Changes in manual.xml

6c5693054f5123506dab0f5da2d352ed973d0e50 - Merge branch 'jczhang/2026-02-05/improve-mpi-gpu-aware' into 'main'

Fri, 13 Feb 2026 21:03:49 +0000

Merge branch 'jczhang/2026-02-05/improve-mpi-gpu-aware' into 'main'Improve MPI GPU-aware configure and checkSee merge request petsc/petsc!9005 List of files: /petsc/config/BuildSystem/docs/manual.xml

a8cf87e0cda1ec657604cb05f9792c58ed32bee1 - Replace mpirun with mpiexec, as only the latter is in the standard

Thu, 12 Feb 2026 23:59:58 +0000

Replace mpirun with mpiexec, as only the latter is in the standard List of files: /petsc/config/BuildSystem/docs/manual.xml

7b5fd022a6ba26727040df7457b27566b4c6742d - Merge branch 'jolivet/housekeeping' into 'main'

Tue, 28 Oct 2025 13:36:29 +0000

Merge branch 'jolivet/housekeeping' into 'main'Minor housekeepingSee merge request petsc/petsc!8811 List of files: /petsc/config/BuildSystem/docs/manual.xml

ab701a13729552d5c5ef588d660fdd88f1a8bdd2 - checkbadSource: check style of config/*

Mon, 27 Oct 2025 09:39:40 +0000

checkbadSource: check style of config/* List of files: /petsc/config/BuildSystem/docs/manual.xml

a207d08edab748df642306d213e6e891ba48ee92 - Merge remote-tracking branch 'origin/release'

Sun, 30 Oct 2022 16:03:25 +0000

Merge remote-tracking branch 'origin/release' List of files: /petsc/config/BuildSystem/docs/manual.xml

ed31fb71c382ced3521e135689f4f4deaeece76b - Merge branch 'jose/codespell-typos' into 'release'

Sun, 30 Oct 2022 16:01:21 +0000

Merge branch 'jose/codespell-typos' into 'release'A few more codespell fixesSee merge request petsc/petsc!5786 List of files: /petsc/config/BuildSystem/docs/manual.xml

d5b43468fb8780a8feea140ccd6fa3e6a50411cc - A few more codespell fixes

Sat, 29 Oct 2022 10:39:42 +0000

A few more codespell fixes List of files: /petsc/config/BuildSystem/docs/manual.xml

13f0797c9ee43dff89f935c50db3cc3a545b941c - Merge branch 'barry/2020-06-21/rm-with-vendor-gnu' into 'master'

Mon, 22 Jun 2020 20:36:25 +0000

Merge branch 'barry/2020-06-21/rm-with-vendor-gnu' into 'master'Remove outdated references to --with-vendor --with-gnuSee merge request petsc/petsc!2895 List of files: /petsc/config/BuildSystem/docs/manual.xml

3703a6a7d9ceda88ee07755360990e1609c9169a - Remove outdated references to --with-vendor --with-gnu

Sun, 21 Jun 2020 13:30:54 +0000

Remove outdated references to --with-vendor --with-gnuCommit-type: documentationTime: .1 hours List of files: /petsc/config/BuildSystem/docs/manual.xml

78945fcaee99765d2411105a1a2e44202294f02a - Merge branch 'master' into knepley/feature-plex-functionals

Fri, 17 Aug 2018 18:38:42 +0000

Merge branch 'master' into knepley/feature-plex-functionals* master: (984 commits) netcdf: set zlib as optional dependency corretly [wrt --enable-netcdf-4] - otherwise netcdf configure errors out fix gcov obj path -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Dev manual: remove duplicate entry Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. ... List of files: /petsc/config/BuildSystem/docs/manual.xml

13a035b13f0d57cc952439d2c8f7ce514226f11a - Merge branch 'master' into knepley/feature-plex-elasticity-test

Mon, 13 Aug 2018 15:19:56 +0000

Merge branch 'master' into knepley/feature-plex-elasticity-test* master: (1553 commits) -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. PetscFileRetrieve(): Suppress output to STDERR when downloading a file. MatMatMult: Fixed unused variable pN. DMDestroy: Guard call to dm->ops->destroy * Similar guards are in place in many other methods (IS,Vec,Mat) and permit the DM to be destroyed even if DMSetType() was never called. ... List of files: /petsc/config/BuildSystem/docs/manual.xml

59e7829ccff665372c1d09026a11beea9cbf8624 - Merge branch 'master' into knepley/feature-plex-parallel-submesh

Tue, 07 Aug 2018 17:51:05 +0000

Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComplex type is missing from fortran initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized. Move access of prefix until it is actually used Remove DMDASplitComm2d(), used in one example that was not tested Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm remove unneeded reassignment of same value Missing CHKERRQ(); Mostly in Tao code Remove clang static analyser warning about passing NULL variable to strncat() missing newline in -ts_monitor_extreme minor fixes for integer counters Configure: Deal with '__func__' in C89 builds with newer Clang and GCC. Jenkinsfile: Increased timeout for tests to 5 minutes. 3.9 changes: further clarify removal of -pc_factor_mat_solver_package Options deprecations: add "PETSc" to inline warning removing unused variable MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods. Add -ts_monitor_extreme Dev manual: add note on deprecating options database keys ...Conflicts: src/dm/impls/plex/examples/tests/ex4.c List of files: /petsc/config/BuildSystem/docs/manual.xml

c989281d0f5d3a508bcd91a661a83c6798634bdd - Merge branch 'master' into knepley/fix-plex-project-tests

Sat, 30 Jun 2018 10:44:33 +0000

Merge branch 'master' into knepley/fix-plex-project-tests* master: (477 commits) Added correct report number for PETSc Developers Guide Update PETSc Developers Guide title and final pages to new ANL style Hash: Quick documentation fix PetscBinaryViewerRead -> PetscViewerBinaryRead cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for DrMemory which may serve as an alternative to valgrind on Windows Finish Gail's copyedits for developers manual. openmpi: fix namespace conflict [with static build on ppc64le] two pages of Gail's edits to developers guide Another chapter of Gail's copyedits for the developers guide Gail's copyedits on two more chapters of the developers guide Fix more %d to %D in GAMG code. Fix code style in GAMG code DMPlexVTK: vertices is int! need to use %d instead of %D TS ex18: update outputs (reported by nightly tests) Use %D in error messages for GAMG hash; fix style issues with GAMG hash config: Update petsc4py git commit Fix bad plain extern declaration. Add Gail's copyedits for the initial portion of the developers guide Add missing common block to subroutine fix mpiuni tests with xl compilers ... List of files: /petsc/config/BuildSystem/docs/manual.xml

2cf2a4037edc21d5c05f749db82f170038eb1275 - Merge branch 'master' into knepley/feature-pc-patch

Mon, 11 Jun 2018 17:40:22 +0000

Merge branch 'master' into knepley/feature-pc-patch* master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ...Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c List of files: /petsc/config/BuildSystem/docs/manual.xml

0f8c605276c8761bb4264c01f9a18322b1c57076 - Merge branch 'knepley/feature-error-logging' of bitbucket.org:petsc/petsc into knepley/feature-error-logging

Thu, 31 May 2018 14:46:11 +0000

Merge branch 'knepley/feature-error-logging' of bitbucket.org:petsc/petsc into knepley/feature-error-logging List of files: /petsc/config/BuildSystem/docs/manual.xml

0f981e3be1d7648c266dda0fc85fa188deb0d61f - Merge branch 'master' into knepley/feature-error-logging

Thu, 31 May 2018 14:26:58 +0000

Merge branch 'master' into knepley/feature-error-logging* master: (324 commits) DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Revert "tgamma: icc on windows requires mathimf.h for tgamma." setup routine no longer calls PetscCalloc5 if the arrays have already been allocated in a previous setup call clarify SNESGetFunction() Move MOAB docs to submansec so as not to clutter DM mansec doc: remove matlab from doc generation dependency - i.e remove 'alldoc3' and use 'html' to generate corresponding '*.m.html' files. Remove matlab pounders related cruft that is not required. Document the matlab code better and include an appropriate message in the help text. Fixed typo. Remove the inclusion of matlab in testing. Finalizing comments and the work for the test problems. Finished the testing and generation of plots. Some simple bug fixes addressed. Set -Wl,-rpath for Mac OS Matlab mkl directory; don't pass -nojvm to matlab since it causes crashes on Barry's machine and is not needed Added list of known problems with the code. Added a comment on ignoring the return from Tao. Finish with initial implementation of matlab interface to test TAO pounders. Working through the matlab interface for pounders testing. Fix typo in manual Reported-by: Jaroslaw Piwonski (CAU) Fixed mkl_sparse_sypr() calls that were using an unsupported value in the matrix descriptor. test harness: simplify code that checks for sequential-only tests Fix the doc for call-backs drdyf drdpf ... List of files: /petsc/config/BuildSystem/docs/manual.xml

46bd19afece120b0c5c8cff8345081a53fac5805 - Merge remote-tracking branch 'origin/balay/fix-confusing-configure-dir-options'

Fri, 20 Apr 2018 19:07:45 +0000

Merge remote-tracking branch 'origin/balay/fix-confusing-configure-dir-options' List of files: /petsc/config/BuildSystem/docs/manual.xml

0aa1f76de5929987880f966cbffd27c853dc8e41 - configure: fix confusing configure dir options

Wed, 18 Apr 2018 19:55:12 +0000

configure: fix confusing configure dir options--with-packages-dir -> --with-packages-download-dir--with-external-packages-dir -> --with-packages-build-dir--package-dirs -> --with-packages-search-path--search-dirs -> --with-executables-search-path List of files: /petsc/config/BuildSystem/docs/manual.xml

e366c154b69cf29c88be23f768f0f07dd2b3250c - Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maint

Wed, 15 Nov 2017 03:23:31 +0000

Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maintObtain changed (v3.5) handling of MatMPIBAIJSetPreallocationCSR to matchdocumentation. List of files: /petsc/config/BuildSystem/docs/manual.xml

3d996552296fa5aff2ef76b1450b6d3231aa62c2 - Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Tue, 19 Jul 2016 17:47:40 +0000

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepointConflicts: src/docs/website/documentation/changes/dev.html src/ksp/ksp/examples/tutorials/ex59.c src/ksp/pc/impls/bddc/bddc.c src/ksp/pc/impls/bddc/bddcfetidp.c src/ksp/pc/impls/bddc/bddcprivate.c src/ksp/pc/impls/bddc/bddcschurs.c src/mat/impls/is/matis.c src/mat/impls/is/matis.h List of files: /petsc/config/BuildSystem/docs/manual.xml