Changes in .gitignore

7ecf6641c340caefd7fa9f7fc7a6efebf89ae19d - Merge MR !153, 'jrwrigh/checkbadSource', into 'main'

Fri, 26 Sep 2025 17:13:42 +0000

Merge MR !153, 'jrwrigh/checkbadSource', into 'main'style: Add checkbadSourceSee merge request phypid/honee!153 List of files: /honee/.gitignore

1efe7de241b13cc63b410cf908df306ea8c3d55a - style: Add checkbadSource

Fri, 26 Sep 2025 16:40:42 +0000

style: Add checkbadSourceModified from PETSc's checkbadSource List of files: /honee/.gitignore

0ab92d04a64a32c443fd56bb6fb1384c5cf85c14 - Merge branch 'jrwrigh/fix_compiler_warnings' into 'main'

Fri, 28 Jun 2024 17:45:46 +0000

Merge branch 'jrwrigh/fix_compiler_warnings' into 'main'fix: Address GCC compiler warningsSee merge request phypid/honee!14 List of files: /honee/.gitignore

63faaa0527df52564db2be231ae1f49dab6c3efd - chore: Add *.json, others to .gitignore

Fri, 28 Jun 2024 17:13:11 +0000

chore: Add *.json, others to .gitignoreMostly for ignoring `compile_commands.json`, but presumably useful forother things too List of files: /honee/.gitignore

02e7dc5c683ed2638684b2b258e5f0f564852bde - Merge branch 'jrwrigh/make_docs' into 'main'

Wed, 26 Jun 2024 17:35:52 +0000

Merge branch 'jrwrigh/make_docs' into 'main'Enable documenatation buildingSee merge request phypid/honee!5 List of files: /honee/.gitignore

965d9f743f86785935177ec2ff1624a7b09e04f8 - doc: Get documentation running

Tue, 25 Jun 2024 22:48:44 +0000

doc: Get documentation running List of files: /honee/.gitignore

0006be33bc3a095c7a40443db044019362bd3e1c - chore: Get tests back up and running

Mon, 24 Jun 2024 22:40:27 +0000

chore: Get tests back up and running List of files: /honee/.gitignore

d1b9ef12923730ac357e6e30d052a0445e411f3e - Fluids - Minor Refactor (#995)

Sat, 23 Jul 2022 01:11:53 +0000

Fluids - Minor Refactor (#995)* Fluids - remove *.bin* since it exists in libCEED/.gitignore * cleanup * WIP: Fluids - use FluxInviscid_fwd() for computing the flux jacobean strong_conv is not reproduced and stab is not computed correctly * WIP: working on variational notation for stabilization * Fluids - fix missing parts after rebasing onto main * Fluids - fix SU in the IFunction * Fluids - refactor stabilization * Fluids - move stab helper functions to stabilization.h * Fluids - minor style * Fluids - minor refactor * Fluids - add regression test for primitive variables * Fluids - use UnpackState_*() * Fluids - more refactoring of stabilization * Fluids - DC: use utility functions * Fluids - refactor total flux * Fluids - minor cleanup * Fluids - set x[0] = 0 for channel to exclude gravitational potential * Fluids - updated stabilization.h * Fluids - zero strong_conv before pass it to FluxInviscidStrong() to be safe * Fluids - move switch-case for STAB to a helper function * Fluids - rename Y -> R in Stabilization*() * Fluids - fix stab sign in RHS Co-authored-by: Jed Brown List of files: /honee/.gitignore

887fa3f23b907e780b1cd3fff72b368cbab79bd3 - examples/fluids: added *.csv to gitignore

Tue, 26 Jan 2021 15:14:51 +0000

examples/fluids: added *.csv to gitignore List of files: /honee/.gitignore

41a0a6d4cf0cdec4ead4426b1f6a4fc2af41eba7 - gitignore: adding *.png for ignoring convergence plots

Tue, 22 Dec 2020 18:00:39 +0000

gitignore: adding *.png for ignoring convergence plots List of files: /honee/.gitignore

0406eb15b4d4773a2dca4875796532773d769d27 - examples/fluids: added a bash file to get verification test results in .log files. TODO: add test flags to be able to change the test setup through run time arguments.

Sun, 23 Aug 2020 17:34:29 +0000

examples/fluids: added a bash file to get verification test results in .log files. TODO: add test flags to be able to change the test setup through run time arguments. List of files: /honee/.gitignore

ea10196cf2e94f62e536128a7e81e92b8513ac15 - Solid Mechanics Example (#474)

Thu, 26 Mar 2020 21:03:55 +0000

Solid Mechanics Example (#474)libCEED + PETSc Solid Mechanics example Co-authored-by: Jeremy L Thompson Co-authored-by: Arash Mehraban Co-authored-by: Jed Brown Co-authored-by: Valeria Barra * Solids - initial commit of elasticity example Co-authored-by: Jeremy L Thompson Co-authored-by: Arash Mehraban * Solids - add VLA macro * Solids - fix test for mesh file output string * Solids - update documentation Co-authored-by: Jeremy L Thompson Co-authored-by: Arash Mehraban * Solids - update README * Solids - update ctx struct and casting for CUDA * Tests - clean up test conditions for GPU backends * GPU - fix falbacks identified * CUDA - whitelist FDM Inverse * make style * doc: solids editing/correctness * Solids - separate FE boilerplate into its own function * Solids - clean up double includes * doc: add more complete explanation of hyperelasticity and formulation * Solids - Use ISGetSize for global number of face sets (had no effect on PETSc bug in MR 2615) * edited docs for hyperFS * Improve doc of solids example with some constitent notation and fonts * HyperSS docs modified * edited typo * linearization added * fixed a typo * Improved doc * doc: more writing on hyperelasticity and implementation tradeoffs * Solids - fix typo * Solids - compute and store C, Cinv, and S as symmetric * Solids - use new Newton linearization, but its not converging * Solids - update BC handling * Solids - update README with new BC options * removed old notation * Solids - whitespace changes only in documentation * doc: adjust differential notation and derive dP(dF) * Solids - small documentation flow edits * Solids - simplify setting BCs * Solids - Symmetritize e in SS * Solids - set more reasonable default number of steps for nonlinear * Solids - fix documentation typo * Solids - clean up computation of deltaS * Solids - fix sample runs * Solids - fix hyperSS jacobian * Solids - fix hyperSS documentation * Solids - clean up code for hyperSS * Solids - add file and function docstrings * doc: commutative diagram of linearization and stable stress expression * Solids - update hyperSS documentation with linearization * doc: further tips on stable computation * Solids - fix typo with trace in hyperSS * Solids - intro and hyperSS documentation updates * Solids - update hyperFS for numerical stability with small E and nearly incompressible * examples/solids: simpler C = I + 2E * Solids - more compact/readable E computation * Solids - minor style consistency change * Solids - replace log1p with series approximation, log1p is not vectorized in libc * Solids - refactor common components between hyperFSF and hyperFSdF * examples/solids: use PETSc dependency flags for incremental rebuild * examples/solids: extend range of log1p_series via shift/scale * Solids - add bc_clamp_max option to specify maximum displacement for clamped boundary * make style * Solids - update with sample run informantion and spellchecking * Doc - typo fixes * Solids - homogonize presentation of command line options * examples/solids: fix -Wmisleading-indentation * examples/fluids: PETSc 3.13 compatibility * examples/solids: use log1p for numerical stability in hyperSS * doc: copy editing in examples/solids * Solids - update documentation on running the code * Solids - convert README to rst and include in documentation * Solids - clean dependency file * Solids - use log1p approximation in hyperSS as well * Solids - update README to explain mms * Solids - switch range on hyperSS log1p series approximation * Solids - update README to clarify mandatory options * Solids - add link to sample meshes * Solids - simplify listing of mesh options * Travis - use newer PETSc * Solids - update sample run to list [.exo file] instead of name of sample mesh * Solids - update make clean to remove src/*.d * examples/solids: makefile cleanup * make style * doc examples/solids: clean up and explain nondimensionalization * examples/solids: document algebraic solver * examples/solids: use CG for Chebyshev eig estimation * doc: fix references to examples/fluids * Solids - remove mesh folder * Solids - drop expicit ExodusII requirement, PETSc supports many types of meshes * doc: mention PETSc --download-exodusii for Exodus * doc: fix latexpdf * Fix \longrightarrow rendering in PDF * Solids - fix toctree link to README for pdflatex * Examples and BPs Docs: Homogenize math with dS and dV and other tiny esthetics * Solids - fix unshifted series for hyperSS log1p * Improve doc of bpssphere: Add differential for consistency with all other examples and explain domain for clarity * Solids - include sample mesh image * Move mesh figure after note and slightly rename inclusion marker Co-authored-by: Arash Mehraban Co-authored-by: Jed Brown Co-authored-by: valeriabarra List of files: /honee/.gitignore