#include #include <../src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp> #include #include <../src/ksp/pc/impls/vpbjacobi/vpbjacobi.h> /* A class that manages helper arrays assisting parallel PCApply() with Kokkos */ struct PC_VPBJacobi_Kokkos { /* Cache the old sizes to check if we need realloc */ PetscInt n; /* number of rows of the local matrix */ PetscInt nblocks; /* number of point blocks */ PetscInt nsize; /* sum of sizes of the point blocks */ /* Helper arrays that are pre-computed on host and then copied to device. bs: [nblocks+1], "csr" version of bsizes[] bs2: [nblocks+1], "csr" version of squares of bsizes[] matIdx: [n], row i of the local matrix belongs to the matIdx_d[i] block */ PetscIntKokkosDualView bs_dual, bs2_dual, matIdx_dual; PetscScalarKokkosDualView diag_dual; PC_VPBJacobi_Kokkos(PetscInt n, PetscInt nblocks, PetscInt nsize, const PetscInt *bsizes, MatScalar *diag_ptr_h) : n(n), nblocks(nblocks), nsize(nsize), bs_dual("bs_dual", nblocks + 1), bs2_dual("bs2_dual", nblocks + 1), matIdx_dual("matIdx_dual", n) { PetscScalarKokkosViewHost diag_h(diag_ptr_h, nsize); auto diag_d = Kokkos::create_mirror_view(DefaultMemorySpace(), diag_h); diag_dual = PetscScalarKokkosDualView(diag_d, diag_h); PetscCallVoid(UpdateOffsetsOnDevice(bsizes, diag_ptr_h)); } PetscErrorCode UpdateOffsetsOnDevice(const PetscInt *bsizes, MatScalar *diag_ptr_h) { PetscFunctionBegin; PetscCheck(diag_dual.view_host().data() == diag_ptr_h, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Host pointer has changed since last call"); PetscCall(ComputeOffsetsOnHost(bsizes)); PetscCallCXX(bs_dual.modify_host()); PetscCallCXX(bs2_dual.modify_host()); PetscCallCXX(matIdx_dual.modify_host()); PetscCallCXX(diag_dual.modify_host()); PetscCallCXX(bs_dual.sync_device()); PetscCallCXX(bs2_dual.sync_device()); PetscCallCXX(matIdx_dual.sync_device()); PetscCallCXX(diag_dual.sync_device()); PetscCall(PetscLogCpuToGpu(sizeof(PetscInt) * (2 * nblocks + 2 + n) + sizeof(MatScalar) * nsize)); PetscFunctionReturn(0); } private: PetscErrorCode ComputeOffsetsOnHost(const PetscInt *bsizes) { PetscInt *bs_h = bs_dual.view_host().data(); PetscInt *bs2_h = bs2_dual.view_host().data(); PetscInt *matIdx_h = matIdx_dual.view_host().data(); PetscFunctionBegin; bs_h[0] = bs2_h[0] = 0; for (PetscInt i = 0; i < nblocks; i++) { bs_h[i + 1] = bs_h[i] + bsizes[i]; bs2_h[i + 1] = bs2_h[i] + bsizes[i] * bsizes[i]; for (PetscInt j = 0; j < bsizes[i]; j++) matIdx_h[bs_h[i] + j] = i; } PetscFunctionReturn(0); } }; static PetscErrorCode PCApply_VPBJacobi_Kokkos(PC pc, Vec x, Vec y) { PC_VPBJacobi *jac = (PC_VPBJacobi *)pc->data; PC_VPBJacobi_Kokkos *pckok = static_cast(jac->spptr); ConstPetscScalarKokkosView xv; PetscScalarKokkosView yv; PetscScalarKokkosView diag = pckok->diag_dual.view_device(); PetscIntKokkosView bs = pckok->bs_dual.view_device(); PetscIntKokkosView bs2 = pckok->bs2_dual.view_device(); PetscIntKokkosView matIdx = pckok->matIdx_dual.view_device(); PetscFunctionBegin; PetscCall(PetscLogGpuTimeBegin()); VecErrorIfNotKokkos(x); VecErrorIfNotKokkos(y); PetscCall(VecGetKokkosView(x, &xv)); PetscCall(VecGetKokkosViewWrite(y, &yv)); PetscCallCXX(Kokkos::parallel_for( "PCApply_VPBJacobi_Kokkos", pckok->n, KOKKOS_LAMBDA(PetscInt row) { const PetscScalar *Ap, *xp; PetscScalar *yp; PetscInt i, j, k, m; k = matIdx(row); /* k-th block/matrix */ m = bs(k + 1) - bs(k); /* block size of the k-th block */ i = row - bs(k); /* i-th row of the block */ Ap = &diag(bs2(k) + i); /* Ap points to the first entry of i-th row */ xp = &xv(bs(k)); yp = &yv(bs(k)); yp[i] = 0.0; for (j = 0; j < m; j++) { yp[i] += Ap[0] * xp[j]; Ap += m; } })); PetscCall(VecRestoreKokkosView(x, &xv)); PetscCall(VecRestoreKokkosViewWrite(y, &yv)); PetscCall(PetscLogGpuFlops(pckok->nsize * 2)); /* FMA on entries in all blocks */ PetscCall(PetscLogGpuTimeEnd()); PetscFunctionReturn(0); } static PetscErrorCode PCDestroy_VPBJacobi_Kokkos(PC pc) { PC_VPBJacobi *jac = (PC_VPBJacobi *)pc->data; PetscFunctionBegin; PetscCallCXX(delete static_cast(jac->spptr)); PetscCall(PCDestroy_VPBJacobi(pc)); PetscFunctionReturn(0); } PETSC_INTERN PetscErrorCode PCSetUp_VPBJacobi_Kokkos(PC pc) { PC_VPBJacobi *jac = (PC_VPBJacobi *)pc->data; PC_VPBJacobi_Kokkos *pckok = static_cast(jac->spptr); PetscInt i, n, nblocks, nsize = 0; const PetscInt *bsizes; PetscFunctionBegin; PetscCall(PCSetUp_VPBJacobi_Host(pc)); /* Compute the inverse on host now. Might worth doing it on device directly */ PetscCall(MatGetVariableBlockSizes(pc->pmat, &nblocks, &bsizes)); for (i = 0; i < nblocks; i++) nsize += bsizes[i] * bsizes[i]; PetscCall(MatGetLocalSize(pc->pmat, &n, NULL)); /* If one calls MatSetVariableBlockSizes() multiple times and sizes have been changed (is it allowed?), we delete the old and rebuild anyway */ if (pckok && (pckok->n != n || pckok->nblocks != nblocks || pckok->nsize != nsize)) { PetscCallCXX(delete pckok); pckok = nullptr; } if (!pckok) { /* allocate the struct along with the helper arrays from the scatch */ PetscCallCXX(jac->spptr = new PC_VPBJacobi_Kokkos(n, nblocks, nsize, bsizes, jac->diag)); } else { /* update the value only */ PetscCall(pckok->UpdateOffsetsOnDevice(bsizes, jac->diag)); } pc->ops->apply = PCApply_VPBJacobi_Kokkos; pc->ops->destroy = PCDestroy_VPBJacobi_Kokkos; PetscFunctionReturn(0); }