Changes in petsc.py

a207d08edab748df642306d213e6e891ba48ee92 - Merge remote-tracking branch 'origin/release'

Sun, 30 Oct 2022 16:03:25 +0000

Merge remote-tracking branch 'origin/release' List of files: /petsc/config/PETSc/petsc.py

ed31fb71c382ced3521e135689f4f4deaeece76b - Merge branch 'jose/codespell-typos' into 'release'

Sun, 30 Oct 2022 16:01:21 +0000

Merge branch 'jose/codespell-typos' into 'release'A few more codespell fixesSee merge request petsc/petsc!5786 List of files: /petsc/config/PETSc/petsc.py

d5b43468fb8780a8feea140ccd6fa3e6a50411cc - A few more codespell fixes

Sat, 29 Oct 2022 10:39:42 +0000

A few more codespell fixes List of files: /petsc/config/PETSc/petsc.py

7d7a130581f92c95b58cbc3d316a029a651d388e - Merge branch 'balay/disable-python2' into 'main'

Mon, 18 Apr 2022 23:55:52 +0000

Merge branch 'balay/disable-python2' into 'main'Balay/disable python2See merge request petsc/petsc!5131 List of files: /petsc/config/PETSc/petsc.py

df3bd252dbc574245cbbb4edf6b407438c525c05 - disable python2 support - now python3.4+ is required

Fri, 15 Apr 2022 18:30:13 +0000

disable python2 support - now python3.4+ is required- update CI tests to use python3- continue to use python2 on MacOS CI [due to python3 issues on 10.15.7] List of files: /petsc/config/PETSc/petsc.py

f882803cc229b3a4b5704278364815583f823089 - Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'

Sat, 26 Mar 2022 01:48:19 +0000

Merge branch 'jacobf/2022-02-23/variadic-chkerr' into 'main'Variadic CHKERRQ()See merge request petsc/petsc!4889 List of files: /petsc/config/PETSc/petsc.py

9566063d113dddea24716c546802770db7481bc0 - The great renaming:

Fri, 25 Mar 2022 01:50:18 +0000

The great renaming:- CHKERRQ() -> PetscCall()- CHKERRV() -> PetscCallVoid()- CHKERRMPI() -> PetscCallMPI()- CHKERRABORT() -> PetscCallAbort()- CHKERRCONTINUE() -> PetscCallContinue()- CHKERRXX() -> PetscCallThrow()- CHKERRCXX() -> PetscCallCXX()- CHKERRCUDA() -> PetscCallCUDA()- CHKERRCUBLAS() -> PetscCallCUBLAS()- CHKERRCUSPARSE() -> PetscCallCUSPARSE()- CHKERRCUSOLVER() -> PetscCallCUSOLVER()- CHKERRCUFFT() -> PetscCallCUFFT()- CHKERRCURAND() -> PetscCallCURAND()- CHKERRHIP() -> PetscCallHIP()- CHKERRHIPBLAS() -> PetscCallHIPBLAS()- CHKERRHIPSOLVER() -> PetscCallHIPSOLVER()- CHKERRQ_CEED() -> PetscCallCEED()- CHKERR_FORTRAN_VOID_FUNCTION() -> PetscCallFortranVoidFunction()- CHKERRMKL() -> PetscCallMKL()- CHKERRMMG() -> PetscCallMMG()- CHKERRMMG_NONSTANDARD() -> PetscCallMMG_NONSTANDARD()- CHKERRCGNS() -> PetscCallCGNS()- CHKERRPTSCOTCH() -> PetscCallPTSCOTCH()- CHKERRSTR() -> PetscCallSTR()- CHKERRTC() -> PetscCallTC() List of files: /petsc/config/PETSc/petsc.py

83c10b7ed13e5cf0bac5061cf1169b930c013b5f - Merged petsc/petsc into master

Tue, 04 Dec 2018 05:09:32 +0000

Merged petsc/petsc into master List of files: /petsc/config/PETSc/petsc.py

a5a49157e8f0cda1ee246d4b38ccd40aa8bd8906 - Merge branch 'master' into jpusztay/feature-swarm-symplectic-example

Thu, 25 Oct 2018 15:44:39 +0000

Merge branch 'master' into jpusztay/feature-swarm-symplectic-example List of files: /petsc/config/PETSc/petsc.py

e901d7f783378c340f80a71ad0d479b16cb27ec8 - Merge branch 'master' into jpustay/feature-swarm-example

Thu, 25 Oct 2018 15:37:37 +0000

Merge branch 'master' into jpustay/feature-swarm-example List of files: /petsc/config/PETSc/petsc.py

baeaa64efad046693dfe8565b2a340832b8902ce - Merged petsc/petsc into master

Thu, 25 Oct 2018 15:34:14 +0000

Merged petsc/petsc into master List of files: /petsc/config/PETSc/petsc.py

df90af5656ec20a6e3cb673af4e9b5c5d856317c - Merge branch 'master' into arcowie-rem/feature-error-logging

Wed, 24 Oct 2018 18:29:36 +0000

Merge branch 'master' into arcowie-rem/feature-error-logging* master: (393 commits) Bib: Update reference Mat: Doc fix Bib: Updated ref PetscDS: Doc fixes PC+LU: Do not try to refactor an already factored matrix Mat: Small fix for checking and docs Mat: Added MatSetFactorType() - Needed it when making a shell matrix look factored PetscDS: Added PetscDSUpdateBoundary() - Lets the user change the boundary condition single precision produces different convergence history p4est: has a dependency on zlib - so handle it correctly Add -mat_mffd_complex to use the Lyness complex number trick to compute J_u * v instead of differencing. Replace VecWAXPY by VecAXPY if needed Revert "Replace VecWAXPY by VecAXPY if needed" Replace VecWAXPY by VecAXPY if needed MatHermitianTransposeGetMat and MatCreateVecs ex19: Updated test filter to avoid false positives. DM: Improved Global-To-Natural docs Suggested-by: Josh L Do not build shared openblas when doing static build Upgrade OpenBLAS to 0.3.3 test: add alt output file for changes in OSX-10.14 and Xcode-10.0 [perhaps related to ML] ...Conflicts: src/vec/is/utils/vsectionis.c List of files: /petsc/config/PETSc/petsc.py

27821aea53b95b424fe865570a4f61259f97b2ea - Merge branch 'jed/python3-futurize' [PR #1122]

Mon, 22 Oct 2018 15:49:06 +0000

Merge branch 'jed/python3-futurize' [PR #1122]Merge announces support for Python 3.4+ in changes/dev.html.* jed/python3-futurize: (44 commits) gmakegentest: avoid prefix matching in regex dm tests ex23.c: fix test args: -one -two -three gmakegentest: more fixes gmakegentest: fix processing of arguments containing number followed by "-" gmakegentest: always loop over nsize; Python-3 fixes python3: add in a python-3.4 test python: fix build on osx/opensolaris - where 'RANLIB=ranlib -c' i.e with a space.. python3: fix --download-ptscotch error configure: glob() gets executed early - whereas we need to get file list later [after 'make all' or equivalent] so revert back to using shell to get file-list python3: map() requires a list modifier for this usage. python: replace ModuleNotFoundError a python3.6+ feature with ImportError config: call setup to ensure that debugLevel is set nightlies: switch linux-pkg-dbg-ftn-interfaces to python3 config: enable Python-3 config: urllib/urlparse updates for Python-3 compatibility config fblaslapack: use isIBM instead of manual test python: replace commands with subprocess Fix LOCDIR paths generateetags.py: switch from commands to subprocess; unicode fix python: don't import commands when it isn't used ... List of files: /petsc/config/PETSc/petsc.py

c6ef1b5b14a17789016826373eae9ee70a0166af - config: use open() instead of file() to open files

Thu, 13 Sep 2018 03:58:44 +0000

config: use open() instead of file() to open filesThis is the recommended usage and file is not defined in Python-3. List of files: /petsc/config/PETSc/petsc.py

7cfe7613c2baca7522211c5e68ba6f3fc00c9fcf - config: remove "import user"; deprecated in Python 2.6 and removed in 3

Thu, 13 Sep 2018 03:52:42 +0000

config: remove "import user"; deprecated in Python 2.6 and removed in 3I can't imagine why anyone would want this unpredictable behavior in aconfiguration system in the first place. List of files: /petsc/config/PETSc/petsc.py

78945fcaee99765d2411105a1a2e44202294f02a - Merge branch 'master' into knepley/feature-plex-functionals

Fri, 17 Aug 2018 18:38:42 +0000

Merge branch 'master' into knepley/feature-plex-functionals* master: (984 commits) netcdf: set zlib as optional dependency corretly [wrt --enable-netcdf-4] - otherwise netcdf configure errors out fix gcov obj path -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Dev manual: remove duplicate entry Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. ... List of files: /petsc/config/PETSc/petsc.py

13a035b13f0d57cc952439d2c8f7ce514226f11a - Merge branch 'master' into knepley/feature-plex-elasticity-test

Mon, 13 Aug 2018 15:19:56 +0000

Merge branch 'master' into knepley/feature-plex-elasticity-test* master: (1553 commits) -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. PetscFileRetrieve(): Suppress output to STDERR when downloading a file. MatMatMult: Fixed unused variable pN. DMDestroy: Guard call to dm->ops->destroy * Similar guards are in place in many other methods (IS,Vec,Mat) and permit the DM to be destroyed even if DMSetType() was never called. ... List of files: /petsc/config/PETSc/petsc.py

59e7829ccff665372c1d09026a11beea9cbf8624 - Merge branch 'master' into knepley/feature-plex-parallel-submesh

Tue, 07 Aug 2018 17:51:05 +0000

Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComplex type is missing from fortran initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized. Move access of prefix until it is actually used Remove DMDASplitComm2d(), used in one example that was not tested Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm remove unneeded reassignment of same value Missing CHKERRQ(); Mostly in Tao code Remove clang static analyser warning about passing NULL variable to strncat() missing newline in -ts_monitor_extreme minor fixes for integer counters Configure: Deal with '__func__' in C89 builds with newer Clang and GCC. Jenkinsfile: Increased timeout for tests to 5 minutes. 3.9 changes: further clarify removal of -pc_factor_mat_solver_package Options deprecations: add "PETSc" to inline warning removing unused variable MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods. Add -ts_monitor_extreme Dev manual: add note on deprecating options database keys ...Conflicts: src/dm/impls/plex/examples/tests/ex4.c List of files: /petsc/config/PETSc/petsc.py

c989281d0f5d3a508bcd91a661a83c6798634bdd - Merge branch 'master' into knepley/fix-plex-project-tests

Sat, 30 Jun 2018 10:44:33 +0000

Merge branch 'master' into knepley/fix-plex-project-tests* master: (477 commits) Added correct report number for PETSc Developers Guide Update PETSc Developers Guide title and final pages to new ANL style Hash: Quick documentation fix PetscBinaryViewerRead -> PetscViewerBinaryRead cast in GAMG_HASH so that it works for PetscInt32 near PETSC_INT_MAX without overflow to negative numbers Add link for DrMemory which may serve as an alternative to valgrind on Windows Finish Gail's copyedits for developers manual. openmpi: fix namespace conflict [with static build on ppc64le] two pages of Gail's edits to developers guide Another chapter of Gail's copyedits for the developers guide Gail's copyedits on two more chapters of the developers guide Fix more %d to %D in GAMG code. Fix code style in GAMG code DMPlexVTK: vertices is int! need to use %d instead of %D TS ex18: update outputs (reported by nightly tests) Use %D in error messages for GAMG hash; fix style issues with GAMG hash config: Update petsc4py git commit Fix bad plain extern declaration. Add Gail's copyedits for the initial portion of the developers guide Add missing common block to subroutine fix mpiuni tests with xl compilers ... List of files: /petsc/config/PETSc/petsc.py

2cf2a4037edc21d5c05f749db82f170038eb1275 - Merge branch 'master' into knepley/feature-pc-patch

Mon, 11 Jun 2018 17:40:22 +0000

Merge branch 'master' into knepley/feature-pc-patch* master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ...Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c List of files: /petsc/config/PETSc/petsc.py