requires listing all bibtex files here bibtex_bibfiles = [ 'references.bib', ] myst_enable_extensions = [ 'deflist', 'dollarmath', 'html_image', 'linkify', 'colon_fence', ] myst_heading_anchors = 2 myst_url_schemes = ["http", "https", "mailto"] # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ["css"] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # This is required for the alabaster theme # refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars html_sidebars = { '**': [ 'relations.html', # needs 'show_related': True theme option to display 'searchbox.html', ] } # hoverxref options hoverxref_auto_ref = True hoverxref_mathjax = True latex_macros = r""" \def \diff {\operatorname{d}\!} \def \tcolon {\!:\!} \def \trace {\operatorname{trace}} """ # Translate LaTeX macros to KaTeX and add to options for HTML builder katex_macros = katex.latex_defs_to_katex_macros(latex_macros) katex_options = 'macros: {' + katex_macros + '}' def katex_cdn(path): katex_gitcommit = '7c696bb7ac8995f177676d62be09ceefa37d66e3' return f'https://cdn.jsdelivr.net/gh/jedbrown/katex@{katex_gitcommit}/' + path katex_css_path = katex_cdn('dist/katex.min.css') katex_js_path = katex_cdn('dist/katex.min.js') katex_autorender_path = katex_cdn('dist/contrib/auto-render.min.js') # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'libCEEDdoc' # -- Options for LaTeX output --------------------------------------------- latex_engine = 'xelatex' latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # 'preamble': r""" \usepackage{bm} \usepackage{amscd} """ + latex_macros, # Latex figure (float) alignment # # 'figure_align': 'htbp', 'fontenc': r'\usepackage{mathspec}', 'fontpkg': r""" \setmainfont{TeX Gyre Pagella} \setmathfont{TeX Gyre Pagella Math} \setsansfont{DejaVu Sans} \setmonofont{DejaVu Sans Mono} """, } latex_logo = '../../img/ceed-full-name-logo.PNG' latexauthorslist = r' \and '.join(authorlist) # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'libCEED.tex', 'libCEED User Manual', latexauthorslist, 'howto'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'libceed', 'libCEED User Manual', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'libCEED', 'libCEED User Manual', latexauthorslist, 'libCEED', 'Efficient implementations of finite element operators.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = { 'python': ('https://docs.python.org/3', None), 'numpy': ('https://numpy.org/devdocs', None), } # -- Options for breathe -------------------------------------------------- sys.path.append(breathe.__path__) breathe_projects = {"libCEED": "../../../xml"} breathe_default_project = "libCEED" breathe_build_directory = "../build/breathe" breathe_domain_by_extension = {"c": "c", "h": "c", "cpp": "cpp", "hpp": "cpp"} # Run Doxygen if building on Read The Docs rootdir = os.path.join(os.path.dirname(__file__), os.pardir, os.pardir, os.pardir) if os.environ.get('READTHEDOCS'): subprocess.check_call(['doxygen', 'Doxyfile'], cwd=rootdir) def mkdir_p(path): try: os.makedirs(path) except FileExistsError: pass # Copy example documentation from source tree try: shutil.rmtree('examples') except FileNotFoundError: pass for filename in glob.glob(os.path.join( rootdir, 'examples/**/*.md'), recursive=True): destdir = os.path.dirname(os.path.relpath(filename, rootdir)) mkdir_p(destdir) shutil.copy2(filename, destdir) shutil.copy2(os.path.join(rootdir, 'README.md'), '.') for filename in glob.glob(os.path.join( rootdir, 'examples/**/*.csv'), recursive=True): destdir = os.path.dirname(os.path.relpath(filename, rootdir)) mkdir_p(destdir) shutil.copy2(filename, destdir)