/* Implements the Kokkos kernel */ #define PETSC_SKIP_CXX_COMPLEX_FIX #include #include /*I "petscdmplex.h" I*/ #include #include #include #include #include typedef Kokkos::TeamPolicy<>::member_type team_member; #define PETSC_DEVICE_FUNC_DECL KOKKOS_INLINE_FUNCTION #include "../land_tensors.h" #define atomicAdd(e, f) Kokkos::atomic_fetch_add(e, f) #include #undef atomicAdd namespace landau_inner_red { // namespace helps with name resolution in reduction identity template< class ScalarType > struct array_type { ScalarType gg2[LANDAU_DIM]; ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's array_type() { for (int j = 0; j < LANDAU_DIM; j++){ gg2[j] = 0; for (int k = 0; k < LANDAU_DIM; k++){ gg3[j][k] = 0; } } } KOKKOS_INLINE_FUNCTION // Copy Constructor array_type(const array_type & rhs) { for (int j = 0; j < LANDAU_DIM; j++){ gg2[j] = rhs.gg2[j]; for (int k = 0; k < LANDAU_DIM; k++){ gg3[j][k] = rhs.gg3[j][k]; } } } KOKKOS_INLINE_FUNCTION // add operator array_type& operator += (const array_type& src) { for (int j = 0; j < LANDAU_DIM; j++){ gg2[j] += src.gg2[j]; for (int k = 0; k < LANDAU_DIM; k++){ gg3[j][k] += src.gg3[j][k]; } } return *this; } KOKKOS_INLINE_FUNCTION // volatile add operator void operator += (const volatile array_type& src) volatile { for (int j = 0; j < LANDAU_DIM; j++){ gg2[j] += src.gg2[j]; for (int k = 0; k < LANDAU_DIM; k++){ gg3[j][k] += src.gg3[j][k]; } } } }; typedef array_type TensorValueType; // used to simplify code below } namespace Kokkos { //reduction identity must be defined in Kokkos namespace template<> struct reduction_identity< landau_inner_red::TensorValueType > { KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); } }; } extern "C" { PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *maps, pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf, PetscInt Nq) { P4estVertexMaps h_maps; /* host container */ const Kokkos::View > h_points ((pointInterpolationP4est*)pointMaps, maps->num_reduced); const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits > h_gidx ((LandauIdx*)maps->gIdx, maps->num_elements); Kokkos::View *d_points = new Kokkos::View("points", maps->num_reduced); Kokkos::View *d_gidx = new Kokkos::View("gIdx", maps->num_elements); PetscFunctionBegin; Kokkos::deep_copy (*d_gidx, h_gidx); Kokkos::deep_copy (*d_points, h_points); h_maps.num_elements = maps->num_elements; h_maps.num_face = maps->num_face; h_maps.num_reduced = maps->num_reduced; h_maps.deviceType = maps->deviceType; h_maps.Nf = Nf; h_maps.Nq = Nq; h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data(); maps->vp1 = (void*)d_points; h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data(); maps->vp2 = (void*)d_gidx; { Kokkos::View h_maps_k(&h_maps); Kokkos::View *d_maps_k = new Kokkos::View(Kokkos::create_mirror(DeviceMemorySpace(),h_maps_k)); Kokkos::deep_copy (*d_maps_k, h_maps_k); maps->data = d_maps_k->data(); maps->vp3 = (void*)d_maps_k; // debug // PetscErrorCode ierr; // PetscInt ej,q,s; // ierr = PetscPrintf(PETSC_COMM_SELF,"=== c_maps size --> %D. Kokkos::View=%p maps->data=%p P4estVertexMaps *maps=%p\n",maps->num_reduced, d_maps_k, maps->data, maps);CHKERRQ(ierr); // for (ej = 0; ej < maps->num_reduced; ++ej) { // ierr = PetscPrintf(PETSC_COMM_SELF,"\t\tconstrant %3D) ",ej); // for (q = 0; q < maps->num_face; ++q) { // ierr = PetscPrintf(PETSC_COMM_SELF,"\t %3D - %13.5e ; ", maps->data->c_maps[ej][q].gid, maps->data->c_maps[ej][q].scale);CHKERRQ(ierr); // } // ierr = PetscPrintf(PETSC_COMM_SELF,"\n"); // } // ierr = PetscPrintf(PETSC_COMM_SELF,"================= gIDx \n"); // for (ej = 0; ej < maps->num_elements; ++ej) { // for (q = 0; q < Nq; ++q) { // for (s = 0; s < Nf; ++s) { // ierr = PetscPrintf(PETSC_COMM_SELF," %3D ", maps->data->gIdx[ej][s][q]); // } // ierr = PetscPrintf(PETSC_COMM_SELF," ; "); // } // ierr = PetscPrintf(PETSC_COMM_SELF,"\n"); // } } PetscFunctionReturn(0); } PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *maps) { Kokkos::View *a = (Kokkos::View*)maps->vp1; Kokkos::View*b = (Kokkos::View*)maps->vp2; Kokkos::View *c = (Kokkos::View*)maps->vp3; delete a; delete b; delete c; PetscFunctionReturn(0); } PetscErrorCode LandauKokkosJacobian(DM plex, const PetscInt Nq, PetscReal nu_alpha[], PetscReal nu_beta[], PetscReal invMass[], PetscReal Eq_m[], const LandauIPData *const IPData, PetscReal a_invJ[], const PetscInt num_sub_blocks, PetscReal *mass_w, PetscReal shift, const PetscLogEvent events[], Mat JacP) { PetscErrorCode ierr; PetscInt *Nbf,Nb,cStart,cEnd,Nf,dim,numCells,totDim,ipdatasz,global_elem_mat_sz,NfJac,nip; PetscTabulation *Tf; PetscDS prob; PetscSection section, globalSection; PetscReal *BB,*DD; LandauCtx *ctx; P4estVertexMaps *d_maps=NULL; PetscSplitCSRDataStructure *d_mat=NULL; PetscFunctionBegin; ierr = DMGetApplicationContext(plex, &ctx);CHKERRQ(ierr); if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr); ierr = DMPlexGetHeightStratum(plex,0,&cStart,&cEnd);CHKERRQ(ierr); numCells = cEnd - cStart; ierr = DMGetDS(plex, &prob);CHKERRQ(ierr); ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); ierr = PetscDSGetDimensions(prob, &Nbf);CHKERRQ(ierr); Nb = Nbf[0]; if (Nq != Nb) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Nq != Nb. %D %D",Nq,Nb); if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr); if (ctx->gpu_assembly) { PetscContainer container; ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr); if (container) { // not here first call #if defined(PETSC_HAVE_KOKKOS_KERNELS) P4estVertexMaps *h_maps=NULL; ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr); ierr = PetscInfo2(JacP, "Have container maps=%p maps->data=%p\n", h_maps, h_maps ? h_maps->data : NULL);CHKERRQ(ierr); if (h_maps->data) { d_maps = h_maps->data; } else { SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); } // this does the setup the first time called ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr); global_elem_mat_sz = 0; #else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly w/o kokkos kernels -- should not be here"); #endif } else { // kernel output - first call assembled on device global_elem_mat_sz = numCells; } } else { global_elem_mat_sz = numCells; // no device assembly } BB = Tf[0]->T[0]; DD = Tf[0]->T[1]; ierr = DMGetLocalSection(plex, §ion);CHKERRQ(ierr); ierr = DMGetGlobalSection(plex, &globalSection);CHKERRQ(ierr); if (mass_w) { ipdatasz = 0; NfJac = 0; nip = numCells*Nq; } else { ipdatasz = LandauGetIPDataSize(IPData); NfJac = Nf; nip = IPData->nip_; } ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr); { using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; using g2_scr_t = Kokkos::View; using g3_scr_t = Kokkos::View; const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf,Nq) + g3_scr_t::shmem_size(dim,dim,Nf,Nq)); int conc, team_size; const Kokkos::View > h_alpha (nu_alpha, NfJac); Kokkos::View d_alpha ("nu_alpha", NfJac); const Kokkos::View > h_beta (nu_beta, NfJac); Kokkos::View d_beta ("nu_beta", NfJac); const Kokkos::View > h_invMass (invMass,NfJac); Kokkos::View d_invMass ("invMass", NfJac); const Kokkos::View > h_Eq_m (Eq_m,NfJac); Kokkos::View d_Eq_m ("Eq_m", NfJac); const Kokkos::View > h_BB (BB,Nq*Nb); Kokkos::View d_BB ("BB", Nq*Nb); const Kokkos::View > h_DD (DD,Nq*Nb*dim); Kokkos::View d_DD ("DD", Nq*Nb*dim); const Kokkos::View > h_ipdata_raw (IPData->w, ipdatasz); // IPData->w==0 for mass Kokkos::View d_ipdata_raw ("ipdata", ipdatasz); const Kokkos::View > h_invJ (a_invJ, mass_w ? 0 : nip*dim*dim); Kokkos::View d_invJ ("invJ", mass_w ? 0 : nip*dim*dim); const Kokkos::View > h_mass_w (mass_w, mass_w ? nip : 0); Kokkos::View d_mass_w ("mass_w", mass_w ? nip : 0); Kokkos::View d_elem_mats("element matrices", global_elem_mat_sz, totDim*totDim); Kokkos::View d_f("element matrices", NfJac, nip); Kokkos::View d_df("element matrices", dim, NfJac, nip); Kokkos::deep_copy (d_mass_w, h_mass_w); Kokkos::deep_copy (d_ipdata_raw, h_ipdata_raw); Kokkos::deep_copy (d_alpha, h_alpha); Kokkos::deep_copy (d_beta, h_beta); Kokkos::deep_copy (d_invMass, h_invMass); Kokkos::deep_copy (d_Eq_m, h_Eq_m); Kokkos::deep_copy (d_BB, h_BB); Kokkos::deep_copy (d_DD, h_DD); Kokkos::deep_copy (d_invJ, h_invJ); ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr); #define KOKKOS_SHARED_LEVEL 1 conc = Kokkos::DefaultExecutionSpace().concurrency(), team_size = conc > Nq ? Nq : 1; // PetscInfo5(plex, "shared memory size: %d bytes in level %d. mass_w.size=%d. #threads=%D team size=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,d_mass_w.size(),num_sub_blocks,team_size); // get f and df if (!mass_w) { ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr); ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); Kokkos::parallel_for("df_d_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks), KOKKOS_LAMBDA (const team_member team) { const PetscInt myelem = team.league_rank(); // un pack IPData LandauIPReal *IPData_coefs = &d_ipdata_raw[nip*(dim+1)]; LandauIPReal *coef = &IPData_coefs[myelem*Nb*Nf]; Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { const PetscInt ipidx = myQi + myelem * Nq; const PetscReal *const invJj = &d_invJ(ipidx*dim*dim); const PetscReal *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim]; Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int f) { PetscInt b, e, d; PetscScalar refSpaceDer[LANDAU_DIM]; d_f(f,ipidx) = 0.0; for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; for (b = 0; b < Nb; ++b) { const PetscInt cidx = b; d_f(f,ipidx) += Bq[cidx]*coef[f*Nb+cidx]; for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[cidx*dim+d]*coef[f*Nb+cidx]; } for (d = 0; d < dim; ++d) { for (e = 0, d_df(d,f,ipidx) = 0.0; e < dim; ++e) { d_df(d,f,ipidx) += invJj[e*dim+d]*refSpaceDer[e]; } } }); // Nf }); // Nq }); // elems Kokkos::fence(); #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) ierr = PetscLogGpuFlops(nip*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr); #else ierr = PetscLogFlops(nip*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr); #endif ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr); } ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr); ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) ierr = PetscLogGpuFlops(nip*(PetscLogDouble)(mass_w ? (nip*(11*Nf+ 4*dim*dim) + 6*Nf*dim*dim*dim + 10*Nf*dim*dim + 4*Nf*dim + Nb*Nf*Nb*Nq*dim*dim*5) : Nb*Nf*Nb*Nq*4));CHKERRQ(ierr); if (ctx->deviceType == LANDAU_CPU) PetscInfo(plex, "Warning: Landau selected CPU but no support for Kokkos using CPU\n"); #else ierr = PetscLogFlops(nip*(PetscLogDouble)(mass_w ? (nip*(11*Nf+ 4*dim*dim) + 6*Nf*dim*dim*dim + 10*Nf*dim*dim + 4*Nf*dim + Nb*Nf*Nb*Nq*dim*dim*5) : Nb*Nf*Nb*Nq*4));CHKERRQ(ierr); #endif Kokkos::parallel_for("Landau_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) { const PetscInt myelem = team.league_rank(); g2_scr_t g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); // we don't use these for mass matrix g3_scr_t g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq); if (!d_mass_w.size()) { g2_scr_t gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); g3_scr_t gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq); LandauIPData d_IPData; // un pack IPData d_IPData.w = &d_ipdata_raw[0]; d_IPData.x = &d_ipdata_raw[1*nip]; d_IPData.y = &d_ipdata_raw[2*nip]; if (dim==2) d_IPData.z = NULL; else d_IPData.z = &d_ipdata_raw[3*nip]; // get g2[] & g3[] Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { using Kokkos::parallel_reduce; const PetscInt jpidx = myQi + myelem * Nq; const PetscReal* const invJj = &d_invJ(jpidx*dim*dim); const PetscReal vj[3] = {d_IPData.x[jpidx], d_IPData.y[jpidx], d_IPData.z ? d_IPData.z[jpidx] : 0}, wj = d_IPData.w[jpidx]; landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)nip), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) { const PetscReal wi = d_IPData.w[ipidx], x = d_IPData.x[ipidx], y = d_IPData.y[ipidx]; PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; PetscInt fieldA,d2,d3; #if LANDAU_DIM==2 PetscReal Ud[2][2], Uk[2][2]; LandauTensor2D(vj, x, y, Ud, Uk, (ipidx==jpidx) ? 0. : 1.); #else PetscReal U[3][3], z = d_IPData.z[ipidx]; LandauTensor3D(vj, x, y, z, U, (ipidx==jpidx) ? 0. : 1.); #endif for (fieldA = 0; fieldA < Nf; ++fieldA) { temp1[0] += d_df(0,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; temp1[1] += d_df(1,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; #if LANDAU_DIM==3 temp1[2] += d_df(2,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; #endif temp2 += d_f(fieldA,ipidx)*d_beta[fieldA]; } temp1[0] *= wi; temp1[1] *= wi; #if LANDAU_DIM==3 temp1[2] *= wi; #endif temp2 *= wi; #if LANDAU_DIM==2 for (d2 = 0; d2 < 2; d2++) { for (d3 = 0; d3 < 2; ++d3) { /* K = U * grad(f): g2=e: i,A */ ggg.gg2[d2] += Uk[d2][d3]*temp1[d3]; /* D = -U * (I \kron (fx)): g3=f: i,j,A */ ggg.gg3[d2][d3] += Ud[d2][d3]*temp2; } } #else for (d2 = 0; d2 < 3; ++d2) { for (d3 = 0; d3 < 3; ++d3) { /* K = U * grad(f): g2 = e: i,A */ ggg.gg2[d2] += U[d2][d3]*temp1[d3]; /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ ggg.gg3[d2][d3] += U[d2][d3]*temp2; } } #endif }, Kokkos::Sum(gg_temp)); // if (myelem==0) printf("\t:%d.%d) temp gg3=%e %e %e %e\n",myelem,myQi,gg_temp.gg3[0][0],gg_temp.gg3[1][0],gg_temp.gg3[0][1],gg_temp.gg3[1][1]); // add alpha and put in gg2/3 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) { PetscInt d2,d3; for (d2 = 0; d2 < dim; d2++) { gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA]; //if (myelem==0 && fieldA==1) printf("\t\t:%d.%d) gg2[%d]=%e (+= %e)\n",myelem,myQi,d2,gg2(d2,fieldA,myQi),gg_temp.gg2[d2]*d_alpha[fieldA]); //gg2[d2][myQi][fieldA] += gg_temp.gg2[d2]*d_alpha[fieldA]; for (d3 = 0; d3 < dim; d3++) { //gg3[d2][d3][myQi][fieldA] -= gg_temp.gg3[d2][d3]*d_alpha[fieldA]*s_invMass[fieldA]; gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA]*d_invMass[fieldA]; //if (myelem==0 && fieldA==1) printf("\t\t\t:%d.%d) gg3[%d][%d]=%e\n",myelem,myQi,d2,d3,gg3(d2,d3,fieldA,myQi)); } } }); /* add electric field term once per IP */ Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) { //gg.gg2[fieldA][dim-1] += d_Eq_m[fieldA]; gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA]; }); // Kokkos::single(Kokkos::PerThread(team), [&]() { Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [=] (const int& fieldA) { int d,d2,d3,dp; //printf("%d %d %d gg2[][1]=%18.10e\n",myelem,myQi,fieldA,gg.gg2[fieldA][dim-1]); /* Jacobian transform - g2, g3 - per thread (2D) */ for (d = 0; d < dim; ++d) { g2(d,fieldA,myQi) = 0; for (d2 = 0; d2 < dim; ++d2) { g2(d,fieldA,myQi) += invJj[d*dim+d2]*gg2(d2,fieldA,myQi); //if (myelem==0 && myQi==0) printf("\t:g2[%d][%d][%d]=%e. %e %e\n",(int)myQi,(int)fieldA,(int)d,g2(fieldA,myQi,d),invJj[d*dim+d2],gg.gg2[fieldA][d2]); g3(d,d2,fieldA,myQi) = 0; for (d3 = 0; d3 < dim; ++d3) { for (dp = 0; dp < dim; ++dp) { g3(d,d2,fieldA,myQi) += invJj[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJj[d2*dim + dp]; //printf("\t%d %d %d %d %d %d %d g3=%g wj=%g g3 = %g * %g * %g\n",myelem,myQi,fieldA,d,d2,d3,dp,g3(fieldA,myQi,d,d2),wj,invJj[d*dim + d3],gg.gg3[fieldA][d3][dp],invJj[d2*dim + dp]); } } g3(d,d2,fieldA,myQi) *= wj; } g2(d,fieldA,myQi) *= wj; } }); }); // Nq team.team_barrier(); } // Jacobian /* assemble */ //Kokkos::single(Kokkos::PerTeam(team), [&]() { Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int blk_i) { Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int fieldA) { int blk_j,qj,d,d2; const PetscInt i = fieldA*Nb + blk_i; /* Element matrix row */ for (blk_j = 0; blk_j < Nb; ++blk_j) { const PetscInt j = fieldA*Nb + blk_j; /* Element matrix column */ const PetscInt fOff = i*totDim + j; PetscScalar t = global_elem_mat_sz ? d_elem_mats(myelem,fOff) : 0; for (qj = 0 ; qj < Nq ; qj++) { // look at others integration points const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim]; if (!d_mass_w.size()) { for (d = 0; d < dim; ++d) { t += DIq[blk_i*dim+d]*g2(d,fieldA,qj)*BJq[blk_j]; for (d2 = 0; d2 < dim; ++d2) { t += DIq[blk_i*dim + d]*g3(d,d2,fieldA,qj)*DIq[blk_j*dim + d2]; } } } else { const PetscInt jpidx = qj + myelem * Nq; t += BJq[blk_i] * d_mass_w(jpidx)*shift * BJq[blk_j]; //printf("\tmat[%d %d %d %d %d]: B=%g w=%g shift=%g B=%g\n",myelem,fOff,fieldA,qj,d,BJq[blk_i],d_mass_w(jpidx),shift,BJq[blk_j]); } } if (global_elem_mat_sz) d_elem_mats(myelem,fOff) = t; // can set this because local element matrix[fOff] else { PetscErrorCode ierr = 0; PetscScalar vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE],row_scale[LANDAU_MAX_Q_FACE],col_scale[LANDAU_MAX_Q_FACE]; PetscInt q,idx,nr,nc,rows0[LANDAU_MAX_Q_FACE],cols0[LANDAU_MAX_Q_FACE],rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE]; const LandauIdx *const Idxs = &d_maps->gIdx[myelem][fieldA][0]; idx = Idxs[blk_i]; if (idx >= 0) { nr = 1; rows0[0] = idx; row_scale[0] = 1.; } else { idx = -idx - 1; nr = d_maps->num_face; for (q = 0; q < d_maps->num_face; q++) { rows0[q] = d_maps->c_maps[idx][q].gid; row_scale[q] = d_maps->c_maps[idx][q].scale; } } idx = Idxs[blk_j]; if (idx >= 0) { nc = 1; cols0[0] = idx; col_scale[0] = 1.; } else { idx = -idx - 1; nc = d_maps->num_face; for (q = 0; q < d_maps->num_face; q++) { cols0[q] = d_maps->c_maps[idx][q].gid; col_scale[q] = d_maps->c_maps[idx][q].scale; } } for (q = 0; q < nr; q++) rows[q] = rows0[q]; for (q = 0; q < nc; q++) cols[q] = cols0[q]; for (q = 0; q < nr; q++) { for (d = 0; d < nc; d++) { vals[q*nc + d] = row_scale[q]*col_scale[d]*t; } } MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES,&ierr); if (ierr) return; } } }); }); }); Kokkos::fence(); ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr); if (global_elem_mat_sz) { Kokkos::View::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr); Kokkos::deep_copy (h_elem_mats, d_elem_mats); ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr); ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr); PetscInt ej; for (ej = cStart ; ej < cEnd; ++ej) { const PetscScalar *elMat = &h_elem_mats(ej-cStart,0); ierr = DMPlexMatSetClosure(plex, section, globalSection, JacP, ej, elMat, ADD_VALUES);CHKERRQ(ierr); if (ej==-1) { int d,f; PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)numCells); for (d = 0; d < totDim; ++d){ for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e", PetscRealPart(elMat[d*totDim + f])); PetscPrintf(PETSC_COMM_SELF,"\n"); } } } ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr); } } PetscFunctionReturn(0); } } // extern "C"