| /petsc/src/ts/tutorials/output/ |
| H A D | ex20adj_6.out | 1 TSTrajectorySet: stepnum 0, time 0. (stages 1)
3 TSTrajectorySet: stepnum 1, time 0.001 (stages 1)
4 TSTrajectorySet: stepnum 2, time 0.002 (stages 1)
5 TSTrajectorySet: stepnum 3, time 0.003 (stages 1)
6 TSTrajectorySet: stepnum 4, time 0.004 (stages 1)
7 TSTrajectorySet: stepnum 5, time 0.005 (stages 1)
8 TSTrajectorySet: stepnum 6, time 0.006 (stages 1)
9 TSTrajectorySet: stepnum 7, time 0.007 (stages 1)
10 TSTrajectorySet: stepnum 8, time 0.008 (stages 1)
11 TSTrajectorySet: stepnum 9, time 0.009 (stages 1)
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| H A D | ex20adj_4.out | 1 TSTrajectorySet: stepnum 0, time 0. (stages 1)
2 TSTrajectorySet: stepnum 1, time 0.001 (stages 1)
5 TSTrajectorySet: stepnum 2, time 0.002 (stages 1)
6 TSTrajectorySet: stepnum 3, time 0.003 (stages 1)
7 TSTrajectorySet: stepnum 4, time 0.004 (stages 1)
8 TSTrajectorySet: stepnum 5, time 0.005 (stages 1)
9 TSTrajectorySet: stepnum 6, time 0.006 (stages 1)
10 TSTrajectorySet: stepnum 7, time 0.007 (stages 1)
11 Store in checkpoint number 1 (located in RAM)
13 TSTrajectorySet: stepnum 8, time 0.008 (stages 1)
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| H A D | ex30_0_dirk.out | 1 ----------------------------
10 snum : 1
12 scals: (500.,0.,0.,1.)
13 ----------------------------
14 ---------- Testing Jacobian -------------
15 …Run with -snes_test_jacobian_view and optionally -snes_test_jacobian <threshold> to show difference
16 of hand-coded and finite difference Jacobian entries greater than <threshold>.
17 Testing hand-coded Jacobian, if (for double precision runs) ||J - Jfd||_F/||J||_F is
18 O(1.e-8), the hand-coded Jacobian is probably correct.
19 ||J - Jfd||_F/||J||_F = 7.63695e-14, ||J - Jfd||_F = 7.42506e-13
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| /petsc/lib/petsc/bin/ |
| H A D | petsclogformat.py | 246 return Sorted.index(a) - Sorted.index(b)
249 …Prints a simple table that displays the percent of time, flops, etc for each event in each stage'''
255 if len(localTimes) > 1:
257 print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\")
261 if len(localTimes) > 1:
262 print(" --------- Percent of ------")
271 if not numMessages: numMessages = 1
272 if not numReductions: numReductions = 1
274 for stage in sumStages:
275 if len(sumStages) > 1:
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| /petsc/src/sys/logging/state/ |
| H A D | logstate.c | 4 PetscLogStateCreate - Create a logging state.
9 . state - a `PetscLogState`
27 PetscCall(PetscLogRegistryCreate(&s->registry)); in PetscLogStateCreate()
28 PetscCall(PetscIntStackCreate(&s->stage_stack)); in PetscLogStateCreate()
29 PetscCall(PetscLogRegistryGetNumEvents(s->registry, NULL, &max_events)); in PetscLogStateCreate()
30 PetscCall(PetscLogRegistryGetNumStages(s->registry, NULL, &max_stages)); in PetscLogStateCreate()
32 …PetscCall(PetscCIntCast(max_events + 1, &s->bt_num_events)); // one extra column for default stage… in PetscLogStateCreate()
33 PetscCall(PetscCIntCast(max_stages, &s->bt_num_stages)); in PetscLogStateCreate()
34 num_entries = s->bt_num_events * s->bt_num_stages; in PetscLogStateCreate()
35 PetscCall(PetscBTCreate(num_entries, &s->active)); in PetscLogStateCreate()
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| /petsc/src/binding/petsc4py/test/ |
| H A D | test_log.py | 1 # --------------------------------------------------------------------
7 petsc4py.init(sys.argv + ['-log_view'])
9 # --------------------------------------------------------------------
14 # --------------------------------------------------------------------
21 self.stage1 = PETSc.Log.Stage('Stage 1')
22 self.stage2 = PETSc.Log.Stage('Stage 2')
27 self.event1 = PETSc.Log.Event('Event 1') # no class
35 self.assertEqual(self.event1.name, 'Event 1')
39 self.assertEqual(self.stage1.name, 'Stage 1')
40 self.assertEqual(self.stage2.name, 'Stage 2')
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| /petsc/ |
| H A D | .gitlab-ci.yml | 2 # stage-1 take only a few minutes; they do not run the full test suite or external packages.
4 # stage-2 runs on MCS systems and may take 10 to 15 minutes. They run the full test suite but with …
6 # stage-3 runs on MCS systems and may take an hour or more. They run the full test suite and heavil…
8 # The stage-(n) tests are only started if all of the stage-(n-1) tests run without error
9 # You can limit the testing by using the variable STAGE with value 1 or 2
13 - stage-1
14 - stage-2
15 - stage-3
16 - stage-4
19 GIT_CLEAN_FLAGS: -ffdxq
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| /petsc/src/sys/tests/output/ |
| H A D | ex72_0.out | 1 [0] <loghandler:nested> PetscLogHandlerNestedEventEnd(): Log event Event-2 wasn't ended, ending it …
2 [0] <loghandler:nested> PetscLogHandlerNestedEventEnd(): Log event Event-1 wasn't ended, ending it …
3 [0] <loghandler:nested> PetscLogHandlerNestedEventEnd(): Log event Event-2 wasn't ended, ending it …
4 Main Stage time_removed
5 Main Stage;User Stage time_removed
6 Main Stage;User Stage;Event-1 time_removed
7 Main Stage;User Stage;Event-1;Event-2 time_removed
8 Main Stage;Event-1 time_removed
9 Main Stage;Event-1;Event-2 time_removed
|
| /petsc/src/sys/tutorials/output/ |
| H A D | ex7_0.out | 2 [0:time_removed:PetscLogHandlerStagePush_Ex7 ] Pushing initial stage "Main Stage"
3 [0:time_removed:PetscLogHandlerEventBegin_Ex7 ] Event "Event 1" started: now running 1 times
4 …me_removed:PetscLogHandlerStagePush_Ex7 ] Pushing stage stage "Stage 1" (replacing "Main Stage…
5 [0:time_removed:PetscLogHandlerEventBegin_Ex7 ] Event "Event 2" started: now running 1 times
6 [0:time_removed:PetscLogHandlerEventSync_Ex7 ] Event "Event 1" synced: took 6.13e-07 seconds
7 [0:time_removed:PetscLogHandlerEventBegin_Ex7 ] Event "Event 1" started: now running 2 times
9 [0:time_removed:PetscLogHandlerEventEnd_Ex7 ] Event "Event 1" stopped: now running 1 times
11 [0:time_removed:PetscLogHandlerStagePop_Ex7 ] Popping stage "Stage 1" (back to "Main Stage")
12 [0:time_removed:PetscLogHandlerEventEnd_Ex7 ] Event "Event 1" stopped: now running 0 times
13 [0:time_removed:PetscLogHandlerStagePop_Ex7 ] Popping initial stage "Main Stage"
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| /petsc/src/sys/logging/handler/interface/ |
| H A D | loghandler.c | 7 PetscLogHandlerCreate - Create a log handler for profiling events and stages. PETSc
14 . comm - the communicator for synchronizing and viewing events with this handler
17 . handler - the `PetscLogHandler`
43 PetscLogHandlerDestroy - Destroy a `PetscLogHandler`
48 . handler - handler to be destroyed
62 PetscValidHeaderSpecific(h, PETSCLOGHANDLER_CLASSID, 1); in PetscLogHandlerDestroy()
63 if (--((PetscObject)h)->refct > 0) PetscFunctionReturn(PETSC_SUCCESS); in PetscLogHandlerDestroy()
65 PetscCall(PetscLogStateDestroy(&h->state)); in PetscLogHandlerDestroy()
73 …PetscLogHandlerSetState - Set the logging state that provides the stream of events and stages for …
78 + h - the `PetscLogHandler`
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| /petsc/src/binding/petsc4py/src/petsc4py/PETSc/ |
| H A D | Log.pyx | 1 # --------------------------------------------------------------------
6 # --------------------------------------------------------------------
12 def Stage(cls, name: str) -> LogStage: member in Log
13 """Create a log stage.
18 ----------
20 Stage name.
23 -------
24 stage : LogStage
25 The log stage. If a stage already exists with name ``name`` then
29 --------
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| /petsc/src/sys/logging/handler/impls/default/ |
| H A D | logdefault.c | 14 eventInfo->visible = PETSC_TRUE; in PetscEventPerfInfoInit()
15 eventInfo->id = -1; in PetscEventPerfInfoInit()
16 eventInfo->dof[0] = -1.0; in PetscEventPerfInfoInit()
17 eventInfo->dof[1] = -1.0; in PetscEventPerfInfoInit()
18 eventInfo->dof[2] = -1.0; in PetscEventPerfInfoInit()
19 eventInfo->dof[3] = -1.0; in PetscEventPerfInfoInit()
20 eventInfo->dof[4] = -1.0; in PetscEventPerfInfoInit()
21 eventInfo->dof[5] = -1.0; in PetscEventPerfInfoInit()
22 eventInfo->dof[6] = -1.0; in PetscEventPerfInfoInit()
23 eventInfo->dof[7] = -1.0; in PetscEventPerfInfoInit()
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| /petsc/src/sys/tests/ |
| H A D | ex68.c | 26 …PetscCall(PetscOptionsBool("-main_visible", "The logging visibility of the main stage", NULL, main… in main()
27 …PetscCall(PetscOptionsBool("-unrelated_visible", "The logging visibility of the unrelated stage", … in main()
33 - Pausing events should send the log data for the runtime initialization in main()
34 to the Main Stage in main()
36 - Turning the Main Stage invisible should hide it from -log_view in main()
38 So the runtime initialization should be more or less missing from -log_view. */ in main()
50 PetscCall(PetscLogStageRegister("Unrelated stage 1", &unrelated_stage_1)); in main()
51 PetscCall(PetscLogStageRegister("Unrelated stage 2", &unrelated_stage_2)); in main()
52 PetscCall(PetscLogStageGetId("Main Stage", &main_stage)); in main()
61 …PetscCheck(main_visible == get_main_visible, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Get/Set stage visib… in main()
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| /petsc/src/sys/logging/ |
| H A D | plog.c | 22 PetscInt petsc_log_gid = -1; /* Global threadId counter */
23 PETSC_TLS PetscInt petsc_log_tid = -1; /* Local threadId */
139 *cnt_th = *cnt_th + 1; in PetscAddLogDoubleCnt()
143 *cnt += *cnt + 1; in PetscAddLogDoubleCnt()
171 PetscLogGetDefaultHandler - Get the default log handler if it is running.
176 . handler - the default `PetscLogHandler`, or `NULL` if it is not running.
182 if the options flags `-log_all` or `-log_view` is given without arguments,
183 or for `-log_view :output:format` if `format` is not `ascii_xml` or `ascii_flamegraph`.
204 PetscLogGetState - Get the `PetscLogState` for PETSc's global logging, used
212 . state - The `PetscLogState` changed by registrations (such as
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| /petsc/src/dm/partitioner/impls/multistage/ |
| H A D | mspart.c | 10 …" title = {High-order accurate entropy-stable discontinuous collocated Galerkin methods with th…
24 PetscInt stage; member
26 /* Stage partitioners */
54 PetscPartitioner_MS *p = (PetscPartitioner_MS *)part->data; in PetscPartitionerView_Multistage()
66 …if (!p->stagedm || p->stage == 0) PetscCall(PetscViewerASCIIPrintf(viewer, "Multistage graph parti… in PetscPartitionerView_Multistage()
69 for (PetscInt l = 0; l < p->levels; l++) { in PetscPartitionerView_Multistage()
70 PetscPartitioner ppart = p->ppart[l]; in PetscPartitionerView_Multistage()
78 pgroup = p->lgroup[0]; in PetscPartitionerView_Multistage()
83 PetscMPIInt gr, gem = 1; in PetscPartitionerView_Multistage()
89 PetscCallMPI(MPI_Group_translate_ranks(pgroup, 1, &gem, group, &gr)); in PetscPartitionerView_Multistage()
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| /petsc/src/ksp/ksp/tutorials/output/ |
| H A D | ex39_1.out | 1 Initialization stage
4 Initialization stage: creating level 2
7 After 1 iterations residual norm is 0.056338
8 After 1 iterations Rayleigh quotient of residual is 0.040647
11 General setup stage
17 General setup stage
23 General setup stage
26 1 KSP Residual norm 0.195913
29 4 KSP Residual norm 1.43311e-05
|
| H A D | ex40_1.out | 2 Initialization stage
5 Initialization stage: creating level 2
8 After 1 iterations residual norm is 0.018022
9 After 1 iterations Rayleigh quotient of residual is 0.041788
12 General setup stage
18 General setup stage
24 General setup stage
27 1 KSP Residual norm 0.30398
32 6 KSP Residual norm 4.85307e-06
|
| H A D | ex38_1.out | 1 Initialization stage
4 Initialization stage: creating level 2
7 After 1 iterations residual norm is 0.001562
8 After 1 iterations Rayleigh quotient of residual is 0.013884
15 General setup stage
19 1 KSP Residual norm < 1.e-11
|
| /petsc/src/ts/impls/implicit/glle/ |
| H A D | glle.h | 13 PetscInt q; /* stage-order of the method */
20 PetscScalar *alpha; /* X_n(t_n) - X_{n-1}(t_n) = - alpha^T h^{p+1} x^{(p+1)}(t_n) */
21 PetscScalar *beta; /* - beta^T h^{p+2} x^{(p+2)}(t_n) */
22 PetscScalar *gamma; /* - gamma^T h^{p+2} f' x^{(p+1)}(t_n) + O(h^{p+3}) */
25 /* h^{p+1}x^{(p+1)}(t_n) ~= phi[0]*h*Ydot + psi[0]*X[1:] */
26 /* h^{p+2}x^{(p+2)}(t_n) ~= phi[1]*h*Ydot + psi[1]*X[1:] */
27 /* h^{p+2}f' x^{(p+1)}(t_n) ~= phi[2]*h*Ydot + psi[2]*X[1:] */
29 PetscScalar *psi; /* dim=[3][r-1], [0 psi^T] of B,J,W 2007 */
34 PetscBool fsal; /* First Same As Last: X[1] = h*Ydot[s-1] (and stiffly accurate) */
41 …re only stored so that they can be printed in TSView_GLLE() without making these schemes full-blown
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| /petsc/src/sys/logging/handler/impls/perfstubs/ |
| H A D | logperfstubs.c | 27 PetscCall(PetscLogPSArrayCreate(128, &ps->events)); in PetscLogHandlerContextCreate_Perfstubs()
28 PetscCall(PetscLogPSArrayCreate(8, &ps->stages)); in PetscLogHandlerContextCreate_Perfstubs()
35 PetscLogHandler_Perfstubs ps = (PetscLogHandler_Perfstubs)h->data; in PetscLogHandlerDestroy_Perfstubs()
38 PetscCall(PetscLogPSArrayGetSize(ps->events, &num_events, NULL)); in PetscLogHandlerDestroy_Perfstubs()
42 PetscCall(PetscLogPSArrayGet(ps->events, i, &event)); in PetscLogHandlerDestroy_Perfstubs()
45 PetscCall(PetscLogPSArrayDestroy(&ps->events)); in PetscLogHandlerDestroy_Perfstubs()
47 PetscCall(PetscLogPSArrayGetSize(ps->stages, &num_stages, NULL)); in PetscLogHandlerDestroy_Perfstubs()
49 PetscEventPS stage = {NULL, 0}; in PetscLogHandlerDestroy_Perfstubs() local
51 PetscCall(PetscLogPSArrayGet(ps->stages, i, &stage)); in PetscLogHandlerDestroy_Perfstubs()
52 PetscStackCallExternalVoid("ps_timer_destroy_", ps_timer_destroy_(stage.timer)); in PetscLogHandlerDestroy_Perfstubs()
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| /petsc/src/benchmarks/ |
| H A D | benchmarkExample.py | 61 …pipe = Popen(command, cwd=cwd, stdin=None, stdout=PIPE, stderr=PIPE, bufsize=-1, shell=True, unive…
71 a.append('-'+key)
73 a.append('-'+key+' '+str(value))
98 def run(self, numProcs = 1, log = True, **opts):
103 cmd += ' -n ' + str(numProcs) + ' '
105 cmd += ' -hostfile hostfile '
112 out, err, ret = self.runShellCommand('qsub -q gpu '+filename, log = log)
131 stageName = row["Stage Name"]
159 stageName, name = name.split(':', 1)
162 stage = m.Stages[stageName]
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| /petsc/src/ts/impls/explicit/rk/ |
| H A D | rk.h | 10 PetscReal *bembed; /* Embedded formula of order one less (order-1) */
25 …Vec *YdotRHS; /* Function evaluations for the non-stiff part and contains all compone…
26 …Vec *YdotRHS_fast; /* Function evaluations for the non-stiff part and contains fast compon…
27 …Vec *YdotRHS_slow; /* Function evaluations for the non-stiff part and contains slow compon…
28 …Vec *VecsDeltaLam; /* Increment of the adjoint sensitivity w.r.t IC at stage …
30 …Vec VecDeltaMu; /* Increment of the adjoint sensitivity w.r.t P at stage …
31 Vec *VecsDeltaLam2; /* Increment of the 2nd-order adjoint sensitivity w.r.t IC at stage */
32 Vec VecDeltaMu2; /* Increment of the 2nd-order adjoint sensitivity w.r.t P at stage */
35 …PetscInt slow; /* flag indicates call slow components solver (0) or fast components solver (1)…
|
| /petsc/src/snes/impls/ms/ |
| H A D | ms.c | 15 PetscReal *betasub; /* Subdiagonal of beta in Shu-Osher form */
26 SNESMSTableau tableau; /* Tableau in low-storage form */
31 SNESMSRegisterAll - Registers all of the multi-stage methods in `SNESMS`
46 PetscReal alpha[1] = {1.0}; in SNESMSRegisterAll()
47 PetscCall(SNESMSRegister(SNESMSEULER, 1, 1, 1.0, NULL, NULL, alpha)); in SNESMSRegisterAll()
52 …0000000000E+00, -7.0304722367110606E-01, -1.9836719667506464E-01, -1.6023843981863788E+00, 9.44838… in SNESMSRegisterAll()
53 …025767083920E+00, 5.6150921583923230E-01, 7.4151723494934041E-01, 3.1714538168600587E-01, 4.64… in SNESMSRegisterAll()
54 …+00, 0.0000000000000000E+00, 6.7968174970583317E-01, -4.1755042846051737E-03, -1.91156681299238… in SNESMSRegisterAll()
56 …000000000000000E+00, 5.3275427433201750E-01, 6.0143544663985238E-01, 4.5874077053842177E-01, 2.754… in SNESMSRegisterAll()
57 …753115429481929E-01, 7.4018896368655618E-01, 6.5963574086583309E-03, 4.6747795645517759E-01, 1.331… in SNESMSRegisterAll()
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| /petsc/src/sys/logging/handler/impls/nested/ |
| H A D | lognested.c | 7 PetscLogHandler_Nested nested = (PetscLogHandler_Nested)h->data; in PetscLogHandlerNestedSetThreshold()
10 if (oldThresh) *oldThresh = nested->threshold; in PetscLogHandlerNestedSetThreshold()
13 nested->threshold = PetscMax(newThresh, 0.0); in PetscLogHandlerNestedSetThreshold()
19 PetscLogHandler_Nested nested = (PetscLogHandler_Nested)h->data; in PetscLogEventGetNestedEvent()
27 PetscCall(PetscIntStackTop(nested->nested_stack, &key.root)); in PetscLogEventGetNestedEvent()
29 PetscCall(PetscNestedHashPut(nested->pair_map, key, &iter, &missing)); in PetscLogEventGetNestedEvent()
37 PetscCall(PetscLogStateEventGetInfo(nested->state, key.root, &nested_event_info)); in PetscLogEventGetNestedEvent()
38 …PetscCall(PetscSNPrintf(name, sizeof(name) - 1, "%s;%s", nested_event_info.name, event_info.name)); in PetscLogEventGetNestedEvent()
39 PetscCall(PetscLogStateEventRegister(nested->state, name, event_info.classid, nested_event)); in PetscLogEventGetNestedEvent()
40 PetscCall(PetscLogStateEventSetCollective(nested->state, *nested_event, event_info.collective)); in PetscLogEventGetNestedEvent()
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| /petsc/src/dm/impls/plex/tests/ |
| H A D | ex9.c | 30 options->dim = 2; in ProcessOptions()
31 options->cellSimplex = PETSC_TRUE; in ProcessOptions()
32 options->spectral = PETSC_FALSE; in ProcessOptions()
33 options->interpolate = PETSC_FALSE; in ProcessOptions()
34 options->refinementLimit = 0.0; in ProcessOptions()
35 options->numFields = 0; in ProcessOptions()
36 options->numComponents = NULL; in ProcessOptions()
37 options->numDof = NULL; in ProcessOptions()
38 options->reuseArray = PETSC_FALSE; in ProcessOptions()
39 options->errors = PETSC_FALSE; in ProcessOptions()
[all …]
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