#include /*I "petscmat.h" I*/ typedef struct { Mat A,U,V; Vec work1,work2; /* Sequential vectors that hold partial products */ PetscMPIInt nwork; /* length of work vectors */ } Mat_LRC; PETSC_INTERN PetscErrorCode MatMultTranspose_SeqDense(Mat,Vec,Vec); PETSC_INTERN PetscErrorCode MatMultAdd_SeqDense(Mat,Vec,Vec,Vec); PETSC_INTERN PetscErrorCode MatMult_SeqDense(Mat,Vec,Vec); #undef __FUNCT__ #define __FUNCT__ "MatMult_LRC" PetscErrorCode MatMult_LRC(Mat N,Vec x,Vec y) { Mat_LRC *Na = (Mat_LRC*)N->data; PetscErrorCode ierr; PetscScalar *w1,*w2; PetscFunctionBegin; /* multiply the local part of V with the local part of x */ /* note in this call x is treated as a sequential vector */ ierr = MatMultTranspose_SeqDense(Na->V,x,Na->work1);CHKERRQ(ierr); /* form the sum of all the local multiplies: this is work2 = V'*x = sum_{all processors} work1 */ ierr = VecGetArray(Na->work1,&w1);CHKERRQ(ierr); ierr = VecGetArray(Na->work2,&w2);CHKERRQ(ierr); ierr = MPIU_Allreduce(w1,w2,Na->nwork,MPIU_SCALAR,MPIU_SUM,PetscObjectComm((PetscObject)N));CHKERRQ(ierr); ierr = VecRestoreArray(Na->work1,&w1);CHKERRQ(ierr); ierr = VecRestoreArray(Na->work2,&w2);CHKERRQ(ierr); if (Na->A) { /* form y = A*x */ ierr = MatMult(Na->A,x,y);CHKERRQ(ierr); /* multiply-add y = y + U*work2 */ /* note in this call y is treated as a sequential vector */ ierr = MatMultAdd_SeqDense(Na->U,Na->work2,y,y);CHKERRQ(ierr); } else { /* multiply y = U*work2 */ ierr = MatMult_SeqDense(Na->U,Na->work2,y);CHKERRQ(ierr); } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatDestroy_LRC" PetscErrorCode MatDestroy_LRC(Mat N) { Mat_LRC *Na = (Mat_LRC*)N->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = MatDestroy(&Na->A);CHKERRQ(ierr); ierr = MatDestroy(&Na->U);CHKERRQ(ierr); ierr = MatDestroy(&Na->V);CHKERRQ(ierr); ierr = VecDestroy(&Na->work1);CHKERRQ(ierr); ierr = VecDestroy(&Na->work2);CHKERRQ(ierr); ierr = PetscFree(N->data);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatCreateLRC" /*@ MatCreateLRC - Creates a new matrix object that behaves like A + U*V' Collective on Mat Input Parameters: + A - the (sparse) matrix (can be NULL) - U, V - two dense rectangular (tall and skinny) matrices Output Parameter: . N - the matrix that represents A + U*V' Notes: The matrix A + U*V' is not formed! Rather the new matrix object performs the matrix-vector product by first multiplying by A and then adding the other term. If A is NULL then the new object behaves like a low-rank matrix U*V'. Use V=U (or V=NULL) for a symmetric low-rank correction, A + U*U'. Level: intermediate @*/ PetscErrorCode MatCreateLRC(Mat A,Mat U,Mat V,Mat *N) { PetscErrorCode ierr; PetscInt m,n,k,m1,n1,k1; Mat_LRC *Na; PetscFunctionBegin; if (A) PetscValidHeaderSpecific(A,MAT_CLASSID,1); PetscValidHeaderSpecific(U,MAT_CLASSID,2); if (V) PetscValidHeaderSpecific(V,MAT_CLASSID,3); else V=U; if (A) PetscCheckSameComm(A,1,U,2); PetscCheckSameComm(U,2,V,3); ierr = MatGetSize(U,NULL,&k);CHKERRQ(ierr); ierr = MatGetSize(V,NULL,&k1);CHKERRQ(ierr); if (k!=k1) SETERRQ(PetscObjectComm((PetscObject)U),PETSC_ERR_ARG_INCOMP,"U and V have different number of columns"); ierr = MatGetLocalSize(U,&m,NULL);CHKERRQ(ierr); ierr = MatGetLocalSize(V,&n,NULL);CHKERRQ(ierr); if (A) { ierr = MatGetLocalSize(A,&m1,&n1);CHKERRQ(ierr); if (m!=m1) SETERRQ(PetscObjectComm((PetscObject)U),PETSC_ERR_ARG_INCOMP,"Local dimensions of U and A do not match"); if (n!=n1) SETERRQ(PetscObjectComm((PetscObject)V),PETSC_ERR_ARG_INCOMP,"Local dimensions of V and A do not match"); } ierr = MatCreate(PetscObjectComm((PetscObject)U),N);CHKERRQ(ierr); ierr = MatSetSizes(*N,m,n,PETSC_DECIDE,PETSC_DECIDE);CHKERRQ(ierr); ierr = PetscObjectChangeTypeName((PetscObject)*N,MATLRC);CHKERRQ(ierr); ierr = PetscNewLog(*N,&Na);CHKERRQ(ierr); (*N)->data = (void*)Na; Na->A = A; ierr = MatDenseGetLocalMatrix(U,&Na->U);CHKERRQ(ierr); ierr = MatDenseGetLocalMatrix(V,&Na->V);CHKERRQ(ierr); if (A) { ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); } ierr = PetscObjectReference((PetscObject)Na->U);CHKERRQ(ierr); ierr = PetscObjectReference((PetscObject)Na->V);CHKERRQ(ierr); ierr = VecCreateSeq(PETSC_COMM_SELF,U->cmap->N,&Na->work1);CHKERRQ(ierr); ierr = VecDuplicate(Na->work1,&Na->work2);CHKERRQ(ierr); Na->nwork = U->cmap->N; (*N)->ops->destroy = MatDestroy_LRC; (*N)->ops->mult = MatMult_LRC; (*N)->assembled = PETSC_TRUE; (*N)->preallocated = PETSC_TRUE; (*N)->cmap->N = V->rmap->N; (*N)->rmap->N = U->rmap->N; (*N)->cmap->n = V->rmap->n; (*N)->rmap->n = U->rmap->n; PetscFunctionReturn(0); }