Changes in requirements.txt

b4e8f36611be7afa0ac740a4e69c9edbf766dc7e - Merge pull request #1792 from CEED/jed/runtime-config

Wed, 26 Mar 2025 21:45:51 +0000

Merge pull request #1792 from CEED/jed/runtime-configAdd run-time interface for build-time configuration List of files: /libCEED/doc/sphinx/requirements.txt

fd27ce53f063357d4a24dac1b435f98ba46cb3f8 - doc: upgrade Python packages

Sat, 22 Mar 2025 05:38:12 +0000

doc: upgrade Python packages List of files: /libCEED/doc/sphinx/requirements.txt

2f25868455596f24da4d0c2a45978699d105e4dd - Merge pull request #1215 from CEED/jed/altair-sphinxext

Mon, 15 May 2023 15:47:34 +0000

Merge pull request #1215 from CEED/jed/altair-sphinxextdoc: update to altair-5.0 and sphinext-altair List of files: /libCEED/doc/sphinx/requirements.txt

c70a677ffe38ebccc3bd6f00f9d560759c662f96 - doc: update to altair-5.0 and sphinext-altair

Sat, 13 May 2023 23:18:34 +0000

doc: update to altair-5.0 and sphinext-altairhttps://github.com/altair-viz/altair/issues/3051#issuecomment-1546730887 List of files: /libCEED/doc/sphinx/requirements.txt

b12f0bf88cbad497ca25934c4eeac7e42d6506e5 - Merge pull request #1214 from CEED/jeremy/pin-altair

Thu, 11 May 2023 18:37:43 +0000

Merge pull request #1214 from CEED/jeremy/pin-altairTemporary Altair doc fix List of files: /libCEED/doc/sphinx/requirements.txt

60582ab9b3ef171ccadb118aa08c7babfe040fa4 - doc - pin Altair <5.0 until Sphinx updates

Thu, 11 May 2023 18:19:44 +0000

doc - pin Altair <5.0 until Sphinx updates List of files: /libCEED/doc/sphinx/requirements.txt

05b44d1b5ea8b564ccb88bb14760c6e7ef0ad51a - Merge pull request #1162 from CEED/jed/doc-update-packages

Tue, 21 Feb 2023 20:49:07 +0000

Merge pull request #1162 from CEED/jed/doc-update-packagesdoc: update packages List of files: /libCEED/doc/sphinx/requirements.txt

c5d0f99595ca9b554c7cfa8252936d76dafb0ce5 - doc: upgrade versions and fix @param variables

Tue, 21 Feb 2023 17:39:07 +0000

doc: upgrade versions and fix @param variables List of files: /libCEED/doc/sphinx/requirements.txt

dd75fd25173ccc390ac3dae7b2b394bf6101854f - doc: switch from sphinx-panels (deprecated) to sphinx-design (#1161)

Tue, 21 Feb 2023 16:41:04 +0000

doc: switch from sphinx-panels (deprecated) to sphinx-design (#1161) List of files: /libCEED/doc/sphinx/requirements.txt

1c427b21cf84dca14a56d1a05d1739f58da8f21e - Merge pull request #1045 from CEED/jed/fix-docs

Tue, 23 Aug 2022 18:18:15 +0000

Merge pull request #1045 from CEED/jed/fix-docsfix docs List of files: /libCEED/doc/sphinx/requirements.txt

0d627ac128dbf360e78b18bad1cfd2089ff3d6d8 - doc: pin sphinxcontrib-bibtex==2.4.2

Tue, 23 Aug 2022 17:51:11 +0000

doc: pin sphinxcontrib-bibtex==2.4.2We can update to 2.5 when we upgrade to docutils-0.18 (which I thinkneeds sphinx-5). List of files: /libCEED/doc/sphinx/requirements.txt

b36f2af8eb4e779074f4d92faffbc034a6db4539 - Merge pull request #871 from CEED/jeremy/operator-ctx

Tue, 18 Jan 2022 21:28:51 +0000

Merge pull request #871 from CEED/jeremy/operator-ctxop - add ctx setting interface for operators List of files: /libCEED/doc/sphinx/requirements.txt

b81cffb36ae577df5b92a71f852c7d8e69ce1e43 - rtd - pin docutils==0.16 for now, see https://github.com/mcmtroffaes/sphinxcontrib-bibtex

Tue, 18 Jan 2022 21:09:55 +0000

rtd - pin docutils==0.16 for now, see https://github.com/mcmtroffaes/sphinxcontrib-bibtex List of files: /libCEED/doc/sphinx/requirements.txt

73bb2039bcf2cbdfb7a3d65a86f57e7d5e393219 - Merge pull request #865 from CEED/leila/fluid-stab

Fri, 14 Jan 2022 04:37:20 +0000

Merge pull request #865 from CEED/leila/fluid-stabFluids - Fix bug in Stabilization (SU/SUPG) List of files: /libCEED/doc/sphinx/requirements.txt

c38440ba8e6f380155bbbce49ae7c352deac6b44 - doc: upgrade sphinx to support python-3.10; fix {c:struct} reference

Sat, 01 Jan 2022 04:57:33 +0000

doc: upgrade sphinx to support python-3.10; fix {c:struct} reference List of files: /libCEED/doc/sphinx/requirements.txt

cd3003229e5325bdf31f9e102d9fa328f6582fc1 - Merge pull request #703 from CEED/jed/doc-myst-nb

Fri, 13 Aug 2021 23:35:28 +0000

Merge pull request #703 from CEED/jed/doc-myst-nbdoc: replace recommonmark with MyST List of files: /libCEED/doc/sphinx/requirements.txt

bcb2dfae4c301ddfdddf58806f08f6e7d17f4ea5 - doc: replace recommonmark with MyST and migrate ReST to MyST

Thu, 04 Feb 2021 05:01:36 +0000

doc: replace recommonmark with MyST and migrate ReST to MySTThis offers more familiar syntax for most writing, as well as natural$\pi$ math (versus :math:`\pi`) and markdown syntax for all ReSTfeatures.The API doc stubs remain in ReST as recommended for autodoc.https://myst-parser.readthedocs.io/en/latest/sphinx/use.html#use-sphinx-ext-autodoc-in-markdown-filesThe change was largely implemented usinghttps://github.com/executablebooks/rst-to-myst/ with some manualfix-ups. Tables (both ReST built-in tables and list-table) remain undereval-rst until they can be manually updated. List of files: /libCEED/doc/sphinx/requirements.txt

8355605fb12655f53893674f518ac7968aa830ae - Mooney-Rivlin model (#794)

Fri, 30 Jul 2021 21:58:00 +0000

Mooney-Rivlin model (#794)* refactored MR to work with current version of main. Updated doc with dS for MR * fixed documentation formatting * update dS for MR in documentation * cleaning up MR dS equations and wording * minor changes in doc * MR dS draft 1" * MR coded, jacobian diverging * added FSInitial-MR1.h * fixed call option * NH no longer needs mu_1 option * processphysics and upated naming scheme * WIP: Notes on using finite differencing for dS * added print strain at every increment cl option * MR cleaned. started CSV file but not quite there * examples/solids: write csv file can be read using pandas: In [2]: pd.read_csv('test.csv') Out[2]: increment energy 0 0.000000 0.000000 1 0.066667 0.002402 [...] * examples/solids: add targets for CSV logging and Altair chart The MR data is currently hacked because it isn't converging as I'd expect. * fixed style * solids/doc: added derivation of dS for MR * added analytical dS in Jacobian evaluation * fixed style * updated doc and energy plot for MR * MR almost done * started removing integer division * got rid of all integer divisions * missed some 1/3 * remove extra print statement * added coulped MR FSInitial-MRc qfunction * MR coupled version doc update * refactored MR to work with current version of main. Updated doc with dS for MR * fixed documentation formatting * update dS for MR in documentation * cleaning up MR dS equations and wording * minor changes in doc * MR dS draft 1" * MR coded, jacobian diverging * added FSInitial-MR1.h * fixed call option * NH no longer needs mu_1 option * processphysics and upated naming scheme * added print strain at every increment cl option * MR cleaned. started CSV file but not quite there * examples/solids: write csv file can be read using pandas: In [2]: pd.read_csv('test.csv') Out[2]: increment energy 0 0.000000 0.000000 1 0.066667 0.002402 [...] * examples/solids: add targets for CSV logging and Altair chart The MR data is currently hacked because it isn't converging as I'd expect. * fixed style * solids/doc: added derivation of dS for MR * added analytical dS in Jacobian evaluation * fixed style * updated doc and energy plot for MR * MR almost done * started removing integer division * got rid of all integer divisions * missed some 1/3 * fixed some typo * rerunning plot files * Mooney-Rivlin coupled model * some minor changes * Mooney-Rivlin coupled model * some clean-up and update * clean-up, rebased * examples/solids: revise docs/derivation and fix Newton The (fixed) Newton linearization yields an indefinite operator causing Newton to fail (so output/MR-strain1.csv is broken). This can be handled by switching to minres, but a better solution would be nice. * format: added newlines and removed unused/commented code blocks * doc: removed GP model dropdown. * examples/solids: Mooney-Rivlin docs/notation * examples/solids: Mooney-Rivlin notation and experimental configuration * examples/solids: process -dm_plex_box_faces with PETSc main * make style * examples/solids: syntax fix and minor cleanup * make style * doc: fixing Holzapfel ref in Mooney-Rivlin * added TESTARGS for Mooney-Rivlin * fixed TESTARGS for MR * tests/tap.sh: make test for solids examples with names * WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file * examples/solids: add regression tests using expected strain energy * examples/solids: error on MMS with model that does not provide manufactured solutions * examples/solids: fix HIP via CEED_QFUNCTION_HELPER * update in-line comments * changed as Jeremy suggested * examples/solids: make style Co-authored-by: Rezgar Shakeri Co-authored-by: Jed Brown List of files: /libCEED/doc/sphinx/requirements.txt

3d27b5bedc95c5659add228ddc789daf586d4a58 - Merge pull request #708 from CEED/Add_ftr_cur_config

Wed, 31 Mar 2021 21:52:41 +0000

Merge pull request #708 from CEED/Add_ftr_cur_configexamples/solids: add current configuration for residual and Jacobian* Add_ftr_cur_config: examples/solids: Add residual and Jacobian in current configuration Stricter field checking and better error messages List of files: /libCEED/doc/sphinx/requirements.txt

eccc2849f69a9f016cade2e1c45046d05a5ce45c - examples/solids: Add residual and Jacobian in current configuration

Tue, 09 Mar 2021 17:52:48 +0000

examples/solids: Add residual and Jacobian in current configurationThere are some benefits to evaluating residuals and/or Jacobians incurrent configuration. This includes simpler representation of bodyforces and contact, as well as lower storage and lower arithmetic in theJacobian action. We add these implementations as well documentation toderive their representations via linearize-then-pushforward andpushforward-then-linearize.Co-authored-by: Arash Mehraban Co-authored-by: Jed Brown Co-authored-by: Jeremy L. Thompson List of files: /libCEED/doc/sphinx/requirements.txt