#include /*I "petscpartitioner.h" I*/ #if defined(PETSC_HAVE_PTSCOTCH) EXTERN_C_BEGIN #include EXTERN_C_END #endif PetscBool PTScotchPartitionerCite = PETSC_FALSE; const char PTScotchPartitionerCitation[] = "@article{PTSCOTCH,\n" " author = {C. Chevalier and F. Pellegrini},\n" " title = {{PT-SCOTCH}: a tool for efficient parallel graph ordering},\n" " journal = {Parallel Computing},\n" " volume = {34},\n" " number = {6},\n" " pages = {318--331},\n" " year = {2008},\n" " doi = {https://doi.org/10.1016/j.parco.2007.12.001}\n" "}\n"; typedef struct { MPI_Comm pcomm; PetscInt strategy; PetscReal imbalance; } PetscPartitioner_PTScotch; #if defined(PETSC_HAVE_PTSCOTCH) #define CHKERRPTSCOTCH(ierr) do { if (ierr) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error calling PT-Scotch library"); } while (0) static int PTScotch_Strategy(PetscInt strategy) { switch (strategy) { case 0: return SCOTCH_STRATDEFAULT; case 1: return SCOTCH_STRATQUALITY; case 2: return SCOTCH_STRATSPEED; case 3: return SCOTCH_STRATBALANCE; case 4: return SCOTCH_STRATSAFETY; case 5: return SCOTCH_STRATSCALABILITY; case 6: return SCOTCH_STRATRECURSIVE; case 7: return SCOTCH_STRATREMAP; default: return SCOTCH_STRATDEFAULT; } } static PetscErrorCode PTScotch_PartGraph_Seq(SCOTCH_Num strategy, double imbalance, SCOTCH_Num n, SCOTCH_Num xadj[], SCOTCH_Num adjncy[], SCOTCH_Num vtxwgt[], SCOTCH_Num adjwgt[], SCOTCH_Num nparts, SCOTCH_Num tpart[], SCOTCH_Num part[]) { SCOTCH_Arch archdat; SCOTCH_Graph grafdat; SCOTCH_Strat stradat; SCOTCH_Num vertnbr = n; SCOTCH_Num edgenbr = xadj[n]; SCOTCH_Num* velotab = vtxwgt; SCOTCH_Num* edlotab = adjwgt; SCOTCH_Num flagval = strategy; double kbalval = imbalance; PetscErrorCode ierr; PetscFunctionBegin; { PetscBool flg = PETSC_TRUE; ierr = PetscOptionsDeprecatedNoObject("-petscpartititoner_ptscotch_vertex_weight",NULL,"3.13","Use -petscpartitioner_use_vertex_weights");CHKERRQ(ierr); ierr = PetscOptionsGetBool(NULL, NULL, "-petscpartititoner_ptscotch_vertex_weight", &flg, NULL);CHKERRQ(ierr); if (!flg) velotab = NULL; } ierr = SCOTCH_graphInit(&grafdat);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_graphBuild(&grafdat, 0, vertnbr, xadj, xadj + 1, velotab, NULL, edgenbr, adjncy, edlotab);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_stratInit(&stradat);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_stratGraphMapBuild(&stradat, flagval, nparts, kbalval);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_archInit(&archdat);CHKERRPTSCOTCH(ierr); if (tpart) { ierr = SCOTCH_archCmpltw(&archdat, nparts, tpart);CHKERRPTSCOTCH(ierr); } else { ierr = SCOTCH_archCmplt(&archdat, nparts);CHKERRPTSCOTCH(ierr); } ierr = SCOTCH_graphMap(&grafdat, &archdat, &stradat, part);CHKERRPTSCOTCH(ierr); SCOTCH_archExit(&archdat); SCOTCH_stratExit(&stradat); SCOTCH_graphExit(&grafdat); PetscFunctionReturn(0); } static PetscErrorCode PTScotch_PartGraph_MPI(SCOTCH_Num strategy, double imbalance, SCOTCH_Num vtxdist[], SCOTCH_Num xadj[], SCOTCH_Num adjncy[], SCOTCH_Num vtxwgt[], SCOTCH_Num adjwgt[], SCOTCH_Num nparts, SCOTCH_Num tpart[], SCOTCH_Num part[], MPI_Comm comm) { PetscMPIInt procglbnbr; PetscMPIInt proclocnum; SCOTCH_Arch archdat; SCOTCH_Dgraph grafdat; SCOTCH_Dmapping mappdat; SCOTCH_Strat stradat; SCOTCH_Num vertlocnbr; SCOTCH_Num edgelocnbr; SCOTCH_Num* veloloctab = vtxwgt; SCOTCH_Num* edloloctab = adjwgt; SCOTCH_Num flagval = strategy; double kbalval = imbalance; PetscErrorCode ierr; PetscFunctionBegin; { PetscBool flg = PETSC_TRUE; ierr = PetscOptionsDeprecatedNoObject("-petscpartititoner_ptscotch_vertex_weight",NULL,"3.13","Use -petscpartitioner_use_vertex_weights");CHKERRQ(ierr); ierr = PetscOptionsGetBool(NULL, NULL, "-petscpartititoner_ptscotch_vertex_weight", &flg, NULL);CHKERRQ(ierr); if (!flg) veloloctab = NULL; } ierr = MPI_Comm_size(comm, &procglbnbr);CHKERRMPI(ierr); ierr = MPI_Comm_rank(comm, &proclocnum);CHKERRMPI(ierr); vertlocnbr = vtxdist[proclocnum + 1] - vtxdist[proclocnum]; edgelocnbr = xadj[vertlocnbr]; ierr = SCOTCH_dgraphInit(&grafdat, comm);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_dgraphBuild(&grafdat, 0, vertlocnbr, vertlocnbr, xadj, xadj + 1, veloloctab, NULL, edgelocnbr, edgelocnbr, adjncy, NULL, edloloctab);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_stratInit(&stradat);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_stratDgraphMapBuild(&stradat, flagval, procglbnbr, nparts, kbalval);CHKERRQ(ierr); ierr = SCOTCH_archInit(&archdat);CHKERRPTSCOTCH(ierr); if (tpart) { /* target partition weights */ ierr = SCOTCH_archCmpltw(&archdat, nparts, tpart);CHKERRPTSCOTCH(ierr); } else { ierr = SCOTCH_archCmplt(&archdat, nparts);CHKERRPTSCOTCH(ierr); } ierr = SCOTCH_dgraphMapInit(&grafdat, &mappdat, &archdat, part);CHKERRPTSCOTCH(ierr); ierr = SCOTCH_dgraphMapCompute(&grafdat, &mappdat, &stradat);CHKERRPTSCOTCH(ierr); SCOTCH_dgraphMapExit(&grafdat, &mappdat); SCOTCH_archExit(&archdat); SCOTCH_stratExit(&stradat); SCOTCH_dgraphExit(&grafdat); PetscFunctionReturn(0); } #endif /* PETSC_HAVE_PTSCOTCH */ static const char *const PTScotchStrategyList[] = { "DEFAULT", "QUALITY", "SPEED", "BALANCE", "SAFETY", "SCALABILITY", "RECURSIVE", "REMAP" }; static PetscErrorCode PetscPartitionerDestroy_PTScotch(PetscPartitioner part) { PetscPartitioner_PTScotch *p = (PetscPartitioner_PTScotch *) part->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = MPI_Comm_free(&p->pcomm);CHKERRMPI(ierr); ierr = PetscFree(part->data);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscPartitionerView_PTScotch_ASCII(PetscPartitioner part, PetscViewer viewer) { PetscPartitioner_PTScotch *p = (PetscPartitioner_PTScotch *) part->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"using partitioning strategy %s\n",PTScotchStrategyList[p->strategy]);CHKERRQ(ierr); ierr = PetscViewerASCIIPrintf(viewer,"using load imbalance ratio %g\n",(double)p->imbalance);CHKERRQ(ierr); ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscPartitionerView_PTScotch(PetscPartitioner part, PetscViewer viewer) { PetscBool iascii; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(part, PETSCPARTITIONER_CLASSID, 1); PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); ierr = PetscObjectTypeCompare((PetscObject) viewer, PETSCVIEWERASCII, &iascii);CHKERRQ(ierr); if (iascii) {ierr = PetscPartitionerView_PTScotch_ASCII(part, viewer);CHKERRQ(ierr);} PetscFunctionReturn(0); } static PetscErrorCode PetscPartitionerSetFromOptions_PTScotch(PetscOptionItems *PetscOptionsObject, PetscPartitioner part) { PetscPartitioner_PTScotch *p = (PetscPartitioner_PTScotch *) part->data; const char *const *slist = PTScotchStrategyList; PetscInt nlist = (PetscInt)(sizeof(PTScotchStrategyList)/sizeof(PTScotchStrategyList[0])); PetscBool flag; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscOptionsHead(PetscOptionsObject, "PetscPartitioner PTScotch Options");CHKERRQ(ierr); ierr = PetscOptionsEList("-petscpartitioner_ptscotch_strategy","Partitioning strategy","",slist,nlist,slist[p->strategy],&p->strategy,&flag);CHKERRQ(ierr); ierr = PetscOptionsReal("-petscpartitioner_ptscotch_imbalance","Load imbalance ratio","",p->imbalance,&p->imbalance,&flag);CHKERRQ(ierr); ierr = PetscOptionsTail();CHKERRQ(ierr); PetscFunctionReturn(0); } static PetscErrorCode PetscPartitionerPartition_PTScotch(PetscPartitioner part, PetscInt nparts, PetscInt numVertices, PetscInt start[], PetscInt adjacency[], PetscSection vertSection, PetscSection targetSection, PetscSection partSection, IS *partition) { #if defined(PETSC_HAVE_PTSCOTCH) MPI_Comm comm; PetscInt nvtxs = numVertices; /* The number of vertices in full graph */ PetscInt *vtxdist; /* Distribution of vertices across processes */ PetscInt *xadj = start; /* Start of edge list for each vertex */ PetscInt *adjncy = adjacency; /* Edge lists for all vertices */ PetscInt *vwgt = NULL; /* Vertex weights */ PetscInt *adjwgt = NULL; /* Edge weights */ PetscInt v, i, *assignment, *points; PetscMPIInt size, rank, p; PetscBool hasempty = PETSC_FALSE; PetscInt *tpwgts = NULL; PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscObjectGetComm((PetscObject)part,&comm);CHKERRQ(ierr); ierr = MPI_Comm_size(comm, &size);CHKERRMPI(ierr); ierr = MPI_Comm_rank(comm, &rank);CHKERRMPI(ierr); ierr = PetscMalloc2(size+1,&vtxdist,PetscMax(nvtxs,1),&assignment);CHKERRQ(ierr); /* Calculate vertex distribution */ vtxdist[0] = 0; ierr = MPI_Allgather(&nvtxs, 1, MPIU_INT, &vtxdist[1], 1, MPIU_INT, comm);CHKERRMPI(ierr); for (p = 2; p <= size; ++p) { hasempty = (PetscBool)(hasempty || !vtxdist[p-1] || !vtxdist[p]); vtxdist[p] += vtxdist[p-1]; } /* null graph */ if (vtxdist[size] == 0) { ierr = PetscFree2(vtxdist, assignment);CHKERRQ(ierr); ierr = ISCreateGeneral(comm, 0, NULL, PETSC_OWN_POINTER, partition);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Calculate vertex weights */ if (vertSection) { ierr = PetscMalloc1(nvtxs,&vwgt);CHKERRQ(ierr); for (v = 0; v < nvtxs; ++v) { ierr = PetscSectionGetDof(vertSection, v, &vwgt[v]);CHKERRQ(ierr); } } /* Calculate partition weights */ if (targetSection) { PetscInt sumw; ierr = PetscCalloc1(nparts,&tpwgts);CHKERRQ(ierr); for (p = 0, sumw = 0; p < nparts; ++p) { ierr = PetscSectionGetDof(targetSection,p,&tpwgts[p]);CHKERRQ(ierr); sumw += tpwgts[p]; } if (!sumw) {ierr = PetscFree(tpwgts);CHKERRQ(ierr);} } { PetscPartitioner_PTScotch *pts = (PetscPartitioner_PTScotch *) part->data; int strat = PTScotch_Strategy(pts->strategy); double imbal = (double)pts->imbalance; for (p = 0; !vtxdist[p+1] && p < size; ++p); if (vtxdist[p+1] == vtxdist[size]) { if (rank == p) { ierr = PTScotch_PartGraph_Seq(strat, imbal, nvtxs, xadj, adjncy, vwgt, adjwgt, nparts, tpwgts, assignment);CHKERRQ(ierr); } } else { MPI_Comm pcomm = pts->pcomm; if (hasempty) { PetscInt cnt; ierr = MPI_Comm_split(pts->pcomm,!!nvtxs,rank,&pcomm);CHKERRMPI(ierr); for (p=0,cnt=0;pnoGraph = PETSC_FALSE; part->ops->view = PetscPartitionerView_PTScotch; part->ops->destroy = PetscPartitionerDestroy_PTScotch; part->ops->partition = PetscPartitionerPartition_PTScotch; part->ops->setfromoptions = PetscPartitionerSetFromOptions_PTScotch; PetscFunctionReturn(0); } /*MC PETSCPARTITIONERPTSCOTCH = "ptscotch" - A PetscPartitioner object using the PT-Scotch library Level: intermediate Options Database Keys: + -petscpartitioner_ptscotch_strategy - PT-Scotch strategy. Choose one of default quality speed balance safety scalability recursive remap - -petscpartitioner_ptscotch_imbalance - Load imbalance ratio Notes: when the graph is on a single process, this partitioner actually uses Scotch and not PT-Scotch .seealso: PetscPartitionerType, PetscPartitionerCreate(), PetscPartitionerSetType() M*/ PETSC_EXTERN PetscErrorCode PetscPartitionerCreate_PTScotch(PetscPartitioner part) { PetscPartitioner_PTScotch *p; PetscErrorCode ierr; PetscFunctionBegin; PetscValidHeaderSpecific(part, PETSCPARTITIONER_CLASSID, 1); ierr = PetscNewLog(part, &p);CHKERRQ(ierr); part->data = p; ierr = MPI_Comm_dup(PetscObjectComm((PetscObject)part),&p->pcomm);CHKERRMPI(ierr); p->strategy = 0; p->imbalance = 0.01; ierr = PetscPartitionerInitialize_PTScotch(part);CHKERRQ(ierr); ierr = PetscCitationsRegister(PTScotchPartitionerCitation, &PTScotchPartitionerCite);CHKERRQ(ierr); PetscFunctionReturn(0); }