/*$Id: mmbaij.c,v 1.46 2001/09/25 00:31:36 balay Exp $*/ /* Support for the parallel BAIJ matrix vector multiply */ #include "src/mat/impls/baij/mpi/mpibaij.h" #include "src/vec/vecimpl.h" EXTERN int MatSetValuesBlocked_SeqBAIJ(Mat,int,int*,int,int*,PetscScalar*,InsertMode); #undef __FUNCT__ #define __FUNCT__ "MatSetUpMultiply_MPIBAIJ" int MatSetUpMultiply_MPIBAIJ(Mat mat) { Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)mat->data; Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)(baij->B->data); int Nbs = baij->Nbs,i,j,*indices,*aj = B->j,ierr,ec = 0,*garray; int bs = baij->bs,*stmp; IS from,to; Vec gvec; #if defined (PETSC_USE_CTABLE) PetscTable gid1_lid1; PetscTablePosition tpos; int gid,lid; #endif PetscFunctionBegin; #if defined (PETSC_USE_CTABLE) /* use a table - Mark Adams */ ierr = PetscTableCreate(B->mbs,&gid1_lid1);CHKERRQ(ierr); for (i=0; imbs; i++) { for (j=0; jilen[i]; j++) { int data,gid1 = aj[B->i[i]+j] + 1; ierr = PetscTableFind(gid1_lid1,gid1,&data) ;CHKERRQ(ierr); if (!data) { /* one based table */ ierr = PetscTableAdd(gid1_lid1,gid1,++ec);CHKERRQ(ierr); } } } /* form array of columns we need */ ierr = PetscMalloc((ec+1)*sizeof(int),&garray);CHKERRQ(ierr); ierr = PetscTableGetHeadPosition(gid1_lid1,&tpos);CHKERRQ(ierr); while (tpos) { ierr = PetscTableGetNext(gid1_lid1,&tpos,&gid,&lid);CHKERRQ(ierr); gid--; lid--; garray[lid] = gid; } ierr = PetscSortInt(ec,garray);CHKERRQ(ierr); /* qsort(garray, ec, sizeof(int), intcomparcarc); */ ierr = PetscTableRemoveAll(gid1_lid1);CHKERRQ(ierr); for (i=0; imbs; i++) { for (j=0; jilen[i]; j++) { int gid1 = aj[B->i[i] + j] + 1; ierr = PetscTableFind(gid1_lid1,gid1,&lid);CHKERRQ(ierr); lid --; aj[B->i[i]+j] = lid; } } B->nbs = ec; baij->B->n = ec*B->bs; ierr = PetscTableDelete(gid1_lid1);CHKERRQ(ierr); /* Mark Adams */ #else /* Make an array as long as the number of columns */ /* mark those columns that are in baij->B */ ierr = PetscMalloc((Nbs+1)*sizeof(int),&indices);CHKERRQ(ierr); ierr = PetscMemzero(indices,Nbs*sizeof(int));CHKERRQ(ierr); for (i=0; imbs; i++) { for (j=0; jilen[i]; j++) { if (!indices[aj[B->i[i] + j]]) ec++; indices[aj[B->i[i] + j]] = 1; } } /* form array of columns we need */ ierr = PetscMalloc((ec+1)*sizeof(int),&garray);CHKERRQ(ierr); ec = 0; for (i=0; imbs; i++) { for (j=0; jilen[i]; j++) { aj[B->i[i] + j] = indices[aj[B->i[i] + j]]; } } B->nbs = ec; baij->B->n = ec*B->bs; ierr = PetscFree(indices);CHKERRQ(ierr); #endif /* create local vector that is used to scatter into */ ierr = VecCreateSeq(PETSC_COMM_SELF,ec*bs,&baij->lvec);CHKERRQ(ierr); /* create two temporary index sets for building scatter-gather */ for (i=0; icomm,mat->n,mat->N,&gvec);CHKERRQ(ierr); /* gnerate the scatter context */ ierr = VecScatterCreate(gvec,from,baij->lvec,to,&baij->Mvctx);CHKERRQ(ierr); /* Post the receives for the first matrix vector product. We sync-chronize after this on the chance that the user immediately calls MatMult() after assemblying the matrix. */ ierr = VecScatterPostRecvs(gvec,baij->lvec,INSERT_VALUES,SCATTER_FORWARD,baij->Mvctx);CHKERRQ(ierr); ierr = MPI_Barrier(mat->comm);CHKERRQ(ierr); PetscLogObjectParent(mat,baij->Mvctx); PetscLogObjectParent(mat,baij->lvec); PetscLogObjectParent(mat,from); PetscLogObjectParent(mat,to); baij->garray = garray; PetscLogObjectMemory(mat,(ec+1)*sizeof(int)); ierr = ISDestroy(from);CHKERRQ(ierr); ierr = ISDestroy(to);CHKERRQ(ierr); ierr = VecDestroy(gvec);CHKERRQ(ierr); PetscFunctionReturn(0); } /* Takes the local part of an already assembled MPIBAIJ matrix and disassembles it. This is to allow new nonzeros into the matrix that require more communication in the matrix vector multiply. Thus certain data-structures must be rebuilt. Kind of slow! But that's what application programmers get when they are sloppy. */ #undef __FUNCT__ #define __FUNCT__ "DisAssemble_MPIBAIJ" int DisAssemble_MPIBAIJ(Mat A) { Mat_MPIBAIJ *baij = (Mat_MPIBAIJ*)A->data; Mat B = baij->B,Bnew; Mat_SeqBAIJ *Bbaij = (Mat_SeqBAIJ*)B->data; int ierr,i,j,mbs=Bbaij->mbs,n = A->N,col,*garray=baij->garray; int bs2 = baij->bs2,*nz,ec,m = A->m; MatScalar *a = Bbaij->a; PetscScalar *atmp; #if defined(PETSC_USE_MAT_SINGLE) int k; #endif PetscFunctionBegin; /* free stuff related to matrix-vec multiply */ ierr = VecGetSize(baij->lvec,&ec);CHKERRQ(ierr); /* needed for PetscLogObjectMemory below */ ierr = VecDestroy(baij->lvec);CHKERRQ(ierr); baij->lvec = 0; ierr = VecScatterDestroy(baij->Mvctx);CHKERRQ(ierr); baij->Mvctx = 0; if (baij->colmap) { #if defined (PETSC_USE_CTABLE) ierr = PetscTableDelete(baij->colmap); baij->colmap = 0;CHKERRQ(ierr); #else ierr = PetscFree(baij->colmap);CHKERRQ(ierr); baij->colmap = 0; PetscLogObjectMemory(A,-Bbaij->nbs*sizeof(int)); #endif } /* make sure that B is assembled so we can access its values */ ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); /* invent new B and copy stuff over */ ierr = PetscMalloc(mbs*sizeof(int),&nz);CHKERRQ(ierr); for (i=0; ii[i+1]-Bbaij->i[i]; } ierr = MatCreateSeqBAIJ(PETSC_COMM_SELF,baij->bs,m,n,0,nz,&Bnew);CHKERRQ(ierr); ierr = MatSetOption(Bnew,MAT_COLUMN_ORIENTED);CHKERRQ(ierr); #if defined(PETSC_USE_MAT_SINGLE) ierr = PetscMalloc(bs2*sizeof(PetscScalar),&atmp);CHKERRQ(ierr); #endif for (i=0; ii[i]; ji[i+1]; j++) { col = garray[Bbaij->j[j]]; #if defined(PETSC_USE_MAT_SINGLE) for (k=0; kinsertmode);CHKERRQ(ierr); } } ierr = MatSetOption(Bnew,MAT_ROW_ORIENTED);CHKERRQ(ierr); #if defined(PETSC_USE_MAT_SINGLE) ierr = PetscFree(atmp);CHKERRQ(ierr); #endif ierr = PetscFree(nz);CHKERRQ(ierr); ierr = PetscFree(baij->garray);CHKERRQ(ierr); baij->garray = 0; PetscLogObjectMemory(A,-ec*sizeof(int)); ierr = MatDestroy(B);CHKERRQ(ierr); PetscLogObjectParent(A,Bnew); baij->B = Bnew; A->was_assembled = PETSC_FALSE; PetscFunctionReturn(0); } /* ugly stuff added for Glenn someday we should fix this up */ int *uglyrmapd = 0,*uglyrmapo = 0; /* mapping from the local ordering to the "diagonal" and "off-diagonal" parts of the local matrix */ Vec uglydd = 0,uglyoo = 0; /* work vectors used to scale the two parts of the local matrix */ #undef __FUNC__ #define __FUNC__ "MatMPIBAIJDiagonalScaleLocalSetUp" int MatMPIBAIJDiagonalScaleLocalSetUp(Mat inA,Vec scale) { Mat_MPIBAIJ *ina = (Mat_MPIBAIJ*) inA->data; /*access private part of matrix */ Mat_SeqBAIJ *A = (Mat_SeqBAIJ*)ina->A->data; Mat_SeqBAIJ *B = (Mat_SeqBAIJ*)ina->B->data; int ierr,bs = A->bs,i,n,nt,j,cstart,cend,no,*garray = ina->garray,*lindices; int *r_rmapd,*r_rmapo; PetscFunctionBegin; ierr = MatGetOwnershipRange(inA,&cstart,&cend);CHKERRQ(ierr); ierr = MatGetSize(ina->A,PETSC_NULL,&n);CHKERRQ(ierr); ierr = PetscMalloc((inA->bmapping->n+1)*sizeof(int),&r_rmapd);CHKERRQ(ierr); ierr = PetscMemzero(r_rmapd,inA->bmapping->n*sizeof(int));CHKERRQ(ierr); nt = 0; for (i=0; ibmapping->n; i++) { if (inA->bmapping->indices[i]*bs >= cstart && inA->bmapping->indices[i]*bs < cend) { nt++; r_rmapd[i] = inA->bmapping->indices[i] + 1; } } if (nt*bs != n) SETERRQ2(1,"Hmm nt*bs %d n %d",nt*bs,n); ierr = PetscMalloc((n+1)*sizeof(int),&uglyrmapd);CHKERRQ(ierr); for (i=0; ibmapping->n; i++) { if (r_rmapd[i]){ for (j=0; jNbs+1)*sizeof(int),&lindices);CHKERRQ(ierr); ierr = PetscMemzero(lindices,ina->Nbs*sizeof(int));CHKERRQ(ierr); for (i=0; inbs; i++) { lindices[garray[i]] = i+1; } no = inA->bmapping->n - nt; ierr = PetscMalloc((inA->bmapping->n+1)*sizeof(int),&r_rmapo);CHKERRQ(ierr); ierr = PetscMemzero(r_rmapo,inA->bmapping->n*sizeof(int));CHKERRQ(ierr); nt = 0; for (i=0; ibmapping->n; i++) { if (lindices[inA->bmapping->indices[i]]) { nt++; r_rmapo[i] = lindices[inA->bmapping->indices[i]]; } } if (nt > no) SETERRQ2(1,"Hmm nt %d no %d",nt,n); ierr = PetscFree(lindices);CHKERRQ(ierr); ierr = PetscMalloc((nt*bs+1)*sizeof(int),&uglyrmapo);CHKERRQ(ierr); for (i=0; ibmapping->n; i++) { if (r_rmapo[i]){ for (j=0; jdata; /*access private part of matrix */ int ierr,n,i; PetscScalar *d,*o,*s; PetscFunctionBegin; ierr = VecGetArray(scale,&s);CHKERRQ(ierr); ierr = VecGetLocalSize(uglydd,&n);CHKERRQ(ierr); ierr = VecGetArray(uglydd,&d);CHKERRQ(ierr); for (i=0; iA,PETSC_NULL,uglydd);CHKERRQ(ierr); ierr = VecGetLocalSize(uglyoo,&n);CHKERRQ(ierr); ierr = VecGetArray(uglyoo,&o);CHKERRQ(ierr); for (i=0; iB,PETSC_NULL,uglyoo);CHKERRQ(ierr); PetscFunctionReturn(0); }