#include <../src/vec/is/sf/impls/basic/sfpack.h> #include <../src/vec/is/sf/impls/basic/sfbasic.h> /* Convenience local types */ #if defined(PETSC_HAVE_MPI_LARGE_COUNT) && defined(PETSC_USE_64BIT_INDICES) typedef MPI_Count PetscSFCount; typedef MPI_Aint PetscSFAint; #else typedef PetscMPIInt PetscSFCount; typedef PetscMPIInt PetscSFAint; #endif typedef struct { SFBASICHEADER; MPI_Comm comms[2]; /* Communicators with distributed topology in both directions */ PetscBool initialized[2]; /* Are the two communicators initialized? */ PetscSFCount *rootcounts, *leafcounts; /* counts for non-distinguished ranks */ PetscSFAint *rootdispls, *leafdispls; /* displs for non-distinguished ranks */ PetscMPIInt *rootweights, *leafweights; PetscInt rootdegree, leafdegree; } PetscSF_Neighbor; /*===================================================================================*/ /* Internal utility routines */ /*===================================================================================*/ static inline PetscErrorCode PetscLogMPIMessages(PetscInt nsend, PetscSFCount *sendcnts, MPI_Datatype sendtype, PetscInt nrecv, PetscSFCount *recvcnts, MPI_Datatype recvtype) { PetscFunctionBegin; if (PetscDefined(USE_LOG)) { petsc_isend_ct += (PetscLogDouble)nsend; petsc_irecv_ct += (PetscLogDouble)nrecv; if (sendtype != MPI_DATATYPE_NULL) { PetscMPIInt i, typesize; PetscCallMPI(MPI_Type_size(sendtype, &typesize)); for (i = 0; i < nsend; i++) petsc_isend_len += (PetscLogDouble)(sendcnts[i] * typesize); } if (recvtype != MPI_DATATYPE_NULL) { PetscMPIInt i, typesize; PetscCallMPI(MPI_Type_size(recvtype, &typesize)); for (i = 0; i < nrecv; i++) petsc_irecv_len += (PetscLogDouble)(recvcnts[i] * typesize); } } PetscFunctionReturn(PETSC_SUCCESS); } /* Get the communicator with distributed graph topology, which is not cheap to build so we do it on demand (instead of at PetscSFSetUp time) */ static PetscErrorCode PetscSFGetDistComm_Neighbor(PetscSF sf, PetscSFDirection direction, MPI_Comm *distcomm) { PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; PetscInt nrootranks, ndrootranks, nleafranks, ndleafranks; const PetscMPIInt *rootranks, *leafranks; MPI_Comm comm; PetscFunctionBegin; PetscCall(PetscSFGetRootInfo_Basic(sf, &nrootranks, &ndrootranks, &rootranks, NULL, NULL)); /* Which ranks will access my roots (I am a destination) */ PetscCall(PetscSFGetLeafInfo_Basic(sf, &nleafranks, &ndleafranks, &leafranks, NULL, NULL, NULL)); /* My leaves will access whose roots (I am a source) */ if (!dat->initialized[direction]) { const PetscMPIInt indegree = nrootranks - ndrootranks, *sources = rootranks + ndrootranks; const PetscMPIInt outdegree = nleafranks - ndleafranks, *destinations = leafranks + ndleafranks; MPI_Comm *mycomm = &dat->comms[direction]; PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); if (direction == PETSCSF_LEAF2ROOT) { PetscCallMPI(MPI_Dist_graph_create_adjacent(comm, indegree, sources, dat->rootweights, outdegree, destinations, dat->leafweights, MPI_INFO_NULL, 1 /*reorder*/, mycomm)); } else { /* PETSCSF_ROOT2LEAF, reverse src & dest */ PetscCallMPI(MPI_Dist_graph_create_adjacent(comm, outdegree, destinations, dat->leafweights, indegree, sources, dat->rootweights, MPI_INFO_NULL, 1 /*reorder*/, mycomm)); } dat->initialized[direction] = PETSC_TRUE; } *distcomm = dat->comms[direction]; PetscFunctionReturn(PETSC_SUCCESS); } /*===================================================================================*/ /* Implementations of SF public APIs */ /*===================================================================================*/ static PetscErrorCode PetscSFSetUp_Neighbor(PetscSF sf) { PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; PetscInt i, j, nrootranks, ndrootranks, nleafranks, ndleafranks; const PetscInt *rootoffset, *leafoffset; PetscMPIInt m, n; PetscFunctionBegin; /* SFNeighbor inherits from Basic */ PetscCall(PetscSFSetUp_Basic(sf)); /* SFNeighbor specific */ sf->persistent = PETSC_FALSE; PetscCall(PetscSFGetRootInfo_Basic(sf, &nrootranks, &ndrootranks, NULL, &rootoffset, NULL)); PetscCall(PetscSFGetLeafInfo_Basic(sf, &nleafranks, &ndleafranks, NULL, &leafoffset, NULL, NULL)); dat->rootdegree = m = (PetscMPIInt)(nrootranks - ndrootranks); dat->leafdegree = n = (PetscMPIInt)(nleafranks - ndleafranks); sf->nleafreqs = 0; dat->nrootreqs = 1; /* Only setup MPI displs/counts for non-distinguished ranks. Distinguished ranks use shared memory */ PetscCall(PetscMalloc6(m, &dat->rootdispls, m, &dat->rootcounts, m, &dat->rootweights, n, &dat->leafdispls, n, &dat->leafcounts, n, &dat->leafweights)); #if defined(PETSC_HAVE_MPI_LARGE_COUNT) && defined(PETSC_USE_64BIT_INDICES) for (i = ndrootranks, j = 0; i < nrootranks; i++, j++) { dat->rootdispls[j] = rootoffset[i] - rootoffset[ndrootranks]; dat->rootcounts[j] = rootoffset[i + 1] - rootoffset[i]; dat->rootweights[j] = (PetscMPIInt)((PetscReal)dat->rootcounts[j] / (PetscReal)PETSC_MAX_INT * 2147483647); /* Scale to range of PetscMPIInt */ } for (i = ndleafranks, j = 0; i < nleafranks; i++, j++) { dat->leafdispls[j] = leafoffset[i] - leafoffset[ndleafranks]; dat->leafcounts[j] = leafoffset[i + 1] - leafoffset[i]; dat->leafweights[j] = (PetscMPIInt)((PetscReal)dat->leafcounts[j] / (PetscReal)PETSC_MAX_INT * 2147483647); } #else for (i = ndrootranks, j = 0; i < nrootranks; i++, j++) { PetscCall(PetscMPIIntCast(rootoffset[i] - rootoffset[ndrootranks], &m)); dat->rootdispls[j] = m; PetscCall(PetscMPIIntCast(rootoffset[i + 1] - rootoffset[i], &n)); dat->rootcounts[j] = n; dat->rootweights[j] = n; } for (i = ndleafranks, j = 0; i < nleafranks; i++, j++) { PetscCall(PetscMPIIntCast(leafoffset[i] - leafoffset[ndleafranks], &m)); dat->leafdispls[j] = m; PetscCall(PetscMPIIntCast(leafoffset[i + 1] - leafoffset[i], &n)); dat->leafcounts[j] = n; dat->leafweights[j] = n; } #endif PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFReset_Neighbor(PetscSF sf) { PetscInt i; PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; PetscFunctionBegin; PetscCheck(!dat->inuse, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Outstanding operation has not been completed"); PetscCall(PetscFree6(dat->rootdispls, dat->rootcounts, dat->rootweights, dat->leafdispls, dat->leafcounts, dat->leafweights)); for (i = 0; i < 2; i++) { if (dat->initialized[i]) { PetscCallMPI(MPI_Comm_free(&dat->comms[i])); dat->initialized[i] = PETSC_FALSE; } } PetscCall(PetscSFReset_Basic(sf)); /* Common part */ PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFDestroy_Neighbor(PetscSF sf) { PetscFunctionBegin; PetscCall(PetscSFReset_Neighbor(sf)); PetscCall(PetscFree(sf->data)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFBcastBegin_Neighbor(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) { PetscSFLink link; PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; MPI_Comm distcomm = MPI_COMM_NULL; void *rootbuf = NULL, *leafbuf = NULL; MPI_Request *req; PetscFunctionBegin; PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_BCAST, &link)); PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata)); /* Do neighborhood alltoallv for remote ranks */ PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); PetscCall(PetscSFGetDistComm_Neighbor(sf, PETSCSF_ROOT2LEAF, &distcomm)); PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL)); PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_ROOT2LEAF)); /* OpenMPI-3.0 ran into error with rootdegree = leafdegree = 0, so we skip the call in this case */ if (dat->rootdegree || dat->leafdegree) PetscCallMPI(MPIU_Ineighbor_alltoallv(rootbuf, dat->rootcounts, dat->rootdispls, unit, leafbuf, dat->leafcounts, dat->leafdispls, unit, distcomm, req)); PetscCall(PetscLogMPIMessages(dat->rootdegree, dat->rootcounts, unit, dat->leafdegree, dat->leafcounts, unit)); PetscCall(PetscSFLinkScatterLocal(sf, link, PETSCSF_ROOT2LEAF, (void *)rootdata, leafdata, op)); PetscFunctionReturn(PETSC_SUCCESS); } static inline PetscErrorCode PetscSFLeafToRootBegin_Neighbor(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op, PetscSFOperation sfop, PetscSFLink *out) { PetscSFLink link; PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; MPI_Comm distcomm = MPI_COMM_NULL; void *rootbuf = NULL, *leafbuf = NULL; MPI_Request *req = NULL; PetscFunctionBegin; PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, sfop, &link)); PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); /* Do neighborhood alltoallv for remote ranks */ PetscCall(PetscSFLinkCopyLeafBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); PetscCall(PetscSFGetDistComm_Neighbor(sf, PETSCSF_LEAF2ROOT, &distcomm)); PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_LEAF2ROOT, &rootbuf, &leafbuf, &req, NULL)); PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_LEAF2ROOT)); if (dat->rootdegree || dat->leafdegree) PetscCallMPI(MPIU_Ineighbor_alltoallv(leafbuf, dat->leafcounts, dat->leafdispls, unit, rootbuf, dat->rootcounts, dat->rootdispls, unit, distcomm, req)); PetscCall(PetscLogMPIMessages(dat->leafdegree, dat->leafcounts, unit, dat->rootdegree, dat->rootcounts, unit)); *out = link; PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFReduceBegin_Neighbor(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) { PetscSFLink link = NULL; PetscFunctionBegin; PetscCall(PetscSFLeafToRootBegin_Neighbor(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op, PETSCSF_REDUCE, &link)); PetscCall(PetscSFLinkScatterLocal(sf, link, PETSCSF_LEAF2ROOT, rootdata, (void *)leafdata, op)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFFetchAndOpBegin_Neighbor(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, void *leafupdate, MPI_Op op) { PetscSFLink link = NULL; PetscFunctionBegin; PetscCall(PetscSFLeafToRootBegin_Neighbor(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op, PETSCSF_FETCH, &link)); PetscCall(PetscSFLinkFetchAndOpLocal(sf, link, rootdata, leafdata, leafupdate, op)); PetscFunctionReturn(PETSC_SUCCESS); } static PetscErrorCode PetscSFFetchAndOpEnd_Neighbor(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) { PetscSFLink link = NULL; MPI_Comm comm = MPI_COMM_NULL; PetscSF_Neighbor *dat = (PetscSF_Neighbor *)sf->data; void *rootbuf = NULL, *leafbuf = NULL; PetscFunctionBegin; PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); PetscCall(PetscSFLinkFinishCommunication(sf, link, PETSCSF_LEAF2ROOT)); /* Process remote fetch-and-op */ PetscCall(PetscSFLinkFetchAndOpRemote(sf, link, rootdata, op)); /* Bcast the updated rootbuf back to leaves */ PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); PetscCall(PetscSFGetDistComm_Neighbor(sf, PETSCSF_ROOT2LEAF, &comm)); PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, NULL, NULL)); PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_ROOT2LEAF)); if (dat->rootdegree || dat->leafdegree) PetscCallMPI(MPIU_Neighbor_alltoallv(rootbuf, dat->rootcounts, dat->rootdispls, unit, leafbuf, dat->leafcounts, dat->leafdispls, unit, comm)); PetscCall(PetscLogMPIMessages(dat->rootdegree, dat->rootcounts, unit, dat->leafdegree, dat->leafcounts, unit)); PetscCall(PetscSFLinkCopyLeafBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_FALSE /* host2device after recving */)); PetscCall(PetscSFLinkUnpackLeafData(sf, link, PETSCSF_REMOTE, leafupdate, MPI_REPLACE)); PetscCall(PetscSFLinkReclaim(sf, &link)); PetscFunctionReturn(PETSC_SUCCESS); } PETSC_INTERN PetscErrorCode PetscSFCreate_Neighbor(PetscSF sf) { PetscSF_Neighbor *dat; PetscFunctionBegin; sf->ops->CreateEmbeddedRootSF = PetscSFCreateEmbeddedRootSF_Basic; sf->ops->BcastEnd = PetscSFBcastEnd_Basic; sf->ops->ReduceEnd = PetscSFReduceEnd_Basic; sf->ops->GetLeafRanks = PetscSFGetLeafRanks_Basic; sf->ops->View = PetscSFView_Basic; sf->ops->SetUp = PetscSFSetUp_Neighbor; sf->ops->Reset = PetscSFReset_Neighbor; sf->ops->Destroy = PetscSFDestroy_Neighbor; sf->ops->BcastBegin = PetscSFBcastBegin_Neighbor; sf->ops->ReduceBegin = PetscSFReduceBegin_Neighbor; sf->ops->FetchAndOpBegin = PetscSFFetchAndOpBegin_Neighbor; sf->ops->FetchAndOpEnd = PetscSFFetchAndOpEnd_Neighbor; PetscCall(PetscNew(&dat)); sf->data = (void *)dat; PetscFunctionReturn(PETSC_SUCCESS); }