/* Some PETSc utilites */ #include /*I "petscsys.h" I*/ #if defined(PETSC_HAVE_STDLIB_H) #include #endif #include /* ---------------------------------------------------------------- */ /* A simple way to manage tags inside a communicator. It uses the attributes to determine if a new communicator is needed and to store the available tags. */ #undef __FUNCT__ #define __FUNCT__ "PetscObjectGetNewTag" /*@C PetscObjectGetNewTag - Gets a unique new tag from a PETSc object. All processors that share the object MUST call this routine EXACTLY the same number of times. This tag should only be used with the current objects communicator; do NOT use it with any other MPI communicator. Collective on PetscObject Input Parameter: . obj - the PETSc object; this must be cast with a (PetscObject), for example, PetscObjectGetNewTag((PetscObject)mat,&tag); Output Parameter: . tag - the new tag Level: developer Concepts: tag^getting Concepts: message tag^getting Concepts: MPI message tag^getting .seealso: PetscCommGetNewTag() @*/ PetscErrorCode PetscObjectGetNewTag(PetscObject obj,PetscMPIInt *tag) { PetscErrorCode ierr; PetscFunctionBegin; ierr = PetscCommGetNewTag(obj->comm,tag);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "PetscCommGetNewTag" /*@ PetscCommGetNewTag - Gets a unique new tag from a PETSc communicator. All processors that share the communicator MUST call this routine EXACTLY the same number of times. This tag should only be used with the current objects communicator; do NOT use it with any other MPI communicator. Collective on comm Input Parameter: . comm - the MPI communicator Output Parameter: . tag - the new tag Level: developer Concepts: tag^getting Concepts: message tag^getting Concepts: MPI message tag^getting .seealso: PetscObjectGetNewTag(), PetscCommDuplicate() @*/ PetscErrorCode PetscCommGetNewTag(MPI_Comm comm,PetscMPIInt *tag) { PetscErrorCode ierr; PetscCommCounter *counter; PetscMPIInt *maxval,flg; PetscFunctionBegin; PetscValidIntPointer(tag,2); ierr = MPI_Attr_get(comm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Bad MPI communicator supplied; must be a PETSc communicator"); if (counter->tag < 1) { ierr = PetscInfo1(0,"Out of tags for object, starting to recycle. Comm reference count %d\n",counter->refcount);CHKERRQ(ierr); ierr = MPI_Attr_get(MPI_COMM_WORLD,MPI_TAG_UB,&maxval,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI error: MPI_Attr_get() is not returning a MPI_TAG_UB"); counter->tag = *maxval - 128; /* hope that any still active tags were issued right at the beginning of the run */ } *tag = counter->tag--; #if defined(PETSC_USE_DEBUG) /* Hanging here means that some processes have called PetscCommGetNewTag() and others have not. */ ierr = MPI_Barrier(comm);CHKERRQ(ierr); #endif PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "PetscCommDuplicate" /*@C PetscCommDuplicate - Duplicates the communicator only if it is not already a PETSc communicator. Collective on MPI_Comm Input Parameters: . comm_in - Input communicator Output Parameters: + comm_out - Output communicator. May be comm_in. - first_tag - Tag available that has not already been used with this communicator (you may pass in PETSC_NULL if you do not need a tag) PETSc communicators are just regular MPI communicators that keep track of which tags have been used to prevent tag conflict. If you pass a non-PETSc communicator into a PETSc creation routine it will attach a private communicator for use in the objects communications. The internal MPI_Comm is used to perform all the MPI calls for PETSc, the outer MPI_Comm is a user level MPI_Comm that may be performing communication for the user or other library and so IS NOT used by PETSc. Level: developer Concepts: communicator^duplicate .seealso: PetscObjectGetNewTag(), PetscCommGetNewTag(), PetscCommDestroy() @*/ PetscErrorCode PetscCommDuplicate(MPI_Comm comm_in,MPI_Comm *comm_out,PetscMPIInt* first_tag) { PetscErrorCode ierr; PetscCommCounter *counter; PetscMPIInt *maxval,flg; #if defined(PETSC_THREADCOMM_ACTIVE) PetscThreadComm tcomm; #endif PetscFunctionBegin; ierr = MPI_Attr_get(comm_in,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); if (!flg) { /* this is NOT a PETSc comm */ void *ptr; /* check if this communicator has a PETSc communicator imbedded in it */ ierr = MPI_Attr_get(comm_in,Petsc_InnerComm_keyval,&ptr,&flg);CHKERRQ(ierr); if (!flg) { /* This communicator is not yet known to this system, so we duplicate it and make an internal communicator */ ierr = MPI_Comm_dup(comm_in,comm_out);CHKERRQ(ierr); ierr = MPI_Attr_get(MPI_COMM_WORLD,MPI_TAG_UB,&maxval,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI error: MPI_Attr_get() is not returning a MPI_TAG_UB"); ierr = PetscMalloc(sizeof(PetscCommCounter),&counter);CHKERRQ(ierr); counter->tag = *maxval; counter->refcount = 0; counter->namecount = 0; ierr = MPI_Attr_put(*comm_out,Petsc_Counter_keyval,counter);CHKERRQ(ierr); ierr = PetscInfo3(0,"Duplicating a communicator %ld %ld max tags = %d\n",(long)comm_in,(long)*comm_out,*maxval);CHKERRQ(ierr); /* save PETSc communicator inside user communicator, so we can get it next time */ /* Use PetscMemcpy() because casting from pointer to integer of different size is not allowed with some compilers */ ierr = PetscMemcpy(&ptr,comm_out,sizeof(MPI_Comm));CHKERRQ(ierr); ierr = MPI_Attr_put(comm_in,Petsc_InnerComm_keyval,ptr);CHKERRQ(ierr); /* Use PetscMemcpy() because casting from pointer to integer of different size is not allowed with some compilers */ ierr = PetscMemcpy(&ptr,&comm_in,sizeof(MPI_Comm));CHKERRQ(ierr); ierr = MPI_Attr_put(*comm_out,Petsc_OuterComm_keyval,ptr);CHKERRQ(ierr); } else { /* pull out the inner MPI_Comm and hand it back to the caller */ /* Use PetscMemcpy() because casting from pointer to integer of different size is not allowed with some compilers */ ierr = PetscMemcpy(comm_out,&ptr,sizeof(MPI_Comm));CHKERRQ(ierr); ierr = MPI_Attr_get(*comm_out,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Inner PETSc communicator does not have its tag/name counter attribute set"); ierr = PetscInfo2(0,"Using internal PETSc communicator %ld %ld\n",(long)comm_in,(long)*comm_out);CHKERRQ(ierr); } } else { *comm_out = comm_in; } #if defined(PETSC_USE_DEBUG) /* Hanging here means that some processes have called PetscCommDuplicate() and others have not. This likley means that a subset of processes in a MPI_Comm have attempted to create a PetscObject! ALL processes that share a communicator MUST shared objects created from that communicator. */ ierr = MPI_Barrier(comm_in);CHKERRQ(ierr); #endif if (counter->tag < 1) { ierr = PetscInfo1(0,"Out of tags for object, starting to recycle. Comm reference count %d\n",counter->refcount);CHKERRQ(ierr); ierr = MPI_Attr_get(MPI_COMM_WORLD,MPI_TAG_UB,&maxval,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"MPI error: MPI_Attr_get() is not returning a MPI_TAG_UB"); counter->tag = *maxval - 128; /* hope that any still active tags were issued right at the beginning of the run */ } if (first_tag) { *first_tag = counter->tag--; } #if defined(PETSC_THREADCOMM_ACTIVE) /* Only the main thread updates counter->refcount */ ierr = MPI_Attr_get(*comm_out,Petsc_ThreadComm_keyval,(PetscThreadComm*)&tcomm,&flg);CHKERRQ(ierr); if (flg) { PetscInt trank; trank = PetscThreadCommGetRank(tcomm); if (!trank) counter->refcount++; /* number of references to this comm */ } else counter->refcount++; #else counter->refcount++; #endif PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "PetscCommDestroy" /*@C PetscCommDestroy - Frees communicator. Use in conjunction with PetscCommDuplicate(). Collective on MPI_Comm Input Parameter: . comm - the communicator to free Level: developer Concepts: communicator^destroy .seealso: PetscCommDuplicate() @*/ PetscErrorCode PetscCommDestroy(MPI_Comm *comm) { PetscErrorCode ierr; PetscCommCounter *counter; PetscMPIInt flg; MPI_Comm icomm = *comm,ocomm; void *ptr; #if defined(PETSC_THREADCOMM_ACTIVE) PetscThreadComm tcomm; #endif PetscFunctionBegin; ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); if (!flg) { /* not a PETSc comm, check if it has an inner comm */ ierr = MPI_Attr_get(icomm,Petsc_InnerComm_keyval,&ptr,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"MPI_Comm does not have tag/name counter nor does it have inner MPI_Comm"); /* Use PetscMemcpy() because casting from pointer to integer of different size is not allowed with some compilers */ ierr = PetscMemcpy(&icomm,&ptr,sizeof(MPI_Comm));CHKERRQ(ierr); ierr = MPI_Attr_get(icomm,Petsc_Counter_keyval,&counter,&flg);CHKERRQ(ierr); if (!flg) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Inner MPI_Comm does not have expected tag/name counter, problem with corrupted memory"); } #if defined(PETSC_THREADCOMM_ACTIVE) /* Only the main thread updates counter->refcount */ ierr = MPI_Attr_get(icomm,Petsc_ThreadComm_keyval,(PetscThreadComm*)&tcomm,&flg);CHKERRQ(ierr); if(flg) { PetscInt trank; trank = PetscThreadCommGetRank(tcomm); /* Only thread rank 0 updates the counter */ if(!trank) counter->refcount--; } else counter->refcount--; #else counter->refcount--; #endif if (!counter->refcount) { /* if MPI_Comm has outer comm then remove reference to inner MPI_Comm from outer MPI_Comm */ ierr = MPI_Attr_get(icomm,Petsc_OuterComm_keyval,&ptr,&flg);CHKERRQ(ierr); if (flg) { /* Use PetscMemcpy() because casting from pointer to integer of different size is not allowed with some compilers */ ierr = PetscMemcpy(&ocomm,&ptr,sizeof(MPI_Comm));CHKERRQ(ierr); ierr = MPI_Attr_get(ocomm,Petsc_InnerComm_keyval,&ptr,&flg);CHKERRQ(ierr); if (flg) { ierr = MPI_Attr_delete(ocomm,Petsc_InnerComm_keyval);CHKERRQ(ierr); } else SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_CORRUPT,"Outer MPI_Comm %ld does not have expected reference to inner comm %d, problem with corrupted memory",(long int)ocomm,(long int)icomm); } ierr = PetscInfo1(0,"Deleting PETSc MPI_Comm %ld\n",(long)icomm);CHKERRQ(ierr); ierr = MPI_Comm_free(&icomm);CHKERRQ(ierr); } *comm = 0; PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "PetscObjectsGetGlobalNumbering" /*@C PetscObjectsGetGlobalNumbering - computes a global numbering of PetscObjects living on subcommunicators of a given communicator. This results in a deadlock-free ordering of the subcommunicators and, hence, the objects. Collective on comm. Input Parameters: + comm - MPI_Comm . len - length of objlist - objlist - a list of PETSc objects living on subcommunicators of comm (subcommunicator ordering is assumed to be deadlock-free) Output Parameters: + count - number of globally-distinct subcommunicators on objlist . numbering - global numbers of objlist entries (allocated by user) Level: developer Concepts: MPI subcomm^numbering @*/ PetscErrorCode PetscObjectsGetGlobalNumbering(MPI_Comm comm, PetscInt len, PetscObject *objlist, PetscInt *count, PetscInt *numbering) { PetscErrorCode ierr; PetscInt i, roots, offset; PetscMPIInt size, rank, r0 = 0, r; MPI_Group group, subgroup; PetscFunctionBegin; PetscValidPointer(objlist,3); PetscValidPointer(count,4); PetscValidPointer(numbering,5); /* Identify comm ranks of subcomm roots. What makes it work is that MPI_Group_translate_ranks is not collective. */ ierr = MPI_Comm_size(comm, &size); CHKERRQ(ierr); ierr = MPI_Comm_rank(comm, &rank); CHKERRQ(ierr); ierr = MPI_Comm_group(comm, &group); CHKERRQ(ierr); roots = 0; for(i = 0; i < len; ++i) { ierr = MPI_Comm_group(objlist[i]->comm, &subgroup); CHKERRQ(ierr); ierr = MPI_Group_translate_ranks(subgroup, 1,&r0,group,&r); CHKERRQ(ierr); if(r == MPI_UNDEFINED) SETERRQ1(objlist[i]->comm, PETSC_ERR_ARG_WRONG, "Cannot determine global rank of the root of local subcomm %D", i); CHKERRQ(ierr); /* Am I the root of the i-th subcomm? */ if(r == rank) ++roots; } /* Obtain the sum of all roots -- the global number of distinct subcomms. */ ierr = MPI_Allreduce((void*)&roots,(void*)count,1,MPIU_INT,MPI_SUM,comm); CHKERRQ(ierr); /* Now introduce a global numbering for subcomms, initially known only by subcomm roots. */ /* At the subcomm roots number the subcomms in the subcomm-root local manner, and make it global by calculating the shift. */ ierr = MPI_Scan((PetscMPIInt*)&roots,(PetscMPIInt*)&offset,1,MPI_INT,MPI_SUM,comm); CHKERRQ(ierr); offset -= roots; /* Now we are ready to communicate global subcomm numbers from subcomm roots to the other subcomm ranks.*/ /* Communication proceeds one subcomm at a time: here the deadlock-free ordering assumption is used. The reason for this is that getting a tag on each subcomm is collective. */ roots = 0; for(i = 0; i < len; ++i) { /* The following only makes sense if ssrank == 0 (below). In that case roots counts the number of local subdomains this rank anchors (so far). The global number is then this roots counter plus the offset of ALL the local roots at the ranks before this one. */ PetscInt num = offset + roots; PetscMPIInt srank, ssize, tag, j; MPI_Request *sreq, rreq; /* Subcomm rank and size. */ ierr = MPI_Comm_size(objlist[i]->comm, &ssize); CHKERRQ(ierr); ierr = MPI_Comm_rank(objlist[i]->comm, &srank); CHKERRQ(ierr); /* Obtain a subcomm tag. */ ierr = PetscCommGetNewTag(objlist[i]->comm, &tag); CHKERRQ(ierr); /* Post the receive first. */ ierr = MPI_Irecv((PetscMPIInt*)(numbering+i),1,MPI_INT,0,tag,objlist[i]->comm, &rreq); CHKERRQ(ierr); /* Only the subcomm root posts the sends. */ if(!srank) { ierr = PetscMalloc(sizeof(MPI_Request)*ssize, &sreq); CHKERRQ(ierr); for(j = 0; j < ssize; ++j) { ierr = MPI_Isend((PetscMPIInt*)&num,1,MPI_INT,j,tag,objlist[i]->comm,sreq+j); CHKERRQ(ierr); } ++roots; } /* Now we wait on receives. */ ierr = MPI_Wait(&rreq, MPI_STATUS_IGNORE); CHKERRQ(ierr); /* And finally we wait on the sends. */ if(!srank) { ierr = MPI_Waitall(ssize,sreq,MPI_STATUSES_IGNORE); CHKERRQ(ierr); ierr = PetscFree(sreq); CHKERRQ(ierr); } } PetscFunctionReturn(0); }