Changes in dataFilesPath.py

71e05e802be962d1c5358cca7999193d1e1e469f - Merge remote-tracking branch 'origin/maint' into master

Wed, 16 Sep 2020 03:18:09 +0000

Merge remote-tracking branch 'origin/maint' into master List of files: /petsc/config/PETSc/options/dataFilesPath.py

62d8a5e14588755fcbcb96b7961822b55e6dd507 - Merge branch 'balay/ci-win01/maint' into 'maint'

Wed, 16 Sep 2020 03:17:47 +0000

Merge branch 'balay/ci-win01/maint' into 'maint'CI: add petsc-win01. Now all windows tests can be run on either petsc-win01 or ps5See merge request petsc/petsc!3171 List of files: /petsc/config/PETSc/options/dataFilesPath.py

4e00a515d73635677e774a7eeacc8dd7a6c9a9f2 - configure: use appropriate path notation for DATAFILESPATH on Windows with MS/Intel compilers

Sun, 13 Sep 2020 16:57:49 +0000

configure: use appropriate path notation for DATAFILESPATH on Windows with MS/Intel compilers List of files: /petsc/config/PETSc/options/dataFilesPath.py

13a035b13f0d57cc952439d2c8f7ce514226f11a - Merge branch 'master' into knepley/feature-plex-elasticity-test

Mon, 13 Aug 2018 15:19:56 +0000

Merge branch 'master' into knepley/feature-plex-elasticity-test* master: (1553 commits) -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. PetscFileRetrieve(): Suppress output to STDERR when downloading a file. MatMatMult: Fixed unused variable pN. DMDestroy: Guard call to dm->ops->destroy * Similar guards are in place in many other methods (IS,Vec,Mat) and permit the DM to be destroyed even if DMSetType() was never called. ... List of files: /petsc/config/PETSc/options/dataFilesPath.py

59e7829ccff665372c1d09026a11beea9cbf8624 - Merge branch 'master' into knepley/feature-plex-parallel-submesh

Tue, 07 Aug 2018 17:51:05 +0000

Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComplex type is missing from fortran initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized. Move access of prefix until it is actually used Remove DMDASplitComm2d(), used in one example that was not tested Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm remove unneeded reassignment of same value Missing CHKERRQ(); Mostly in Tao code Remove clang static analyser warning about passing NULL variable to strncat() missing newline in -ts_monitor_extreme minor fixes for integer counters Configure: Deal with '__func__' in C89 builds with newer Clang and GCC. Jenkinsfile: Increased timeout for tests to 5 minutes. 3.9 changes: further clarify removal of -pc_factor_mat_solver_package Options deprecations: add "PETSc" to inline warning removing unused variable MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods. Add -ts_monitor_extreme Dev manual: add note on deprecating options database keys ...Conflicts: src/dm/impls/plex/examples/tests/ex4.c List of files: /petsc/config/PETSc/options/dataFilesPath.py

2f07c833297f1c1acc6a9f8c100af3fa2b180e36 - Merge branch 'master' into knepley/feature-snes-ex13-spectral

Sat, 14 Apr 2018 13:36:45 +0000

Merge branch 'master' into knepley/feature-snes-ex13-spectral* master: (2350 commits) migrate warning fix from next-tmp Revert "Remove dead code." clarifying comment in the code Remove dead code. Add JuMP citation Copyedits and updates to developers manual Add more protection to intrinsics MPI: protect arguments in MPI macros Add the missing conditionals for 64-bit build Plex+VTK: Fix field type determination Fix bug in name cleanup Bib: Added ref Plex+VTK: Fix field type determination Plex: Updated test output - I am now hating this shit forgot to save file after moving prototypes to petscsys.h update Apple example project settings per Xcode Two functions should actually be public, used, for example from Apple MacOS and iOS programs includes should always be included relative to include directory Apple removed old locations of docsets SNES ex12: Updated test output ...Conflicts: src/snes/examples/tutorials/ex13.c List of files: /petsc/config/PETSc/options/dataFilesPath.py

9044fa666813e72067b2d44bab405329fb3f183c - Merge branch 'master' into knepley/fix-plex-residual-loop

Sat, 14 Apr 2018 11:17:56 +0000

Merge branch 'master' into knepley/fix-plex-residual-loopWarning: This merge includes real changes* master: (188 commits) Add JuMP citation Copyedits and updates to developers manual Add more protection to intrinsics MPI: protect arguments in MPI macros Add the missing conditionals for 64-bit build Plex+VTK: Fix field type determination Fix bug in name cleanup Bib: Added ref Plex+VTK: Fix field type determination Plex: Updated test output - I am now hating this shit forgot to save file after moving prototypes to petscsys.h update Apple example project settings per Xcode Two functions should actually be public, used, for example from Apple MacOS and iOS programs includes should always be included relative to include directory Apple removed old locations of docsets SNES ex12: Updated test output SNES ex62: Set name of solution vector - Update test output revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3 ...Conflicts: src/snes/utils/dmplexsnes.c src/ts/utils/dmplexts.c List of files: /petsc/config/PETSc/options/dataFilesPath.py

e4bc0d72a7a62106b6c16a682dc8072909a4b1f1 - Merge branch 'master' into knepley/feature-pc-patch

Sun, 08 Apr 2018 18:11:26 +0000

Merge branch 'master' into knepley/feature-pc-patch* master: (440 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings fix grep usage on solaris [use egrep] opensolaris: fix errors Update timer reporting and minor reporting fix Remove redundant if statement. Found by @jedbrown Fixed problem with order of developer photos on website. superlu_dist: use correct flag in example [PETSC_HAVE_SUPERLU -> PETSC_HAVE_SUPERLU_DIST] Bib: PERMON ref fix for osx doc: more author fixes doc: more author fixes Italicized "orderings" in MPI process placement discussion. Added Richard to the user manual author list. Added Richard to the list of active developers on the website. add string check for MS-MPI and IMPI timeout errors opensolaris does not have multiple grep utils - but default one does not support -F. So use fgrep instead Standardizing timeout checks Report wall clock time of total tests Use time instead of date %s ...Conflicts: include/petscpc.h src/ksp/ksp/interface/itfunc.c List of files: /petsc/config/PETSc/options/dataFilesPath.py

bccf594b29529893b47f8e18e56a9576025917fe - Merge remote-tracking branch 'origin/jed/futurize-stage-1'

Wed, 04 Apr 2018 20:39:42 +0000

Merge remote-tracking branch 'origin/jed/futurize-stage-1' List of files: /petsc/config/PETSc/options/dataFilesPath.py

5b6bfdb9644f185dbf5e5a09b808ec241507e1e7 - python: futurize stage 1 (modernize python-2 code)

Mon, 02 Apr 2018 20:46:25 +0000

python: futurize stage 1 (modernize python-2 code)This should have no behavioral change. It was generated by running futurize -1 -nw config lib setup.py src systemsfollowed by reverting some "from . import" relative imports (PEP 328without 366) and fixing up RDict.py __contains__ to not cause recursion. List of files: /petsc/config/PETSc/options/dataFilesPath.py

dd169d643cbf4b5f50ca99c97eb8f9235c6ca078 - Merge branch 'master' into stefano_zampini/feature-gmsh-periodic

Wed, 28 Jun 2017 20:13:21 +0000

Merge branch 'master' into stefano_zampini/feature-gmsh-periodic* master: (1016 commits) metis: setself.downloaddirnames for change in 6d90219d8fa4f8b2fd242cc6ff9008358d87c26f fix compile warning: /sandbox/petsc/petsc.clone/src/snes/examples/tests/ex2.c:250:8: warning: ‘pointsAllProcs’ may be used uninitialized in this function [-Wmaybe-uninitialized] ierr = DMInterpolationSetUp(interpolator, dm, pointsAllProcs);CHKERRQ(ierr); migrate 'build requires: !mpiuni' to new format migrate 'build requires: !complex' to new format workarround 'division by zero' compiler warning on windows C:\cygwin64\home\petsc\PETSC~3.CLO\src\ts\examples\TUTORI~1\ex11.c(416): warning #39: division by zero if (uL->h < 0 || uR->h < 0) {for (i=0; i<1+dim; i++) flux[i] = 0./0.; return;} /* SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Reconstructed thickness is negative"); */ dos2unix to prevent warnings on opensolaris "/export/home/petsc/petsc.clone/src/ksp/ksp/examples/tests/ex53.c", line 6: warning: invalid white space character in directive fix output file - corresponding to code changes in efd4aadf157bf1ba2d80c2be092fcf4247860003 disable test on windows update log from opensolaris so that the diff is clean on linux aswell update grep in sync with change in efd4aadf157bf1ba2d80c2be092fcf4247860003 Fixed code that did not correctly set current color for block insertion Update output files that did not get fixed after previous merges Change MPIUni to not immediately abort on operations it cannot perform, instead return error code Add filter for example that can produce 1 different iteration count Example add system calloc, bad formating of %d in print, commented out code Always use (void) for functions that take no arguments, never () always need to caste PetscReal variables to (double) in print statements updates to manual page for clarity update help menu for MatRARt() -- MatRARt_mpiaij_mpiaij is supported now, but not efficient. fix nightlybuild error with c1cbb1def3f8ddca04c3998b9c06618fd1ffef35 on arch-linux-IPL64 src/ksp/pc/examples/tests ex5_1 ...Conflicts: include/petscdm.h src/dm/impls/plex/plexcreate.c src/dm/impls/plex/plexgmsh.c src/dm/impls/plex/plexhdf5.c List of files: /petsc/config/PETSc/options/dataFilesPath.py

f09ee9fb1fd5dfb93fb4f570c7a86535d3671960 - Merge branch 'master' into stefano_zampini/feature-fetidp-ex69

Fri, 12 May 2017 15:57:34 +0000

Merge branch 'master' into stefano_zampini/feature-fetidp-ex69 List of files: /petsc/config/PETSc/options/dataFilesPath.py

a04797880822a4ab2b2131e566b75dfe123750f6 - Merge branch 'master' into knepley/feature-plex-boundary-values

Sun, 07 May 2017 18:04:13 +0000

Merge branch 'master' into knepley/feature-plex-boundary-values* master: (487 commits) Bib: More refs Fixed errors in the manuals and ts_glee source code doc fix bug to enable '-xxx_via [alg]' to showup in '-help' Reported-by: Mark Adams Plex: Remove dead code TS tutorials ex11: remove unused functions TSAdapt: Set TSADAPTNONE as default adapt type DMPlex: missed viewer change in synchronized output Revert "Merge branch 'hzhang/ts-ex9busdmnetwork'" TSAdapt: Update changes/dev.html TSAdapt: Set default type for TSGLEE TS tutorials ex11: make work with complex scalars Bib: Added ref TS ex18: Fix initializer TS ex11: Fix M_PI Plex ex1f90: FUCK FORTRAN f2cblaslapack: remove duplicate xerbla.o and xerbla_array.o from lapack [they are already in blas] TSAdapt: Refactor handling of default adapt type TSAdapt: Update changes/dev.html TSAdapt: Update manual TSAdapt: Refactor interface and implementations ... List of files: /petsc/config/PETSc/options/dataFilesPath.py

9f30e0edd24d317a73a8380012a92bfc9e174697 - Merge branch 'master' of bitbucket.org:petsc/petsc

Fri, 28 Apr 2017 18:15:40 +0000

Merge branch 'master' of bitbucket.org:petsc/petsc List of files: /petsc/config/PETSc/options/dataFilesPath.py

45d775feb828de3580368b3f76a038ad038e7fc9 - Merge remote-tracking branch 'origin/scott/test-harness-altfiles'

Fri, 28 Apr 2017 16:56:48 +0000

Merge remote-tracking branch 'origin/scott/test-harness-altfiles' List of files: /petsc/config/PETSc/options/dataFilesPath.py

c90b701ee8da86c6fb76d5aea9fecd2a44e0e5b8 - Merge branch 'master' into knepley/feature-plex-pragmatic-parallel

Tue, 14 Mar 2017 14:32:52 +0000

Merge branch 'master' into knepley/feature-plex-pragmatic-parallel* master: (1379 commits) Minor fixes for tchem examples due to changes in PETSc infrastructure update webpage about API changes add help menu for MatCreateSubMatricesMPI() rename struct Mat_SubMat -> Mat_SubSppt add a little information to the manual about using tchem rename MatCreateSubMatrixComposite -> MatCreateSubMatrixVirtual; Mat_SubMatrix -> Mat_SubVirtual need to protect the \ passed on the makefile on my Mac Bib: Updated ref update src/mat/examples/tests/output/ex23_#.out rename MatGetSubMat -> MatCreateSubMat Mark MatCreateMPIAIJWithSplitArrays() and MatMPIAIJSetPreallocationCSR() with MAT_NO_OFF_PROC_ENTRIES superlu: libray is installed in PREFIX/lib64 - fix this to use PREFIX/lib backport fixes cc105cc3 2b35c90a - required for 3bf428d - that was backported from master - 80c96bb 'echo -n' fails on opensolaris/osx - so avoid using it. fix diffs in nightlybuilds due to options in ~/.petscrc add Kelley03 to src/docs/tex/petsc.bib build: determine moudles, mpi.h used during buildtime and print in 'info' fix analyzer warnings fix build failure on opensolaris - where -lm from flibs is removed due to -lm in cxxlibs. But then - only flib gets used for some configure tests [blaslapack, parms] config: prefer __restrict over C99 restrict keyword ... List of files: /petsc/config/PETSc/options/dataFilesPath.py

7f3f187161ed5a54f5674c21c3510766dcca9df7 - Merge branch 'scott/test-harness-altfiles' of https://bitbucket.org/petsc/petsc into scott/test-harness-altfiles

Mon, 06 Mar 2017 16:14:20 +0000

Merge branch 'scott/test-harness-altfiles' of https://bitbucket.org/petsc/petsc into scott/test-harness-altfilesGrabbing Jed's changes. List of files: /petsc/config/PETSc/options/dataFilesPath.py

09cf0baaec22229531ee39fd86803026691a8d6a - gtest: move DATAFILESPATH requirement to run-time, report all SKIP reasons

Fri, 03 Mar 2017 21:15:13 +0000

gtest: move DATAFILESPATH requirement to run-time, report all SKIP reasonsGather all SKIP reasons instead of just reporting the first reason.When the only requirement is DATAFILESPATH, evaluate it at run-time.Use the value in configure first, but still recognize the environmentvariable.Helped-by: Scott Kruger List of files: /petsc/config/PETSc/options/dataFilesPath.py

b358f029db329549adf8bf8ef7866dd88d9a5d1a - Merge branch 'master' into knepley/fix-plex-examples-cleanup

Tue, 17 Jan 2017 00:55:06 +0000

Merge branch 'master' into knepley/fix-plex-examples-cleanup* master: (156 commits) Doc: Added headers for documentation sections Bib: Small corrections doc: update example makefiles with deleted sourcefile info doc: fix manual build errors doc: fix SOURCEH for some fortran includes that got moved doc: fix broken manualpages - bug introduced by 1b266c9 MatMissingDiagonal() is actually not a collective operation PetscFECreateDefault(): allow 0th order quadrature fix gmakegentest.py to ignore *.xx files that are not source code but are in the files increase table input size to (A->cmap->n + a->B->cmap->N) for MatTransposeMatMultSymbolic_MPIAIJ_MPIAIJ() gtest: add TEST and RM clean output for Satish gtest: set PATH for windows DLL tests, and enable -Dpetsc_EXPORTS only during (dll) build - and not for examples gtest: use target-specific var to deduplicate FC rules for modules gtest: for 'allgtest' and 'allgtest-tap' - use V=0 instead of 'grep -v CC' etc.. gtest: quiet absoft compiler commands [so they can be filtered]. remove incorrect requires from more test files, remove output from -fp_trap example in test because it cannot be machine independent gtest: windows fixes. add filter to remove filename from compiler stdout. And fix filters to use petscdiff Removed generated requires in the wrong place from test examples. Fix test output for additional information printed about computed eigenvalues gtest: fix ex5f.F to use 'format' so that the output from ifort matches the one from gfortran ... List of files: /petsc/config/PETSc/options/dataFilesPath.py

aa086d3080246eba5d79f3912b31ad5c9d4e0624 - Merge branch 'scott/testharness-update1'

Fri, 13 Jan 2017 21:38:52 +0000

Merge branch 'scott/testharness-update1' List of files: /petsc/config/PETSc/options/dataFilesPath.py