# Configuration file for the Sphinx documentation builder. # # For the full list of built-in configuration values, see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import re import os import shutil import sys import typing import datetime import importlib import sphobjinv import functools import pylit from sphinx.ext.napoleon.docstring import NumpyDocstring sys.path.insert(0, os.path.abspath('.')) _today = datetime.datetime.now() # -- Project information ----------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information package = 'petsc4py' docdir = os.path.abspath(os.path.dirname(__file__)) topdir = os.path.abspath(os.path.join(docdir, *[os.path.pardir]*2)) def pkg_version(): with open(os.path.join(topdir, 'src', package, '__init__.py')) as f: m = re.search(r"__version__\s*=\s*'(.*)'", f.read()) return m.groups()[0] def get_doc_branch(): release = 1 if topdir.endswith(os.path.join(os.path.sep, 'src', 'binding', package)): rootdir = os.path.abspath(os.path.join(topdir, *[os.path.pardir]*3)) rootname = package.replace('4py', '') version_h = os.path.join(rootdir, 'include', f'{rootname}version.h') if os.path.exists(version_h) and os.path.isfile(version_h): release_macro = f'{rootname.upper()}_VERSION_RELEASE' version_re = re.compile(rf"#define\s+{release_macro}\s+([-]*\d+)") with open(version_h, 'r') as f: release = int(version_re.search(f.read()).groups()[0]) return 'release' if release else 'main' project = 'PETSc for Python' author = 'Lisandro Dalcin' copyright = f'{_today.year}, {author}' release = pkg_version() version = release.rsplit('.', 1)[0] # -- General configuration --------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.autosummary', 'sphinx.ext.intersphinx', 'sphinx.ext.napoleon', 'sphinx.ext.extlinks', ] templates_path = ['_templates'] exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] needs_sphinx = '5.0.0' default_role = 'any' pygments_style = 'tango' nitpicky = True nitpick_ignore = [ ('envvar', 'NUMPY_INCLUDE'), ('py:class', 'ndarray'), # FIXME ('py:class', 'typing_extensions.Self'), ] nitpick_ignore_regex = [ (r'c:.*', r'MPI_.*'), (r'c:.*', r'Petsc.*'), (r'envvar', r'(LD_LIBRARY_)?PATH'), (r'envvar', r'(MPICH|OMPI|MPIEXEC)_.*'), ] toc_object_entries = False toc_object_entries_show_parents = 'hide' # python_use_unqualified_type_names = True autodoc_class_signature = 'separated' autodoc_typehints = 'description' autodoc_typehints_format = 'short' autodoc_mock_imports = [] autodoc_type_aliases = {} autosummary_context = { 'synopsis': {}, 'autotype': {}, } # This can be customized www = 'https://gitlab.com/petsc/petsc/-/tree/main' extlinks = {'sources': (f'{www}/src/binding/petsc4py/src/%s','')} napoleon_preprocess_types = True try: import sphinx_rtd_theme if 'sphinx_rtd_theme' not in extensions: extensions.append('sphinx_rtd_theme') except ImportError: sphinx_rtd_theme = None intersphinx_mapping = { 'python': ('https://docs.python.org/3/', None), 'numpy': ('https://numpy.org/doc/stable/', None), 'numpydoc': ('https://numpydoc.readthedocs.io/en/latest/', None), 'mpi4py': ('https://mpi4py.readthedocs.io/en/stable/', None), 'pyopencl': ('https://documen.tician.de/pyopencl/', None), 'dlpack': ('https://dmlc.github.io/dlpack/latest/', None), 'petsc': ('https://petsc.org/release/', None), } def _mangle_petsc_intersphinx(): """Preprocess the keys in PETSc's intersphinx inventory. PETSc have intersphinx keys of the form: manualpages/Vec/VecShift instead of: petsc.VecShift This function downloads their object inventory and strips the leading path elements so that references to PETSc names actually resolve.""" website = intersphinx_mapping['petsc'][0].partition('/release/')[0] branch = get_doc_branch() base_doc_url = f"{website}/{branch}/" running_on_ci = False # os.environ.get("CI", "false") == "true" if running_on_ci: local_petsc_docs = "path/to/petsc/documentation" # TODO local_inventory_filename = os.path.join(local_petsc_docs, "objects.inv") inventory = sphobjinv.Inventory(local_inventory_filename) else: inventory = sphobjinv.Inventory(url=f"{base_doc_url}objects.inv") for obj in inventory.objects: if obj.name.startswith("manualpages"): obj.name = "petsc." + "/".join(obj.name.split("/")[2:]) obj.role = "class" obj.domain = "py" new_inventory_filename = "petsc_objects.inv" sphobjinv.writebytes( new_inventory_filename, sphobjinv.compress(inventory.data_file(contract=True)) ) intersphinx_mapping['petsc'] = (base_doc_url, new_inventory_filename) _mangle_petsc_intersphinx() def _setup_mpi4py_typing(): pkg = type(sys)('mpi4py') mod = type(sys)('mpi4py.MPI') mod.__package__ = pkg.__name__ sys.modules[pkg.__name__] = pkg sys.modules[mod.__name__] = mod for clsname in ( 'Intracomm', 'Datatype', 'Op', ): cls = type(clsname, (), {}) cls.__module__ = mod.__name__ setattr(mod, clsname, cls) def _patch_domain_python(): from sphinx.domains.python import PythonDomain PythonDomain.object_types['data'].roles += ('class',) def _setup_autodoc(app): from sphinx.ext import autodoc from sphinx.util import inspect from sphinx.util import typing # def stringify_annotation(annotation, mode='fully-qualified-except-typing'): qualname = getattr(annotation, '__qualname__', '') module = getattr(annotation, '__module__', '') args = getattr(annotation, '__args__', None) if module == 'builtins' and qualname and args is not None: args = ', '.join(stringify_annotation(a, mode) for a in args) return f'{qualname}[{args}]' return stringify_annotation_orig(annotation, mode) try: stringify_annotation_orig = typing.stringify_annotation inspect.stringify_annotation = stringify_annotation typing.stringify_annotation = stringify_annotation autodoc.stringify_annotation = stringify_annotation autodoc.typehints.stringify_annotation = stringify_annotation except AttributeError: stringify_annotation_orig = typing.stringify inspect.stringify_annotation = stringify_annotation typing.stringify = stringify_annotation autodoc.stringify_typehint = stringify_annotation # class ClassDocumenterMixin: def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) if self.config.autodoc_class_signature == 'separated': members = self.options.members special_members = self.options.special_members if special_members is not None: for name in ('__new__', '__init__'): if name in members: members.remove(name) if name in special_members: special_members.remove(name) class ClassDocumenter( ClassDocumenterMixin, autodoc.ClassDocumenter, ): pass class ExceptionDocumenter( ClassDocumenterMixin, autodoc.ExceptionDocumenter, ): pass app.add_autodocumenter(ClassDocumenter, override=True) app.add_autodocumenter(ExceptionDocumenter, override=True) def _monkey_patch_returns(): """Rewrite the role of names in "Returns" sections. This is needed because Napoleon uses ``:class:`` for the return types and this does not work with type aliases like ``ArrayScalar``. To resolve this we swap ``:class:`` for ``:any:``. """ _parse_returns_section = \ NumpyDocstring._parse_returns_section @functools.wraps(NumpyDocstring._parse_returns_section) def wrapper(*args, **kwargs): out = _parse_returns_section(*args, **kwargs) return [line.replace(":class:", ":any:") for line in out] NumpyDocstring._parse_returns_section = wrapper def _monkey_patch_see_also(): """Rewrite the role of names in "see also" sections. Napoleon uses :obj: for all names found in "see also" sections but we need :all: so that references to labels work.""" _parse_numpydoc_see_also_section = \ NumpyDocstring._parse_numpydoc_see_also_section @functools.wraps(NumpyDocstring._parse_numpydoc_see_also_section) def wrapper(*args, **kwargs): out = _parse_numpydoc_see_also_section(*args, **kwargs) return [line.replace(":obj:", ":any:") for line in out] NumpyDocstring._parse_numpydoc_see_also_section = wrapper def _apply_monkey_patches(): """Modify Napoleon types after parsing to make references work.""" _monkey_patch_returns() _monkey_patch_see_also() _apply_monkey_patches() def _process_demos(*demos): # Convert demo .py files to rst. Also copy the .py file so it can be # linked from the demo rst file. try: os.mkdir("demo") except FileExistsError: pass for demo in demos: demo_dir = os.path.join("demo", os.path.dirname(demo)) demo_src = os.path.join(os.pardir, os.pardir, "demo", demo) try: os.mkdir(demo_dir) except FileExistsError: pass with open(demo_src, "r") as infile: with open(os.path.join( os.path.join("demo", os.path.splitext(demo)[0] + ".rst")), "w" ) as outfile: converter = pylit.Code2Text(infile) outfile.write(str(converter)) demo_copy_name = os.path.join(demo_dir, os.path.basename(demo)) shutil.copyfile(demo_src, demo_copy_name) html_static_path.append(demo_copy_name) with open(os.path.join("demo", "demo.rst"), "w") as demofile: demofile.write(""" petsc4py demos ============== .. toctree:: """) for demo in demos: demofile.write(" " + os.path.splitext(demo)[0] + "\n") demofile.write("\n") html_static_path=[] _process_demos( "poisson2d/poisson2d.py" ) def setup(app): _setup_mpi4py_typing() _patch_domain_python() _monkey_patch_returns() _monkey_patch_see_also() _setup_autodoc(app) try: from petsc4py import PETSc except ImportError: autodoc_mock_imports.append('PETSc') return del PETSc.DA # FIXME sys_dwb = sys.dont_write_bytecode sys.dont_write_bytecode = True import apidoc sys.dont_write_bytecode = sys_dwb name = PETSc.__name__ here = os.path.abspath(os.path.dirname(__file__)) outdir = os.path.join(here, apidoc.OUTDIR) source = os.path.join(outdir, f'{name}.py') getmtime = os.path.getmtime generate = ( not os.path.exists(source) or getmtime(source) < getmtime(PETSc.__file__) or getmtime(source) < getmtime(apidoc.__file__) ) if generate: apidoc.generate(source) module = apidoc.load_module(source) apidoc.replace_module(module) modules = [ 'petsc4py', ] typing_overload = typing.overload typing.overload = lambda arg: arg for name in modules: mod = importlib.import_module(name) ann = apidoc.load_module(f'{mod.__file__}i', name) apidoc.annotate(mod, ann) typing.overload = typing_overload from petsc4py import typing as tp for attr in tp.__all__: autodoc_type_aliases[attr] = f'~petsc4py.typing.{attr}' # -- Options for HTML output ------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'pydata_sphinx_theme' # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = f'{package}-man' # -- Options for LaTeX output --------------------------------------------- # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', f'{package}.tex', project, author, 'howto'), ] latex_elements = { 'papersize': 'a4', } # -- Options for manual page output --------------------------------------- # (source start file, name, description, authors, manual section). man_pages = [ ('index', package, project, [author], 3) ] # -- Options for Texinfo output ------------------------------------------- # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', package, project, author, package, f'{project}.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Output file base name for ePub builder. epub_basename = package