| /libCEED/examples/solids/ |
| H A D | Makefile | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| H A D | elasticity.h | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| H A D | elasticity.c | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| /libCEED/doc/sphinx/ |
| H A D | requirements.txt | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| /libCEED/doc/sphinx/source/ |
| H A D | conf.py | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| H A D | references.bib | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|
| /libCEED/ |
| H A D | Makefile | 8355605fb12655f53893674f518ac7968aa830ae Fri Jul 30 21:58:00 UTC 2021 Karen (Ren) Stengel <karenlstengel@gmail.com> Mooney-Rivlin model (#794)
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* WIP: Notes on using finite differencing for dS
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* remove extra print statement
* added coulped MR FSInitial-MRc qfunction
* MR coupled version doc update
* refactored MR to work with current version of main. Updated doc with dS for MR
* fixed documentation formatting
* update dS for MR in documentation
* cleaning up MR dS equations and wording
* minor changes in doc
* MR dS draft 1"
* MR coded, jacobian diverging
* added FSInitial-MR1.h
* fixed call option
* NH no longer needs mu_1 option
* processphysics and upated naming scheme
* added print strain at every increment cl option
* MR cleaned. started CSV file but not quite there
* examples/solids: write csv file
can be read using pandas:
In [2]: pd.read_csv('test.csv')
Out[2]:
increment energy
0 0.000000 0.000000
1 0.066667 0.002402
[...]
* examples/solids: add targets for CSV logging and Altair chart
The MR data is currently hacked because it isn't converging as I'd expect.
* fixed style
* solids/doc: added derivation of dS for MR
* added analytical dS in Jacobian evaluation
* fixed style
* updated doc and energy plot for MR
* MR almost done
* started removing integer division
* got rid of all integer divisions
* missed some 1/3
* fixed some typo
* rerunning plot files
* Mooney-Rivlin coupled model
* some minor changes
* Mooney-Rivlin coupled model
* some clean-up and update
* clean-up, rebased
* examples/solids: revise docs/derivation and fix Newton
The (fixed) Newton linearization yields an indefinite operator causing
Newton to fail (so output/MR-strain1.csv is broken). This can be handled
by switching to minres, but a better solution would be nice.
* format: added newlines and removed unused/commented code blocks
* doc: removed GP model dropdown.
* examples/solids: Mooney-Rivlin docs/notation
* examples/solids: Mooney-Rivlin notation and experimental configuration
* examples/solids: process -dm_plex_box_faces with PETSc main
* make style
* examples/solids: syntax fix and minor cleanup
* make style
* doc: fixing Holzapfel ref in Mooney-Rivlin
* added TESTARGS for Mooney-Rivlin
* fixed TESTARGS for MR
* tests/tap.sh: make test for solids examples with names
* WIP: adding test option. added -expect_final_strain_energy and RegressionTests_solids function but not sure how to actually pull the reference strain energy from the reference file
* examples/solids: add regression tests using expected strain energy
* examples/solids: error on MMS with model that does not provide manufactured solutions
* examples/solids: fix HIP via CEED_QFUNCTION_HELPER
* update in-line comments
* changed as Jeremy suggested
* examples/solids: make style
Co-authored-by: Rezgar Shakeri <Rezgar.Shakeri@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
|