Changes in makedocs

e1b06f76ad35ce2a89fc667d1feb3b2de35f6e0a - Merge branch 'master' into knepley/solkx

Wed, 20 May 2015 13:47:27 +0000

Merge branch 'master' into knepley/solkx* master: (6933 commits) Bib: Added reference Includegraph: Updated for compatibility with new folder layout. Add SNESLineSearchReason to fortran includes Also truncate names to fit 32 char fortran limit fix compile warnings /usr/home/balay/petsc.clone-2/src/vec/vec/interface/vector.c:1944: warning: division by zero in '1.0e+0 / 0.' /usr/home/balay/petsc.clone-2/src/ksp/ksp/interface/itfunc.c:508: warning: 'vec_rhs' may be used uninitialized in this function updated output for new trust region initial size initial size of the trust region is set as a percent of the norm of the initial guess, it should not be related to the initial norm of the function (which is kind of nuts). The default bounds for SNESVISetVariableBounds() in the manual page were reversed from correct values Bib: Added refs Bib: Update MPICH webpage Plex: Forgot to close file removed nonexistent ex46f from makefile test rule Revert "fixed bad merge into master" fixed bad merge into master fix memory leak in mkl_pardiso fix some formatting in mkl_pardiso code mv runex111 from TESTEXAMPLES_C to TESTEXAMPLES_DATAFILESPATH Mat+Doc: More Fortran docs Plex ex3: Run tests with the correct number of field components Bib: Added TetGen cite parmetis: make sure 'ldd libparmetis.so' points to the correct libmetis.so that its linked with. small fix as reported by the nightly test ...Conflicts: config/builder.py List of files: /petsc/systems/Apple/OSX/bin/makedocs

898446f941de989eb59a155860a54be7cc14d054 - Merge branch 'master' into shri/ts-is-for-differential-variables

Wed, 11 Mar 2015 04:17:30 +0000

Merge branch 'master' into shri/ts-is-for-differential-variablesConflicts: include/petsc-private/tsimpl.h src/ts/impls/eimex/eimex.c src/ts/interface/ts.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

f2dee214e9786e57c32a0a7e0b16d5e8ff4abb42 - Merge branch 'master' into jed/chem

Fri, 06 Mar 2015 00:10:44 +0000

Merge branch 'master' into jed/chemNote merging a branch with good stuff in it for a year and a half is insane!Conflicts: src/ts/examples/tutorials/makefile src/ts/interface/ts.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

a197972ac2354be954b7aae623d40f6de50a3e72 - Merge branch 'master' into barry/saws-options-merge-master

Wed, 11 Feb 2015 21:58:15 +0000

Merge branch 'master' into barry/saws-options-merge-masterTotally confusing manual merge, could be wrongConflicts: include/petscoptions.h src/dm/impls/da/dacreate.c src/sys/objects/aoptions.c src/sys/threadcomm/interface/threadcomm.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

609885f52624dc498c55aeb0f5f78335ffdea32c - Merge branch 'stefano_zampini/pcbddc-primalfixes' into stefano_zampini/pcbddc_deluxe

Sun, 13 Jul 2014 11:29:36 +0000

Merge branch 'stefano_zampini/pcbddc-primalfixes' into stefano_zampini/pcbddc_deluxe List of files: /petsc/systems/Apple/OSX/bin/makedocs

f446f392102c0f27660ee53eeef34b565ec92c19 - Merge branch 'maint'

Wed, 02 Jul 2014 02:29:27 +0000

Merge branch 'maint' List of files: /petsc/systems/Apple/OSX/bin/makedocs

0568d0aaac5e647431f3eb4138c458c9ba56f430 - Merge branch 'barry/fix-ios' into maint

Wed, 02 Jul 2014 02:22:33 +0000

Merge branch 'barry/fix-ios' into maint List of files: /petsc/systems/Apple/OSX/bin/makedocs

d9dc08c3c4ad86f608e3e00539e955e6b7ec9a29 - completed tools for generating OSX and iOS installers

Wed, 02 Jul 2014 02:06:11 +0000

completed tools for generating OSX and iOS installersNote iOS framework not tested on iOS device List of files: /petsc/systems/Apple/OSX/bin/makedocs

92c494f3baedf6ba94789fd3d2b592fa0e78e4a2 - Merge branch 'master' into barry/saws-options

Fri, 23 May 2014 03:28:41 +0000

Merge branch 'master' into barry/saws-options List of files: /petsc/systems/Apple/OSX/bin/makedocs

95ecbf38f54bf907855fa510dba2b327f79c8484 - Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvement

Sun, 18 May 2014 11:58:15 +0000

Merge branch 'master' into stefano_zampini/pcbddc-multilevel-improvementConflicts: src/docs/website/documentation/changes/dev.html src/ksp/ksp/examples/tutorials/ex59.c src/ksp/pc/impls/bddc/bddcprivate.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

9c925a2c1965a879ab6e2178d4282b2f82226662 - Merge branch 'master' into shri/ts-events

Tue, 18 Mar 2014 19:03:28 +0000

Merge branch 'master' into shri/ts-eventsConflicts: src/ts/interface/ts.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

5f6acfafb0887e994aa13957be265ee6c56f0673 - Merge branch 'master' into shri/feature-dm-circuit

Tue, 18 Mar 2014 17:32:38 +0000

Merge branch 'master' into shri/feature-dm-circuitConflicts: src/dm/impls/makefile List of files: /petsc/systems/Apple/OSX/bin/makedocs

020631bc6187ccd36e642677d956bf99b1204412 - Merge branch 'master' into prbrune/snes-fascontinuation

Wed, 19 Feb 2014 21:56:56 +0000

Merge branch 'master' into prbrune/snes-fascontinuationConflicts: include/petscsnesfas.h List of files: /petsc/systems/Apple/OSX/bin/makedocs

c7ff62de565b7a47aed9937d7304d01fbead9a78 - Merge branch 'master' into barry/wirth-fusion-materials

Mon, 13 Jan 2014 04:35:32 +0000

Merge branch 'master' into barry/wirth-fusion-materialsbad manual merge needs to be fixedthis is what happens when branches hang around too longConflicts: src/ts/examples/tutorials/advection-diffusion-reaction/ex10.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

ed91c37e759c22f27466ebab4e4819970f7fc0f7 - Merge branch 'master' into knepley/feature-dmda-section

Thu, 19 Dec 2013 22:10:25 +0000

Merge branch 'master' into knepley/feature-dmda-section* master: (319 commits) SNESGS: Fix for uninitialized variable warning in gssecant.c DMPlex: Fix for orientation in Gmsh files - Fixed test output do not use C99 struct initialization code in PETSc Nightly Summary: Added time taken to each of the tests in the dashboard. ASCII printing of floating point numbers must cast to (double) to support quad precision configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0] don't use non-portable and also dependent on floating point precision system level math constants picky compilers fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection() DM: Added DMGet/SetCoordinateSection() Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems DMDA: Missing header - Damn rebase DMPlex ex3: Added 2D Q_1 and 3D P_2 tests DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff() DMDA: Fixed 2D geometry - Should reuse DMPlex routines DMDA: Fix bug in 2D closure operation for cells DMDA: Make closure operations also return the size DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection() ...Conflicts: config/builder.py include/petscdmda.h src/dm/dt/interface/dtfe.c src/dm/impls/da/dageometry.c src/dm/impls/da/dalocal.c src/dm/impls/plex/plexgeometry.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

0d414b50c9586031d50b806f9433f326cd5985a4 - Merged petsc/petsc into master

Tue, 17 Dec 2013 21:58:14 +0000

Merged petsc/petsc into master List of files: /petsc/systems/Apple/OSX/bin/makedocs

9c5a1e1b5b42cd8468630213c5dd53ed948c57d4 - Merge branch 'master' into knepley/feature-plex-gmsh

Tue, 17 Dec 2013 20:10:24 +0000

Merge branch 'master' into knepley/feature-plex-gmsh* master: (163 commits) do not use C99 struct initialization code in PETSc Nightly Summary: Added time taken to each of the tests in the dashboard. ASCII printing of floating point numbers must cast to (double) to support quad precision configure: check fortranDatatypes only when fortran is enabled [this fixes configure crash with --with-fc=0] don't use non-portable and also dependent on floating point precision system level math constants picky compilers fix a couple compiler warnings/errors (depending on compiler) for Matlab engine code DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection() DM: Added DMGet/SetCoordinateSection() Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs replace all echo in test/tutorial makefiles with printf since echo behaves differently on different systems DMDA: Missing header - Damn rebase DMPlex ex3: Added 2D Q_1 and 3D P_2 tests DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff() DMDA: Fixed 2D geometry - Should reuse DMPlex routines DMDA: Fix bug in 2D closure operation for cells DMDA: Make closure operations also return the size DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection() DMDA: Added functions which emulate DMPlex functionality DMDA: Now DMDAGetNumCells() returns the cells in each direction as well ...Conflicts: config/builder.py List of files: /petsc/systems/Apple/OSX/bin/makedocs

324c91e4fa7d8ecc24fab7fd6c3cd09843910874 - Merge branch 'madams/gamg-destroy' into prbrune/pcgamg-classicalinterpolationstrategies

Tue, 17 Dec 2013 18:17:27 +0000

Merge branch 'madams/gamg-destroy' into prbrune/pcgamg-classicalinterpolationstrategies List of files: /petsc/systems/Apple/OSX/bin/makedocs

578f55a3050d705cf3d4ac6376d405f85058a1b8 - Merge branch 'master' into madams/gamg-destroy

Tue, 17 Dec 2013 14:59:20 +0000

Merge branch 'master' into madams/gamg-destroyConflicts: src/ksp/pc/impls/gamg/gamg.c List of files: /petsc/systems/Apple/OSX/bin/makedocs

3d7bc6b7a87c059a83d72c78b4ed3ed5d1f5496e - Merge branch 'master' into knepley/feature-plex-refine-hex

Sun, 15 Dec 2013 01:28:34 +0000

Merge branch 'master' into knepley/feature-plex-refine-hex* master: (68 commits) DMPlex: More fixup from bad rebase, moved to DMGet/SetCoordinateSection() DM: Added DMGet/SetCoordinateSection() Fuckup: Fix for merge that is still untangling bad rebase from Oct. 17th 2013 - Fixed const in declarations - Fixed merge from PetscFE - Fixed 2 mallocs DMDA: Missing header - Damn rebase DMPlex ex3: Added 2D Q_1 and 3D P_2 tests DMDA: Added DMDAProjectFunction() and DMDAComputeL2Diff() DMDA: Fixed 2D geometry - Should reuse DMPlex routines DMDA: Fix bug in 2D closure operation for cells DMDA: Make closure operations also return the size DMDA: Changed DMDACreateSection() to emulate DMPlexCreateSection() DMDA: Added functions which emulate DMPlex functionality DMDA: Now DMDAGetNumCells() returns the cells in each direction as well PetscFE: Added support for tensor product cells in PetscDualSpace_Lagrange PetscFE: Added tensor product polynomial spaces example fix /sandbox/petsc/petsc.clone-3/include/petscmath.h(260): error: identifier "PETSC_CXX_STATIC_INLINE" is undefined PETSC_STATIC_INLINE PetscReal PetscAbsScalar(PetscScalar a) {return a < 0.0 ? -a : a;} ^ remove warning in fun3d example "user.F", line 1256: warning: In-place macro substitution leaves line truncated "user.F", line 1259: warning: In-place macro substitution leaves line truncated "user.F", line 1262: warning: In-place macro substitution leaves line truncated /Users/petsc/petsc.clone-2/src/ksp/ksp/examples/tutorials/ex56.c:59: warning: comparison between signed and unsigned integer expressions fix examples for portability fixed to example outputs fix output for a few examples changed due to changes to -mat_view and not using -snes_monitor_short ...Conflicts: src/dm/impls/plex/plexrefine.c List of files: /petsc/systems/Apple/OSX/bin/makedocs