Changes in annulus-20.exo

e366c154b69cf29c88be23f768f0f07dd2b3250c - Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maint

Wed, 15 Nov 2017 03:23:31 +0000

Merge commit 'd47bf9aaf1e5266cc3f0ff499f934c85788965a9' into jed/fix-matcreatempibaij/maintObtain changed (v3.5) handling of MatMPIBAIJSetPreallocationCSR to matchdocumentation. List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

e1b06f76ad35ce2a89fc667d1feb3b2de35f6e0a - Merge branch 'master' into knepley/solkx

Wed, 20 May 2015 13:47:27 +0000

Merge branch 'master' into knepley/solkx* master: (6933 commits) Bib: Added reference Includegraph: Updated for compatibility with new folder layout. Add SNESLineSearchReason to fortran includes Also truncate names to fit 32 char fortran limit fix compile warnings /usr/home/balay/petsc.clone-2/src/vec/vec/interface/vector.c:1944: warning: division by zero in '1.0e+0 / 0.' /usr/home/balay/petsc.clone-2/src/ksp/ksp/interface/itfunc.c:508: warning: 'vec_rhs' may be used uninitialized in this function updated output for new trust region initial size initial size of the trust region is set as a percent of the norm of the initial guess, it should not be related to the initial norm of the function (which is kind of nuts). The default bounds for SNESVISetVariableBounds() in the manual page were reversed from correct values Bib: Added refs Bib: Update MPICH webpage Plex: Forgot to close file removed nonexistent ex46f from makefile test rule Revert "fixed bad merge into master" fixed bad merge into master fix memory leak in mkl_pardiso fix some formatting in mkl_pardiso code mv runex111 from TESTEXAMPLES_C to TESTEXAMPLES_DATAFILESPATH Mat+Doc: More Fortran docs Plex ex3: Run tests with the correct number of field components Bib: Added TetGen cite parmetis: make sure 'ldd libparmetis.so' points to the correct libmetis.so that its linked with. small fix as reported by the nightly test ...Conflicts: config/builder.py List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

898446f941de989eb59a155860a54be7cc14d054 - Merge branch 'master' into shri/ts-is-for-differential-variables

Wed, 11 Mar 2015 04:17:30 +0000

Merge branch 'master' into shri/ts-is-for-differential-variablesConflicts: include/petsc-private/tsimpl.h src/ts/impls/eimex/eimex.c src/ts/interface/ts.c List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

9c925a2c1965a879ab6e2178d4282b2f82226662 - Merge branch 'master' into shri/ts-events

Tue, 18 Mar 2014 19:03:28 +0000

Merge branch 'master' into shri/ts-eventsConflicts: src/ts/interface/ts.c List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

edbbd4802399b0b40064ca2493a7d20539e12286 - Merge branch 'master' into barry/xcode

Tue, 10 Dec 2013 03:41:20 +0000

Merge branch 'master' into barry/xcode List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

256ff83fb3d340e77bd23e9ac28a05b695be64ec - Merge branch 'master' into barry/wirth-fusion-materials

Wed, 11 Sep 2013 20:15:23 +0000

Merge branch 'master' into barry/wirth-fusion-materialsConflicts: src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

cc85fe4ded5189db5e5e073ce90ef04de0003fdb - Merge branch 'barry/dmvecmattypes' into barry/saws

Wed, 04 Sep 2013 02:35:32 +0000

Merge branch 'barry/dmvecmattypes' into barry/sawsNeeded to work with version of PETSc that did not have constant calls to VecSetFromOptions() etcConflicts: src/ksp/ksp/interface/ams/kspams.c src/snes/impls/composite/snescomposite.c src/snes/impls/gs/snesgs.c src/snes/impls/nasm/nasm.c src/snes/impls/ngmres/snesngmres.c List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

8117f98bdb9203d359c47c31e74f4d815edd4bf0 - Merge branch 'master' into knepley/feature-dt-fem

Wed, 28 Aug 2013 04:53:59 +0000

Merge branch 'master' into knepley/feature-dt-fem* master: (211 commits) Mat ex170: Comments VTK: Small fix to error message (.vts to .vtu) VTK: Small fix to error message Fixed bib entries Bib: Updates AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions doc: fix named argument in {Vec,Mat,DM}ViewFromOptions Sys: add PetscDataTypeFromString() and test code Mat: Should say that it has a nullspace in MatView() parms: update tarball with fix for namespace conflict with metis fix citation 'Golub_Varga_1961' parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin Sys Logging: revert parent traversal fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly DMDA: fix bad cast of DM_DA to PetscObject MatClique: follow DistMultiVec API changes MatClique: remove unused variables config cmakeboot: add C++ flags any time compiler is available config OpenMP: check for C++ flag any time the compiler is available replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed ...Conflicts: config/builder.py src/dm/impls/plex/plexgeometry.c List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

459e96c185537d65ab1300cd521b4fd92997bc22 - Merge branch 'master' into knepley/feature-plex-refine-3d

Wed, 28 Aug 2013 04:49:16 +0000

Merge branch 'master' into knepley/feature-plex-refine-3d* master: (273 commits) Mat ex170: Comments VTK: Small fix to error message (.vts to .vtu) VTK: Small fix to error message Fixed bib entries Bib: Updates AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions doc: fix named argument in {Vec,Mat,DM}ViewFromOptions Sys: add PetscDataTypeFromString() and test code Mat: Should say that it has a nullspace in MatView() parms: update tarball with fix for namespace conflict with metis fix citation 'Golub_Varga_1961' parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin Sys Logging: revert parent traversal fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly DMDA: fix bad cast of DM_DA to PetscObject MatClique: follow DistMultiVec API changes MatClique: remove unused variables config cmakeboot: add C++ flags any time compiler is available config OpenMP: check for C++ flag any time the compiler is available replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed ...Conflicts: include/petscdmplex.h List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

c0c93d0e5020f50d5c4598bebc92a4b4094db7c4 - Merge branch 'master' into knepley/feature-dmda-section

Wed, 28 Aug 2013 04:46:24 +0000

Merge branch 'master' into knepley/feature-dmda-section* master: (287 commits) Mat ex170: Comments VTK: Small fix to error message (.vts to .vtu) VTK: Small fix to error message Fixed bib entries Bib: Updates AO: fix erroneous processing of -ao_view and factor into AOViewFromOptions doc: fix named argument in {Vec,Mat,DM}ViewFromOptions Sys: add PetscDataTypeFromString() and test code Mat: Should say that it has a nullspace in MatView() parms: update tarball with fix for namespace conflict with metis fix citation 'Golub_Varga_1961' parmetis: update tarball to parmetis-4.0.2-p5 which fixes an install issue with cygwin Sys Logging: revert parent traversal fixed hdf5.py so that if self.libraries.compression is None the code still runs correctly DMDA: fix bad cast of DM_DA to PetscObject MatClique: follow DistMultiVec API changes MatClique: remove unused variables config cmakeboot: add C++ flags any time compiler is available config OpenMP: check for C++ flag any time the compiler is available replaced all left-over uses of a single PetscMalloc() to allocated multiple arrays: replaced with PetscMallocN() The only ones left are when the second array is set into the first array and one ugly usage in the MUMPS interface that cannot be easily fixed ... List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

609189e81d5fde85d13bac703a85ce166f4c499b - Merge branch 'master' of bitbucket.org:petsc/petsc

Wed, 21 Aug 2013 19:15:11 +0000

Merge branch 'master' of bitbucket.org:petsc/petsc List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo

6812b0bb415d3dcc65619a74dc2600ce743c15a0 - Merge branch 'maint'

Tue, 20 Aug 2013 15:25:58 +0000

Merge branch 'maint'Documentation and examples from ATPESC 2013 tutorial* maint: KSPSetDM docs: fix KSPSetDMActive args, add cross-references Added shallow water equation mesh (annulus-20.exo) cleanup some docs error out if KSPSetDM() is used but not made inactive or DMKSPSetComputeOperators() is not called docs on KSPSetNullSpace() that KSP auto uses any previously added to the Mat shallow water examples for tutorial (mesh file annulus-20.exo not included) tutorials/HandsOnExercise: run jobs with ./ex19; MPICH does not add '.' to path TS ex11: I believe the default physics is simple advection. I asked Jed to put in shallow water on the annulus. He might be able to do it from Beijing airport. third case of example 3 had wrong options handson: update instructions [for ex42] added

 to output files, added text to HandsOnTutorial.html added ex42 example run commands  HandsOn: rename all output files to .html - [to avoid popup on safari]  HandsOn: fix line numbers in URLs to ex*.c.html  added explanation of runs for HandsOnExercises  HandsOn: fix missing html format [from copy/paste]  HandsOn: update some runs  HandsOn: update the run commands  HandsOn: Force Jed to come up with more exciting examples than these  TS ex11: Added shallow water equations  TS ex11: Fixed docs  TS ex11: Added some explanatory text. Need more.  Makefile: Added TS ex11 to EXAMPLESC  Main page: Changed links to petsc-dev website  vis  selected 4 tutorial examples began to cleanup tutorial page introduction on them  added start of Hands on tutorial that works through a few examples bug fix for valgrind broadcasting uninitialized values

            List of files:
            /petsc/share/petsc/datafiles/meshes/annulus-20.exo

c1f45a8104f2c285850873316436d23d498dbb6f - Merge branch 'karlrupp/august-tutorial-cherry-picked' into maint

Mon, 19 Aug 2013 15:17:13 +0000

Merge branch 'karlrupp/august-tutorial-cherry-picked' into maintTutorial for ATPESC (http://extremecomputingtraining.anl.gov/)* karlrupp/august-tutorial-cherry-picked: Added shallow water equation mesh (annulus-20.exo) cleanup some docs error out if KSPSetDM() is used but not made inactive or DMKSPSetComputeOperators() is not called docs on KSPSetNullSpace() that KSP auto uses any previously added to the Mat shallow water examples for tutorial (mesh file annulus-20.exo not included) tutorials/HandsOnExercise: run jobs with ./ex19; MPICH does not add '.' to path TS ex11: I believe the default physics is simple advection. I asked Jed to put in shallow water on the annulus. He might be able to do it from Beijing airport. third case of example 3 had wrong options handson: update instructions [for ex42] added

 to output files, added text to HandsOnTutorial.html added ex42 example run commands  HandsOn: rename all output files to .html - [to avoid popup on safari]  HandsOn: fix line numbers in URLs to ex*.c.html  added explanation of runs for HandsOnExercises  HandsOn: fix missing html format [from copy/paste]  HandsOn: update some runs  HandsOn: update the run commands  HandsOn: Force Jed to come up with more exciting examples than these  TS ex11: Added shallow water equations  TS ex11: Fixed docs  TS ex11: Added some explanatory text. Need more.  Makefile: Added TS ex11 to EXAMPLESC  Main page: Changed links to petsc-dev website  vis  selected 4 tutorial examples began to cleanup tutorial page introduction on them  added start of Hands on tutorial that works through a few examples bug fix for valgrind broadcasting uninitialized values

            List of files:
            /petsc/share/petsc/datafiles/meshes/annulus-20.exo

609a26a5f12b4436f00b30235caa08d40fed7383 - Added shallow water equation mesh (annulus-20.exo)

Mon, 19 Aug 2013 14:27:48 +0000

Added shallow water equation mesh (annulus-20.exo) List of files: /petsc/share/petsc/datafiles/meshes/annulus-20.exo