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    <title>Changes in references.bib</title>
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    <language>en</language>
    <copyright>Copyright 2025</copyright>
    <generator>Java</generator><item>
        <title>42cd7ab0703ee75581ba9a7f70917ba59a9eee2e - Merge pull request #1189 from CEED/jrwrigh/differential_filter</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#42cd7ab0703ee75581ba9a7f70917ba59a9eee2e</link>
        <description>Merge pull request #1189 from CEED/jrwrigh/differential_filterfluids: Add differential filtering capability

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Mon, 05 Jun 2023 13:11:05 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
    </item>
<item>
        <title>3f89fbfd92bafea25ba9cff7dff42016edddf2b5 - doc(fluids): Add differential filtering</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#3f89fbfd92bafea25ba9cff7dff42016edddf2b5</link>
        <description>doc(fluids): Add differential filtering

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Thu, 06 Apr 2023 00:10:56 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
    </item>
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        <title>5088944b9c8fdd27aff4025c991b58ef4073405a - Merge pull request #1149 from CEED/jrwrigh/newtonian_ddsgs</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#5088944b9c8fdd27aff4025c991b58ef4073405a</link>
        <description>Merge pull request #1149 from CEED/jrwrigh/newtonian_ddsgsfluids: Data-driven SGS modeling

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Wed, 17 May 2023 15:34:36 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>c79d6dc99d9622648a0087f6d685f5dbedbf4309 - doc(fluids): Document SGS, data-driven model</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#c79d6dc99d9622648a0087f6d685f5dbedbf4309</link>
        <description>doc(fluids): Document SGS, data-driven model

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Thu, 23 Mar 2023 22:24:42 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
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        <title>530ad8c4fcac036810a1c230b0a577d30882de6e - Ken/idl (#1138)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#530ad8c4fcac036810a1c230b0a577d30882de6e</link>
        <description>Ken/idl (#1138)* inflow sponge pushing p towards P0 compiles and runs but unknown yet whether it is effective or not* looks like my first attempt at this is missing something as there is negligible effect from Jacobian addition* examples/fluids: IDL fixes and demo* Fix IDL sign error and rename variables/clang-format* Let newtonianwave.yaml use -reference_pressure and temperature* Propagate P0 = reference.pressure* Small tweak to add IDL to the 3 ramp parameters.* fluids: Extract fluids binary vector load function - Needs to be used in multiple places (for ICs and for testing data)* fluids: Correct typo in previous commits* fluids: Add IDL and newtonian wave test* fluids: Rename Newtonian Wave --&gt; Gaussian Wave* fluids: Move RampCoefficient into utils - Also change name to LinearRampCoefficient, as we may have different   kinds of ramps in the future* fluids: Change IDL commandline options* docs(fluids): Document internal damping layerCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* fluids: Add ScaleN QF utility* fluids: Extract InternalDampingLayer QFunction helper---------Co-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;Co-authored-by: KennethEJansen &lt;jansenke@colorado.edu&gt;Co-authored-by: James Wright &lt;james@jameswright.xyz&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Sat, 11 Mar 2023 03:16:47 +0000</pubDate>
        <dc:creator>Kenneth E. Jansen &lt;Kenneth.Jansen@colorado.edu&gt;</dc:creator>
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        <title>d310b3d31eeeddd20725517a3a61881a36d919f0 - Vortex shedding / flow past cylinder  (#1082)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#d310b3d31eeeddd20725517a3a61881a36d919f0</link>
        <description>Vortex shedding / flow past cylinder  (#1082)* add vortex shedding problem* add file for the Qfunctions* add yaml file* update problem setup* update IC qfunc* update problem setup* update initial condition* update yaml file* add mesh file* add vortexshedding to navierstokes.h* register vortexshedding to cloptions.c* update configuration/yaml file* fix Min function* examples/fluids: fix boundary condition labels for cylinder$PhysicalNames62 1 &quot;inlet&quot;2 2 &quot;outlet&quot;2 3 &quot;top&quot;2 4 &quot;bottom&quot;2 5 &quot;cylinderwalls&quot;2 6 &quot;frontandback&quot;$EndPhysicalNames* update QFunctions in navierstokes.c* update data and BC structs in navierstokes.h* update vortexshedding.c* update states* update IC in vortexshedding.h* add freestream BC to cloptions* updates in setuplibceed.c* include freestream BC in example* cleanup duplicate variable names* rename variables as freestream* clean-up some warning messages* clean up example* add cylinder.geo* label physical volume* examples/fluids: fix cylinder mesh and add vortexshedding defaults* update gravity vector* examples/fluids: match domain to Shakib, get vortex street* update to quadratic mesh* clean up yaml file* delete vortexshedding.c and vortexshedding.h* remove vortexshedding from register* update yaml file* examples/fluids: Newtonian &quot;still&quot; initial conditionReinstate outflow boundaries that were previously removed so thatexisting tests can pass.* examples/fluids: freestream inherits reference stateFix freestream context reference counting bug.* examples/fluids: avoid designated initializer in kernel code (breaks CUDA)* add Shakib91 to references* remove cylinder.geo and cylinder.msh* wip:add documentation for vortex shedding* update path to cylinder.msh* add subdirectory for meshes* parameterize cylinder.geo* some fixes in cylinder.geo* Fix cylinder.geo file* examples/fluids: fix up mesh parametrizationFix cylinder size (the function is Sqrt, not sqrt) and parametrizeresolution and aspect.* examples/fluids: fix build after broken merge from main* update Shakib1991 in references* wip:docs for vortex shedding* remove TODO comment* reformulate docs* fix docs* delete cylinder.msh file* work on documentation* add vortex runtime options* examples/fluids: update vortex shedding docs and meshCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Sat, 24 Dec 2022 23:08:56 +0000</pubDate>
        <dc:creator>Adeleke O. Bankole &lt;86932837+AdelekeBankole@users.noreply.github.com&gt;</dc:creator>
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        <title>98e664319f47a6cb95793d45050c650e24fec87b - Merge pull request #1080 from CEED/ade/riemann-bcs</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#98e664319f47a6cb95793d45050c650e24fec87b</link>
        <description>Merge pull request #1080 from CEED/ade/riemann-bcsHLL Flux for Riemann BCs

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Tue, 15 Nov 2022 17:39:21 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>7ec884f8f34c900fabcb0044b3fdd572089cc3b0 - doc(fluids): Add Newtonian Wave, bc_freestream</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#7ec884f8f34c900fabcb0044b3fdd572089cc3b0</link>
        <description>doc(fluids): Add Newtonian Wave, bc_freestream- Also fix citation in the Shock Tube documentation.Co-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Thu, 03 Nov 2022 16:30:40 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
    </item>
<item>
        <title>3c4b7af6bf1a206cad198c63d890a93b5be72708 - Merge branch &apos;main&apos; into jed/fluids-jacobian</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#3c4b7af6bf1a206cad198c63d890a93b5be72708</link>
        <description>Merge branch &apos;main&apos; into jed/fluids-jacobian* main:  Fluids - Add STG inflow (#868)  ci - fix Nek5000 testing

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Mon, 23 May 2022 04:40:50 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
    </item>
<item>
        <title>ba6664ae303f5b2ef46b3df96973d9bdc665107c - Fluids - Add STG inflow (#868)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#ba6664ae303f5b2ef46b3df96973d9bdc665107c</link>
        <description>Fluids - Add STG inflow (#868)* doc(fluids): Add STG equations* doc(fluids): Add basic data flow for STG* doc(fluids): Add Shur et al. 2014 STG paper to bib* doc(fluids): Specify STG inputs files, misc additions* doc(fluids): Add intro for STG section* fix(fluids): Add #include ceed.h for qfunctions - In the spirit of &quot;include what you use&quot;* feat(fluids): Start work on stg_shur14.h* doc-fix: Correct kappa_min definition* Move STG setup functions to problems/stg_shur14* feat: Add cholesky decomposition function* fix: Correct stg_ctx malloc, reorganize creationCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* fix(fluids): Correct return values of functions* style: Fix up style* feat(fluids): Get file paths from PetscOptions - Also convert SetupSTGContext to return PetscErrorCode* fix(fluids): Correct stg_ctx dereferencing - Also move to size_t for type of the offsets* feat(fluids): Add funcs for processing STG*.dat files* feat(fluids): Move to PetscOptions* for STG flags* feat: Use `PetscMax` instead of macro* fix(fluids): Correct/Refactor file reading functions - Move to `PetscSynchronizedFGets` - Remove `inline` - Pass `comm` between functions - Add `OpenPHASTADatFile` to DRY* docs(fluids): Fix equation typo* fix(fluids): Correct calculation of kappa* feat(fluids): Complete STGShur14_Calc* feat(fluids): Add InterpolateProfile helper func* feat(fluids): Add CalcSpectrum helper func* feat(fluids): Add to STGShur14_Calc qfunction* fix: Add M_PI, Update SETERRQ functions- Also update style* fix: Correct interpolation outside of datarange* fix: Add missing definition for ke in CalcSpectrum* feat: Migrate context and func signatures, Misc - Create SetupSTGContext to be run in another Setup_____Context   function - Migrate STGShur14Context, CreateSTGContext, and SetupSTGContext   signatures to navierstokes.h - Add STG contexts to Physics and CeedData - Add missing CHKERRQ to PetscFClose - Move to SPDX license headers* examples/fluids: Pass solution time via context label* feat: Implement STG boundary integral - Add theta0 and implicit members to STGShur14Context - Tested via implementation to the blasius BL problem (though this will   probably go against the code history)* feat: Fix STG Stuff* feat: Implement STG inflow for blasius BL - Note that fluctuations are turned off in this case* examples/fluids: Add stg_mean_only flag* examples/fluids: Check cholesky decomp for nans - Also correct locaiton of cholesky decomposition in ReadSTGInflow()* examples/fluids: Correct STG documentation - Missing a 2 sqrt(3/2) factor and didn&apos;t take square root of q* examples/fluids: Fix STGShur14_Calc - Given the calculated spectrum, calculation of v&apos; and u&apos; verified   against python implementation (which was validated previously against   PHASTA)* examples/fluids: Calc dXdx for boundary QFunctions - Also calculate h from the dXdx in STGShur14_Inflow    - Replace h[0] result with constant dx spacing* examples/fluids: Fix STG Spectra calcualtion* examples/fluids: Fix build errors - Ran into an include cycle collision that resulted in over-defining   SetupContext in advection.c    - newtonian_types.h (which has SetupContext defined) -&gt;      stg_shur14_type.h -&gt; navierstokes.h -&gt; advection.c* examples/fluids: Update and fix documentation* examples/fluids: Correct dXdx comment, leave TODOCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* examples/fluids: Minor bib citation editsCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* examples/fluids: Add STGInflow.dat, fix blasius.yaml* examples/fluids: int -&gt; PetscInt | CeedInt* examples/fluids: Style* examples/fluids: Make Boolean names verb_noun format - Also changes the stg flag to `-stg_use`* examples/fluids: Add STG test* examples/fluids: Style fix up* examples/fluids: Update docs* examples/fluids: Implement weakT option for STG* examples/fluids: Fix casting for ROCm* examples/fluids: avoid PETSc dependency in qfunctions* examples/fluids: header cleanup* backends/hip: avoid redundant inline* examples/fluids: avoid VLA in qfunctionsGPUs don&apos;t like VLA and some compilers reject it when targeting GPUs.* examples/fluids: Create STG_NMODES_MAX* examples/fluids: Refactor stg setup out of blasius.c* examples/fluids: Fix misc GPU bugsCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Sun, 22 May 2022 22:44:21 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
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        <title>019b76820d7ff306c177822c4e76ffe5939c204b - Shock Tube + YZB Discontinuity Capturing (#851)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#019b76820d7ff306c177822c4e76ffe5939c204b</link>
        <description>Shock Tube + YZB Discontinuity Capturing (#851)* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Changed variable name midpt to mid_point, removed redundant slip BC declarations.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Rebased with main* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Implemented fixes to the flux jacobians* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Missed a style fix* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixes to style and documentation.* Fixing unnecessary problem-&gt;dim declaration and missing field in comment describing initial condition density.* Added warnings for incompatible user input combinations.* Added comments on beta to documentation, fixed j_gradn style issues.* Compilation errors on my end. Committing to see if it&apos;s local or not.* Style fixes* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Changed variable name midpt to mid_point, removed redundant slip BC declarations.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Rebased with main* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Implemented fixes to the flux jacobians* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Missed a style fix* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixes to style and documentation.* Fixing unnecessary problem-&gt;dim declaration and missing field in comment describing initial condition density.* Added warnings for incompatible user input combinations.* Added comments on beta to documentation, fixed j_gradn style issues.* Compilation errors on my end. Committing to see if it&apos;s local or not.* Fluids: SETERRQ1 -&gt; SETERRQ to be compatible with PETSc 3.17* Fluids - Update shock-tube with #881* Small fix to mid_point definition and removed repeat entries for Shock Tube problem in README.md.* Including test output.* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Changed variable name midpt to mid_point, removed redundant slip BC declarations.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Rebased with main* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixed style error, made variable names clearer, and removed dead code.* Missed a style fix* Implemented fixes to the flux jacobians* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Missed a style fix* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.* Fixes to style and documentation.* Fixing unnecessary problem-&gt;dim declaration and missing field in comment describing initial condition density.* Added warnings for incompatible user input combinations.* Added comments on beta to documentation, fixed j_gradn style issues.* Compilation errors on my end. Committing to see if it&apos;s local or not.* Fluids: SETERRQ1 -&gt; SETERRQ to be compatible with PETSc 3.17* Fluids - Update shock-tube with #881* Fluids - added test output file for shocktube* Small fix to mid_point definition and removed repeat entries for Shock Tube problem in README.md.* Including test output.* Update doc/sphinx/source/references.bibCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Update examples/fluids/README.mdCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Update examples/fluids/index.mdCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Update examples/fluids/navierstokes.hCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Update examples/fluids/problems/shocktube.cCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Update examples/fluids/qfunctions/shocktube.hCo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;* Removed unused IFunction* Added shocktube variables to SetupContext in advection.h, advection2d.h, and densitycurrent.h* Missed some merge conflicts that have now been cleared up.* Added helper function for covariant element length along a given vector.* Added SetupContext to shocktube.h* Fix to regression test path* remove variable transpose of the Jacobian* Fix index swap in implicit SUPG* examples/fluids shocktube: fix stab summation and transpose* delete IFunction* example/fluids- updates reference solutionCo-authored-by: Timothy Aiken &lt;timothyaiken@Timothys-MacBook-Pro.local&gt;Co-authored-by: Timothy Aiken &lt;timothyaiken@cu-biot-10-10.203.167.69.int.colorado.edu&gt;Co-authored-by: Leila Ghaffari &lt;Leila.Ghaffari@colorado.edu&gt;Co-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;Co-authored-by: Timothy Aiken &lt;timothyaiken@cu-genvpn-tcom-10.180.164.177.int.colorado.edu&gt;Co-authored-by: AdelekeBankole &lt;adeleke.bankole@colorado.edu&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Thu, 05 May 2022 02:08:11 +0000</pubDate>
        <dc:creator>Timothy Aiken &lt;55306867+tt-aiken@users.noreply.github.com&gt;</dc:creator>
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        <title>88626eed6564cd43033d3137230605fb5f962840 - feat: Add blasius boundary layer and channel flow examples to examples/fluids (#942)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#88626eed6564cd43033d3137230605fb5f962840</link>
        <description>feat: Add blasius boundary layer and channel flow examples to examples/fluids (#942)* examples/fluids: Upload current case for collaboration* examples/fluids: Replace developing BL with duct* examples/fluids: Allow density to &quot;float&quot; at inflow* fix: Add u_normal* examples/fluids: bug fix in density flux* examples/fluids: implement &quot;floating&quot; pressure; prescribed u, T* examples/fluids: fixing initializationWe need has_neumann=true to get the weak boundary integrals called. Itis initialized in problem-&gt;setup_ctx and used in SetupLibceed(). This isa hack to always apply.* examples/fluids: include kinetic energy in Blasius IC* examples/fluids: Blasius quasi-2D (slip in z planes)* feat: Add Exact_Channel function* feat: Use Exact_Channel for IC and Inflow* examples/fluids: Add channel example* examples/fluids: Define mu in blasius.c, cleanup* examples/fluid: Add Blasius solution calculator* examples/fluids: Add blasius IC and BCs* Convert to implicit TS* examples/fluids: Update blasius.yaml* Move to ChannelContext, refactor DC and newtonian - Added a dedicated ChannelContext, which allows for user setting of   flow parameters and consistent sharing of parameters between   QFunctions (instead of hardcoding) - Moved density current (DC) specific settings from newtonian.c   densitycurrent.c* Make gravity into vector quantity* Add in body force for channel* examples/fluids: remove explicitly setting coordinate fieldThis is created automatically now by DMPlex and DMProjectCoordinatesbreaks (localized) periodicity, resulting in a tangled mesh.* examples/fluids: transpose flux Jacobian in SUPG stabilization* examples/fluids: update docs commensurate with flux Jacobian transpose fix* examples/fluids: work on docs for tau* examples/fluids: Increase blasius Re, implement Xi to SUPG - Increased the Uinf and mu by 4x for the blasius problem - Implemented the calculation of Xi for the SUPG term in newtonian.h* examples/fluids: Remove flux jacobian transpose - Removed for both eulervortex.h and newtonian.h* examples/fluids: Reset Newtonian unit scaling to neutral - Note that this resets the scaling for the densitycurrent problem,   thus the examples (and possibly tests) will probably need to be   changed* examples/fluids: fix PetscOptionsBegin for new PETSc* feat: Add slanted domain top surface* feat: Add graded mesh option for blasius* fix: Correct inflow boundary condition handling* feat: Move to blasius_context, add CLI options* feat: Move Blasius to physical air properties* fix: Blasius profile and mesh generation - Add the correct float-&gt;int rounding - Fix eta to a value after exceeding the table&apos;s boundsfix: Add fix eta after exceeding table* examples/fluids: Move to physical mu default, fix tests* doc: Add minimum documentation for channel and blasius* examples/fluids: Add primitive jacobian and tau - Also add misc comments* examples/fluids: propose alternative flux Jacobian via prim-to-conservative* examples/fluids: Add PHASTA diagonal tau* fix: Add back in timestep obtaining* examples/fluids: Add analytic tractions to inflow and outflow- This is a stop-gap until viscous flux can be computed properly on the  boundary from current solution.- Tau constants in a state of flux still but this produced a decent v at  inflow and outflow, removing the steep dive caused by forcing  dv/dx=-du/dy from a zero traction of omission.* examples/fluids: CLI options for diagonal c_tau&apos;s* examples/fluids: Update dt via context labels* feat: Add more blasius table points* examples/fluids: Cleanup stab and adjust Ctau_E* examples/fluids: Replace spatial tau with diagonal* examples/fluids: Fix stab in Euler - Initialize `stab` to zero, add sum over loop* examples/fluids: Document diagonal tau formulation* examples/fluids: Fix compiler warnings* examples/fluids: check error codes and elide unused header* examples/fluids: Correct blasius example CLI - Also add mention of the `blasius.yaml` file* examples/fluids: Add supg to default blasius.yaml* examples/fluids: Use yaml for channel and blasius - Instead of long CLI options - Also cleaned up the yaml formatting - Added Cartesian directions to the faceMarker names* examples/fluids: Show example yamls in READMECo-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;Co-authored-by: Kenneth E. Jansen &lt;Kenneth.Jansen@colorado.edu&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Sat, 30 Apr 2022 00:12:39 +0000</pubDate>
        <dc:creator>James Wright &lt;james@jameswright.xyz&gt;</dc:creator>
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        <title>73bb2039bcf2cbdfb7a3d65a86f57e7d5e393219 - Merge pull request #865 from CEED/leila/fluid-stab</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#73bb2039bcf2cbdfb7a3d65a86f57e7d5e393219</link>
        <description>Merge pull request #865 from CEED/leila/fluid-stabFluids - Fix bug in Stabilization (SU/SUPG)

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Fri, 14 Jan 2022 04:37:20 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>c94bf672d90849b4b5f0bff0e3d176986d999ed7 - doc: explain tau for conservative variables</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#c94bf672d90849b4b5f0bff0e3d176986d999ed7</link>
        <description>doc: explain tau for conservative variables

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Tue, 04 Jan 2022 21:04:57 +0000</pubDate>
        <dc:creator>Leila Ghaffari &lt;Leila.Ghaffari@colorado.edu&gt;</dc:creator>
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        <title>89ec833ca8ea730454c87ba0faded44a477a83c8 - Update doc/sphinx/source/references.bib</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#89ec833ca8ea730454c87ba0faded44a477a83c8</link>
        <description>Update doc/sphinx/source/references.bib

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Tue, 04 Jan 2022 15:36:08 +0000</pubDate>
        <dc:creator>Leila Ghaffari &lt;49916147+LeilaGhaffari@users.noreply.github.com&gt;</dc:creator>
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        <title>11dee7dac01d14b61d46cb956df8336868278090 - examples/fluids docs: explain stabilization</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#11dee7dac01d14b61d46cb956df8336868278090</link>
        <description>examples/fluids docs: explain stabilization

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Fri, 31 Dec 2021 22:37:23 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>cd3003229e5325bdf31f9e102d9fa328f6582fc1 - Merge pull request #703 from CEED/jed/doc-myst-nb</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#cd3003229e5325bdf31f9e102d9fa328f6582fc1</link>
        <description>Merge pull request #703 from CEED/jed/doc-myst-nbdoc: replace recommonmark with MyST

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Fri, 13 Aug 2021 23:35:28 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>e8aecbc81cb0c2c1cdb024891566f34293030405 - bib: add DOI</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#e8aecbc81cb0c2c1cdb024891566f34293030405</link>
        <description>bib: add DOI

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Tue, 03 Aug 2021 17:43:01 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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        <title>8355605fb12655f53893674f518ac7968aa830ae - Mooney-Rivlin model (#794)</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#8355605fb12655f53893674f518ac7968aa830ae</link>
        <description>Mooney-Rivlin model (#794)* refactored MR to work with current version of main. Updated doc with dS for MR* fixed documentation formatting* update dS for MR in documentation* cleaning up MR dS equations and wording* minor changes in doc* MR dS draft 1&quot;* MR coded, jacobian diverging* added FSInitial-MR1.h* fixed call option* NH no longer needs mu_1 option* processphysics and upated naming scheme* WIP: Notes on using finite differencing for dS* added print strain at every increment cl option* MR cleaned. started CSV file but not quite there* examples/solids: write csv filecan be read using pandas:In [2]: pd.read_csv(&apos;test.csv&apos;)Out[2]:   increment    energy0   0.000000  0.0000001   0.066667  0.002402[...]* examples/solids: add targets for CSV logging and Altair chartThe MR data is currently hacked because it isn&apos;t converging as I&apos;d expect.* fixed style* solids/doc: added derivation of dS for MR* added analytical dS in Jacobian evaluation* fixed style* updated doc and energy plot for MR* MR almost done* started removing integer division* got rid of all integer divisions* missed some 1/3* remove extra print statement* added coulped MR FSInitial-MRc qfunction* MR coupled version doc update* refactored MR to work with current version of main. Updated doc with dS for MR* fixed documentation formatting* update dS for MR in documentation* cleaning up MR dS equations and wording* minor changes in doc* MR dS draft 1&quot;* MR coded, jacobian diverging* added FSInitial-MR1.h* fixed call option* NH no longer needs mu_1 option* processphysics and upated naming scheme* added print strain at every increment cl option* MR cleaned. started CSV file but not quite there* examples/solids: write csv filecan be read using pandas:In [2]: pd.read_csv(&apos;test.csv&apos;)Out[2]:   increment    energy0   0.000000  0.0000001   0.066667  0.002402[...]* examples/solids: add targets for CSV logging and Altair chartThe MR data is currently hacked because it isn&apos;t converging as I&apos;d expect.* fixed style* solids/doc: added derivation of dS for MR* added analytical dS in Jacobian evaluation* fixed style* updated doc and energy plot for MR* MR almost done* started removing integer division* got rid of all integer divisions* missed some 1/3* fixed some typo* rerunning plot files* Mooney-Rivlin coupled model* some minor changes* Mooney-Rivlin coupled model* some clean-up and update* clean-up, rebased* examples/solids: revise docs/derivation and fix NewtonThe (fixed) Newton linearization yields an indefinite operator causingNewton to fail (so output/MR-strain1.csv is broken). This can be handledby switching to minres, but a better solution would be nice.* format: added newlines and removed unused/commented code blocks* doc: removed GP model dropdown.* examples/solids: Mooney-Rivlin docs/notation* examples/solids: Mooney-Rivlin notation and experimental configuration* examples/solids: process -dm_plex_box_faces with PETSc main* make style* examples/solids: syntax fix and minor cleanup* make style* doc: fixing Holzapfel ref in Mooney-Rivlin* added TESTARGS for Mooney-Rivlin* fixed TESTARGS for MR* tests/tap.sh: make test for solids examples with names* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file* examples/solids: add regression tests using expected strain energy* examples/solids: error on MMS with model that does not provide manufactured solutions* examples/solids: fix HIP via CEED_QFUNCTION_HELPER* update in-line comments* changed as Jeremy suggested* examples/solids: make styleCo-authored-by: Rezgar Shakeri &lt;Rezgar.Shakeri@colorado.edu&gt;Co-authored-by: Jed Brown &lt;jed@jedbrown.org&gt;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Fri, 30 Jul 2021 21:58:00 +0000</pubDate>
        <dc:creator>Karen (Ren) Stengel &lt;karenlstengel@gmail.com&gt;</dc:creator>
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        <title>5ed5e632e1ad8088ccb7464ab7fb923316b7974f - Merge branch &apos;release&apos;</title>
        <link>http://opengrok.kc2vjw.com:8080/history/libCEED/doc/sphinx/source/references.bib#5ed5e632e1ad8088ccb7464ab7fb923316b7974f</link>
        <description>Merge branch &apos;release&apos;

            List of files:
            /libCEED/doc/sphinx/source/references.bib</description>
        <pubDate>Tue, 20 Jul 2021 20:37:13 +0000</pubDate>
        <dc:creator>Jed Brown &lt;jed@jedbrown.org&gt;</dc:creator>
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