xref: /honee/examples/navierstokes.c (revision d114cded06aa31386422f7df75c9dc124f37a0f3)
1ae2b091fSJames Wright // SPDX-FileCopyrightText: Copyright (c) 2017-2024, HONEE contributors.
2ae2b091fSJames Wright // SPDX-License-Identifier: Apache-2.0 OR BSD-2-Clause
3149fb536SJames Wright 
4149fb536SJames Wright //                        libCEED + PETSc Example: Navier-Stokes
5149fb536SJames Wright //
6149fb536SJames Wright // This example demonstrates a simple usage of libCEED with PETSc to solve a Navier-Stokes problem.
7149fb536SJames Wright //
8149fb536SJames Wright // Build with:
9149fb536SJames Wright //
10149fb536SJames Wright //     make [PETSC_DIR=</path/to/petsc>] [CEED_DIR=</path/to/libceed>] navierstokes
11149fb536SJames Wright //
12149fb536SJames Wright // Sample runs:
13149fb536SJames Wright //
14149fb536SJames Wright //     ./navierstokes -ceed /cpu/self -options_file gaussianwave.yml
15149fb536SJames Wright //     ./navierstokes -ceed /gpu/cuda -problem advection -degree 1
16149fb536SJames Wright //
173da913d1SJames Wright //TESTARGS(name="Flat Plate STG",only="cpu") -ceed {ceed_resource} -options_file examples/flatplate_STG.yaml -dm_plex_box_faces 3,63,3 -dm_plex_box_upper -3.082,2.4,.00726 -ts_max_steps 1 -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-flatplate-STG.bin
1880e9ac5bSJames Wright //TESTARGS(name="Advection 2D, boundary layer IC",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/advection_bl.yaml -dm_plex_box_faces 3,3 -ts_max_steps 0 -advection_ic_bl_height_factor 0.5 -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-boundary-layer-ic.bin
19141134f8SJames Wright //TESTARGS(name="Advection 2D, implicit square wave, direct div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -snes_mf -snes_fd -ts_type alpha -dm_plex_box_faces 5,5 -ts_max_steps 5 -diffusion_coeff 5e-3 -div_diff_flux_projection_method direct -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-square-direct_divdiff.bin
20141134f8SJames Wright //TESTARGS(name="Advection 2D, explicit square wave, indirect div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -ts_max_steps 5 -dm_plex_box_faces 5,5 -diffusion_coeff 1e-2 -Ctau_d 2 -div_diff_flux_projection_method indirect -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-square-indirect_divdiff.bin
2180e9ac5bSJames Wright //TESTARGS(name="Advection 2D, sine wave IC",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -ts_max_steps 0 -dm_plex_box_faces 3,3 -advection_ic_wave_type sine -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-sine.bin
22149fb536SJames Wright //TESTARGS(name="Newtonian and Riemann Solver Unit Tests",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e100 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL-entropy.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 0 -newtonian_unit_tests -riemann_solver_unit_tests
23149fb536SJames Wright //TESTARGS(name="Gaussian Wave, IDL and Entropy variables") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL-entropy.bin -state_var entropy -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -idl_pressure 70
245ba826a2SJames Wright //TESTARGS(name="Blasius, SGS DataDriven Sequential Torch",only="torch") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin -sgs_model_dd_implementation sequential_torch -sgs_model_dd_torch_model_path ./tests/createPyTorchModel/NNModel_HIT_fp64_jit.pt
255ba826a2SJames Wright //TESTARGS(name="Blasius, SGS DataDriven Sequential Ceed") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin -sgs_model_dd_implementation sequential_ceed
26149fb536SJames Wright //TESTARGS(name="Gaussian Wave, explicit, supg, IDL") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e-8 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-explicit.bin -dm_plex_box_faces 2,2,1 -ts_max_steps 5 -degree 3 -implicit false -ts_type rk -stab supg -state_var conservative -mass_ksp_type gmres -mass_pc_jacobi_type diagonal -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -idl_pressure 70
2780e9ac5bSJames Wright //TESTARGS(name="Advection 2D, rotation, explicit, supg, consistent mass") -ceed {ceed_resource} -test_type solver -problem advection -degree 3 -dm_plex_box_faces 2,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ts_dt 1e-3 -ts_max_steps 10 -stab supg -Ctaus 0.5 -mass_ksp_type gmres -mass_pc_type vpbjacobi -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-explicit-stab-supg-consistent-mass.bin
28fbabb365SJames Wright //TESTARGS(name="Advection, skew") -ceed {ceed_resource} -test_type solver -options_file examples/advection.yaml -ts_max_steps 5 -wind_type translation -wind_translation -0.5547002,0.83205029,0 -advection_ic_type skew  -dm_plex_box_faces 2,1,1 -degree 2 -stab supg -stab_tau advdiff_shakib -Ctau_a 4 -Ctau_d 0 -ksp_type gmres -diffusion_coeff 5e-4 -compare_final_state_atol 7e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-skew.bin
298c85b835SJames Wright //TESTARGS(name="Blasius, bc_slip, Indirect Diffusive Flux Projection") -ceed {ceed_resource} -test_type solver -options_file examples/blasius.yaml -ts_max_steps 5 -dm_plex_box_faces 3,20,1 -platemesh_nDelta 10 -platemesh_growth 1.2 -bc_outflow 5 -bc_slip 4 -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-bc_slip_indirect.bin -div_diff_flux_projection_method indirect
308c85b835SJames Wright //TESTARGS(name="Blasius, bc_slip, Direct Diffusive Flux Projection") -ceed {ceed_resource} -test_type solver -options_file examples/blasius.yaml -ts_max_steps 5 -dm_plex_box_faces 3,20,1 -platemesh_nDelta 10 -platemesh_growth 1.2 -bc_outflow 5 -bc_slip 4 -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-bc_slip.bin -div_diff_flux_projection_method direct
31141134f8SJames Wright //TESTARGS(name="Advection, rotation, cosine, direct div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection.yaml -ts_max_steps 5 -advection_ic_type cosine_hill -dm_plex_box_faces 2,2,1 -diffusion_coeff 5e-3 -div_diff_flux_projection_method direct -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-rotation-cosine.bin
32149fb536SJames Wright //TESTARGS(name="Gaussian Wave, using MatShell") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e-8 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-shell.bin -dm_plex_box_faces 2,2,1 -ts_max_steps 5 -degree 3 -amat_type shell -pc_type vpbjacobi -ts_alpha_radius 0.5
33149fb536SJames Wright //TESTARGS(name="Taylor-Green Vortex IC") -ceed {ceed_resource} -problem taylor_green -test_type solver -dm_plex_dim 3 -dm_plex_box_faces 6,6,6 -ts_max_steps 0 -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-taylor-green-IC.bin
345ba826a2SJames Wright //TESTARGS(name="Blasius, SGS DataDriven Fused") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin
35149fb536SJames Wright //TESTARGS(name="Blasius, Anisotropic Differential Filter") -ceed {ceed_resource} -test_type diff_filter -options_file tests/blasius_test.yaml -compare_final_state_atol 5e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_diff_filter_aniso_vandriest.bin -diff_filter_monitor -ts_max_steps 0 -state_var primitive -diff_filter_friction_length 1e-5 -diff_filter_wall_damping_function van_driest -diff_filter_ksp_rtol 1e-8 -diff_filter_grid_based_width -diff_filter_width_scaling 1,0.7,1
36149fb536SJames Wright //TESTARGS(name="Blasius, Isotropic Differential Filter") -ceed {ceed_resource} -test_type diff_filter -options_file tests/blasius_test.yaml -compare_final_state_atol 2e-12 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_diff_filter_iso.bin -diff_filter_monitor -ts_max_steps 0 -diff_filter_width_scaling 4.2e-5,4.2e-5,4.2e-5 -diff_filter_ksp_atol 1e-14 -diff_filter_ksp_rtol 1e-16
37149fb536SJames Wright //TESTARGS(name="Gaussian Wave, with IDL") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -ts_alpha_radius 0.5 -idl_pressure 70
38149fb536SJames Wright //TESTARGS(name="Spanwise Turbulence Statistics") -ceed {ceed_resource} -test_type turb_spanstats -options_file tests/stats_test.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-turb-spanstats-stats.bin
39149fb536SJames Wright //TESTARGS(name="Blasius") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_test.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius.bin
40149fb536SJames Wright //TESTARGS(name="Blasius, STG Inflow") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG.bin
41149fb536SJames Wright //TESTARGS(name="Blasius, STG Inflow, Weak Temperature") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG_weakT.bin -weakT
42149fb536SJames Wright //TESTARGS(name="Blasius, Strong STG Inflow") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 1E-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG_strongBC.bin -stg_strong true
43149fb536SJames Wright //TESTARGS(name="Channel") -ceed {ceed_resource} -test_type solver -options_file examples/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-channel.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5
44149fb536SJames Wright //TESTARGS(name="Channel, Primitive") -ceed {ceed_resource} -test_type solver -options_file examples/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-channel-prim.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -state_var primitive
45149fb536SJames Wright //TESTARGS(name="Density Current, explicit") -ceed {ceed_resource} -test_type solver -degree 3 -q_extra 2 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -gravity 0,0,-9.81 -ts_dt 1e-3 -units_meter 1e-2 -units_second 1e-2 -ts_max_steps 10 -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-dc-explicit.bin
46149fb536SJames Wright //TESTARGS(name="Density Current, implicit, no stabilization") -ceed {ceed_resource} -test_type solver -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -gravity 0,0,-9.81 -units_meter 1e-2 -units_second 1e-2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-dc-implicit-stab-none.bin
4780e9ac5bSJames Wright //TESTARGS(name="Advection, rotation, implicit, SUPG stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_wall 1,2,3,4,5,6 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -compare_final_state_atol 5E-4 -ts_max_steps 10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-rotation-implicit-stab-supg.bin
4880e9ac5bSJames Wright //TESTARGS(name="Advection, translation, implicit, SU stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab su -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -wind_type translation -wind_translation .53,-1.33,-2.65 -bc_inflow 1,2,3,4,5,6 -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-adv-translation-implicit-stab-su.bin
4980e9ac5bSJames Wright //TESTARGS(name="Advection 2D, rotation, explicit, strong form") -ceed {ceed_resource} -test_type solver -problem advection -strong_form 1 -degree 3 -dm_plex_box_faces 2,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ts_dt 1e-3 -compare_final_state_atol 5E-11 -ts_max_steps 10 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-explicit-strong.bin
5080e9ac5bSJames Wright //TESTARGS(name="Advection 2D, rotation, implicit, SUPG stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-implicit-stab-supg.bin
51149fb536SJames Wright //TESTARGS(name="Euler, implicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_symmetry_z 1,2 -vortex_strength 2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-euler-implicit.bin
52149fb536SJames Wright //TESTARGS(name="Euler, explicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -q_extra 2 -dm_plex_box_faces 2,2,1 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_symmetry_z 1,2 -vortex_strength 2 -ts_dt 1e-7 -ts_rk_type 5bs -ts_rtol 1e-10 -ts_atol 1e-10 -ts_max_steps 10 -compare_final_state_atol 1E-7 -compare_final_state_filename tests/output/fluids-navierstokes-euler-explicit.bin
53149fb536SJames Wright //TESTARGS(name="Sod Shocktube, explicit, SU stabilization, y-z-beta shock capturing") -ceed {ceed_resource} -test_type solver -problem shocktube -degree 1 -q_extra 2 -dm_plex_box_faces 50,1,1 -units_meter 1e-2 units_second 1e-2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 1000,20,20 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -yzb -stab su -ts_max_steps 10 -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-shocktube-explicit-su-yzb.bin
54149fb536SJames Wright 
55149fb536SJames Wright /// @file
56149fb536SJames Wright /// Navier-Stokes example using PETSc
57149fb536SJames Wright 
58149fb536SJames Wright const char help[] = "Solve Navier-Stokes using PETSc and libCEED\n";
59149fb536SJames Wright 
60149fb536SJames Wright #include <navierstokes.h>
61149fb536SJames Wright #include <petscdevice.h>
62149fb536SJames Wright 
63149fb536SJames Wright #include <ceed.h>
64149fb536SJames Wright #include <petscdmplex.h>
65149fb536SJames Wright #include <petscts.h>
66149fb536SJames Wright 
67149fb536SJames Wright int main(int argc, char **argv) {
68149fb536SJames Wright   // ---------------------------------------------------------------------------
69149fb536SJames Wright   // Initialize PETSc
70149fb536SJames Wright   // ---------------------------------------------------------------------------
71149fb536SJames Wright   PetscCall(PetscInitialize(&argc, &argv, NULL, help));
72149fb536SJames Wright 
73149fb536SJames Wright   // ---------------------------------------------------------------------------
74149fb536SJames Wright   // Create structs
75149fb536SJames Wright   // ---------------------------------------------------------------------------
76149fb536SJames Wright   AppCtx app_ctx;
77149fb536SJames Wright   PetscCall(PetscCalloc1(1, &app_ctx));
78149fb536SJames Wright 
79149fb536SJames Wright   ProblemData problem;
80149fb536SJames Wright   PetscCall(PetscCalloc1(1, &problem));
81149fb536SJames Wright 
820c373b74SJames Wright   Honee honee;
830c373b74SJames Wright   PetscCall(PetscCalloc1(1, &honee));
84149fb536SJames Wright 
85149fb536SJames Wright   SimpleBC bc;
86149fb536SJames Wright   PetscCall(PetscCalloc1(1, &bc));
87149fb536SJames Wright 
88149fb536SJames Wright   Physics phys_ctx;
89149fb536SJames Wright   PetscCall(PetscCalloc1(1, &phys_ctx));
90149fb536SJames Wright 
91149fb536SJames Wright   Units units;
92149fb536SJames Wright   PetscCall(PetscCalloc1(1, &units));
93149fb536SJames Wright 
940c373b74SJames Wright   honee->app_ctx           = app_ctx;
950c373b74SJames Wright   honee->units             = units;
960c373b74SJames Wright   honee->phys              = phys_ctx;
97149fb536SJames Wright   problem->set_bc_from_ics = PETSC_TRUE;
98149fb536SJames Wright 
99149fb536SJames Wright   PetscCall(RegisterLogEvents());
100149fb536SJames Wright 
101149fb536SJames Wright   // ---------------------------------------------------------------------------
102149fb536SJames Wright   // Process command line options
103149fb536SJames Wright   // ---------------------------------------------------------------------------
104149fb536SJames Wright   // -- Register problems to be available on the command line
105149fb536SJames Wright   PetscCall(RegisterProblems_NS(app_ctx));
106149fb536SJames Wright 
107149fb536SJames Wright   // -- Process general command line options
108149fb536SJames Wright   MPI_Comm comm = PETSC_COMM_WORLD;
1090c373b74SJames Wright   honee->comm   = comm;
110149fb536SJames Wright   PetscCall(ProcessCommandLineOptions(comm, app_ctx, bc));
1110c373b74SJames Wright   PetscCall(BoundaryConditionSetUp(honee, problem, app_ctx, bc));
112149fb536SJames Wright 
113149fb536SJames Wright   // ---------------------------------------------------------------------------
114149fb536SJames Wright   // Initialize libCEED
115149fb536SJames Wright   // ---------------------------------------------------------------------------
116149fb536SJames Wright   // -- Initialize backend
117149fb536SJames Wright   Ceed ceed;
118149fb536SJames Wright   PetscCheck(CeedInit(app_ctx->ceed_resource, &ceed) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Ceed initialization failed");
1190c373b74SJames Wright   honee->ceed = ceed;
120149fb536SJames Wright 
121149fb536SJames Wright   PetscCheck(CeedSetErrorHandler(ceed, CeedErrorStore) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Setting libCEED error handler failed");
122149fb536SJames Wright 
123149fb536SJames Wright   // -- Check preferred MemType
124149fb536SJames Wright   CeedMemType mem_type_backend;
125149fb536SJames Wright   PetscCallCeed(ceed, CeedGetPreferredMemType(ceed, &mem_type_backend));
126149fb536SJames Wright 
127149fb536SJames Wright   {
128149fb536SJames Wright     const char *resource;
129149fb536SJames Wright     PetscCallCeed(ceed, CeedGetResource(ceed, &resource));
130149fb536SJames Wright     if (strstr(resource, "/gpu/sycl")) {
131149fb536SJames Wright       PetscDeviceContext dctx;
132149fb536SJames Wright       PetscCall(PetscDeviceContextGetCurrentContext(&dctx));
133149fb536SJames Wright       void *stream_handle;
134149fb536SJames Wright       PetscCall(PetscDeviceContextGetStreamHandle(dctx, &stream_handle));
135149fb536SJames Wright       PetscCallCeed(ceed, CeedSetStream(ceed, stream_handle));
136149fb536SJames Wright     }
137149fb536SJames Wright   }
138149fb536SJames Wright 
139149fb536SJames Wright   // ---------------------------------------------------------------------------
140149fb536SJames Wright   // Set up global mesh
141149fb536SJames Wright   // ---------------------------------------------------------------------------
142149fb536SJames Wright   // -- Create DM
143149fb536SJames Wright   DM      dm;
144149fb536SJames Wright   VecType vec_type = NULL;
145149fb536SJames Wright   MatType mat_type = NULL;
146149fb536SJames Wright   switch (mem_type_backend) {
147149fb536SJames Wright     case CEED_MEM_HOST:
148149fb536SJames Wright       vec_type = VECSTANDARD;
149149fb536SJames Wright       break;
150149fb536SJames Wright     case CEED_MEM_DEVICE: {
151149fb536SJames Wright       const char *resolved;
152149fb536SJames Wright       PetscCallCeed(ceed, CeedGetResource(ceed, &resolved));
153149fb536SJames Wright       if (strstr(resolved, "/gpu/cuda")) vec_type = VECCUDA;
154149fb536SJames Wright       else if (strstr(resolved, "/gpu/hip")) vec_type = VECKOKKOS;
155149fb536SJames Wright       else if (strstr(resolved, "/gpu/sycl")) vec_type = VECKOKKOS;
156149fb536SJames Wright       else vec_type = VECSTANDARD;
157149fb536SJames Wright     }
158149fb536SJames Wright   }
159149fb536SJames Wright   if (strstr(vec_type, VECCUDA)) mat_type = MATAIJCUSPARSE;
160149fb536SJames Wright   else if (strstr(vec_type, VECKOKKOS)) mat_type = MATAIJKOKKOS;
161149fb536SJames Wright   else mat_type = MATAIJ;
162149fb536SJames Wright   PetscCall(CreateDM(comm, problem, mat_type, vec_type, &dm));
1630c373b74SJames Wright   honee->dm = dm;
1640c373b74SJames Wright   PetscCall(DMSetApplicationContext(dm, honee));
165149fb536SJames Wright 
166149fb536SJames Wright   // ---------------------------------------------------------------------------
167149fb536SJames Wright   // Choose the problem from the list of registered problems
168149fb536SJames Wright   // ---------------------------------------------------------------------------
169149fb536SJames Wright   {
170149fb536SJames Wright     PetscErrorCode (*p)(ProblemData, DM, void *, SimpleBC);
171149fb536SJames Wright     PetscCall(PetscFunctionListFind(app_ctx->problems, app_ctx->problem_name, &p));
172149fb536SJames Wright     PetscCheck(p, PETSC_COMM_SELF, 1, "Problem '%s' not found", app_ctx->problem_name);
1730c373b74SJames Wright     PetscCall((*p)(problem, dm, &honee, bc));
174149fb536SJames Wright   }
175149fb536SJames Wright 
176149fb536SJames Wright   // -- Set up DM
177149fb536SJames Wright   PetscCall(SetUpDM(dm, problem, app_ctx->degree, app_ctx->q_extra, bc, phys_ctx));
178149fb536SJames Wright 
179149fb536SJames Wright   // -- Refine DM for high-order viz
1800c373b74SJames Wright   if (app_ctx->viz_refine) PetscCall(VizRefineDM(dm, honee, problem, bc, phys_ctx));
181149fb536SJames Wright 
182149fb536SJames Wright   // ---------------------------------------------------------------------------
183149fb536SJames Wright   // Create solution vectors
184149fb536SJames Wright   // ---------------------------------------------------------------------------
185149fb536SJames Wright   // -- Set up global state vector Q
186149fb536SJames Wright   Vec Q;
187149fb536SJames Wright   PetscCall(DMCreateGlobalVector(dm, &Q));
188149fb536SJames Wright   PetscCall(VecZeroEntries(Q));
189149fb536SJames Wright 
190149fb536SJames Wright   // -- Set up local state vectors Q_loc, Q_dot_loc
1910c373b74SJames Wright   PetscCall(DMCreateLocalVector(dm, &honee->Q_loc));
1920c373b74SJames Wright   PetscCall(DMCreateLocalVector(dm, &honee->Q_dot_loc));
1930c373b74SJames Wright   PetscCall(VecZeroEntries(honee->Q_dot_loc));
194149fb536SJames Wright 
195149fb536SJames Wright   // ---------------------------------------------------------------------------
196149fb536SJames Wright   // Set up libCEED
197149fb536SJames Wright   // ---------------------------------------------------------------------------
198149fb536SJames Wright   // -- Set up libCEED objects
199e3663b90SJames Wright   PetscCall(SetupLibceed(ceed, dm, honee, app_ctx, problem, bc));
200149fb536SJames Wright 
201149fb536SJames Wright   // ---------------------------------------------------------------------------
202149fb536SJames Wright   // Set up ICs
203149fb536SJames Wright   // ---------------------------------------------------------------------------
204149fb536SJames Wright   // -- Fix multiplicity for ICs
205e3663b90SJames Wright   PetscCall(ICs_FixMultiplicity(dm, honee, honee->Q_loc, Q, 0.0));
206149fb536SJames Wright 
207149fb536SJames Wright   // ---------------------------------------------------------------------------
208149fb536SJames Wright   // Record boundary values from initial condition
209149fb536SJames Wright   // ---------------------------------------------------------------------------
210149fb536SJames Wright   // -- This overrides DMPlexInsertBoundaryValues().
211149fb536SJames Wright   //    We use this for the main simulation DM because the reference DMPlexInsertBoundaryValues() is very slow on the GPU due to extra device-to-host
212149fb536SJames Wright   //    communication. If we disable this, we should still get the same results due to the problem->bc function, but with potentially much slower
213149fb536SJames Wright   //    execution.
214149fb536SJames Wright   if (problem->set_bc_from_ics) {
2150c373b74SJames Wright     PetscCall(SetBCsFromICs(dm, Q, honee->Q_loc));
216149fb536SJames Wright   }
217149fb536SJames Wright 
218149fb536SJames Wright   // ---------------------------------------------------------------------------
219149fb536SJames Wright   // Create output directory
220149fb536SJames Wright   // ---------------------------------------------------------------------------
221149fb536SJames Wright   PetscMPIInt rank;
222149fb536SJames Wright   MPI_Comm_rank(comm, &rank);
223149fb536SJames Wright   if (!rank) {
224149fb536SJames Wright     PetscCall(PetscMkdir(app_ctx->output_dir));
225149fb536SJames Wright   }
226149fb536SJames Wright 
227149fb536SJames Wright   // ---------------------------------------------------------------------------
228149fb536SJames Wright   // Gather initial Q values in case of continuation of simulation
229149fb536SJames Wright   // ---------------------------------------------------------------------------
230149fb536SJames Wright   // -- Set up initial values from binary file
231481d14cbSJames Wright   if (app_ctx->use_continue_file) {
232*d114cdedSJames Wright     PetscCall(HoneeLoadInitialCondition(app_ctx->cont_file, &app_ctx->cont_steps, &app_ctx->cont_time, Q));
233149fb536SJames Wright   }
234149fb536SJames Wright 
235149fb536SJames Wright   // -- Zero Q_loc
2360c373b74SJames Wright   PetscCall(VecZeroEntries(honee->Q_loc));
237149fb536SJames Wright 
238149fb536SJames Wright   // ---------------------------------------------------------------------------
239149fb536SJames Wright   // TS: Create, setup, and solve
240149fb536SJames Wright   // ---------------------------------------------------------------------------
241149fb536SJames Wright   TS          ts;
242149fb536SJames Wright   PetscScalar final_time;
2430c373b74SJames Wright   PetscCall(TSSolve_NS(dm, honee, app_ctx, phys_ctx, problem, &Q, &final_time, &ts));
244149fb536SJames Wright 
245149fb536SJames Wright   // ---------------------------------------------------------------------------
246149fb536SJames Wright   // Post-processing
247149fb536SJames Wright   // ---------------------------------------------------------------------------
248e3663b90SJames Wright   PetscCall(PostProcess(ts, dm, problem, honee, Q, final_time));
249149fb536SJames Wright 
250149fb536SJames Wright   // ---------------------------------------------------------------------------
251149fb536SJames Wright   // Destroy libCEED objects
252149fb536SJames Wright   // ---------------------------------------------------------------------------
253149fb536SJames Wright 
254e3663b90SJames Wright   PetscCall(TurbulenceStatisticsDestroy(honee));
2550c373b74SJames Wright   PetscCall(NodalProjectionDataDestroy(honee->grad_velo_proj));
2560c373b74SJames Wright   PetscCall(SgsDDDataDestroy(honee->sgs_dd_data));
2570c373b74SJames Wright   PetscCall(DifferentialFilterDataDestroy(honee->diff_filter));
2580c373b74SJames Wright   PetscCall(SGS_DD_TrainingDataDestroy(honee->sgs_dd_train));
2590c373b74SJames Wright   PetscCall(SmartSimDataDestroy(honee->smartsim));
260e816a7e4SJames Wright   PetscCall(QDataClearStoredData());
2610c373b74SJames Wright   PetscCall(DivDiffFluxProjectionDataDestroy(honee->diff_flux_proj));
262149fb536SJames Wright 
263149fb536SJames Wright   // -- Vectors
264e3663b90SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->x_coord));
2650c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->q_ceed));
2660c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->q_dot_ceed));
2670c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->g_ceed));
268149fb536SJames Wright 
269149fb536SJames Wright   // -- Bases
270e3663b90SJames Wright   PetscCallCeed(ceed, CeedBasisDestroy(&honee->basis_q));
271e3663b90SJames Wright   PetscCallCeed(ceed, CeedBasisDestroy(&honee->basis_x));
272149fb536SJames Wright 
273149fb536SJames Wright   // -- Restrictions
274e3663b90SJames Wright   PetscCallCeed(ceed, CeedElemRestrictionDestroy(&honee->elem_restr_q));
275e3663b90SJames Wright   PetscCallCeed(ceed, CeedElemRestrictionDestroy(&honee->elem_restr_x));
276149fb536SJames Wright 
277149fb536SJames Wright   // Destroy QFunction contexts after using
278149fb536SJames Wright   // ToDo: Simplify tracked libCEED objects, smaller struct
279149fb536SJames Wright   {
280e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_inflow.qfctx));
281e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_inflow_jacobian.qfctx));
282e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_outflow.qfctx));
283e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_outflow_jacobian.qfctx));
284e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_freestream.qfctx));
285e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_freestream_jacobian.qfctx));
286e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_slip.qfctx));
287e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_slip_jacobian.qfctx));
288e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->ics.qfctx));
289e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfctx));
290e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfctx));
291e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfctx));
292149fb536SJames Wright   }
293149fb536SJames Wright 
294149fb536SJames Wright   // -- Operators
295e3663b90SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_ics_ctx));
2960c373b74SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_rhs_ctx));
2970c373b74SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_strong_bc_ctx));
2980c373b74SJames Wright   PetscCallCeed(ceed, CeedOperatorDestroy(&honee->op_ifunction));
299149fb536SJames Wright 
300149fb536SJames Wright   // -- Ceed
301149fb536SJames Wright   PetscCheck(CeedDestroy(&ceed) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Destroying Ceed object failed");
302149fb536SJames Wright 
303149fb536SJames Wright   if (app_ctx->test_type != TESTTYPE_NONE) {
304149fb536SJames Wright     PetscInt num_options_left = 0;
305149fb536SJames Wright     PetscCall(PetscOptionsLeftGet(NULL, &num_options_left, NULL, NULL));
306149fb536SJames Wright     PetscCheck(num_options_left == 0, PETSC_COMM_WORLD, -1,
307149fb536SJames Wright                "There are unused options. This is not allowed. See error message for the unused options (or use -options_left directly)");
308149fb536SJames Wright   }
309149fb536SJames Wright 
310149fb536SJames Wright   // ---------------------------------------------------------------------------
311149fb536SJames Wright   // Clean up PETSc
312149fb536SJames Wright   // ---------------------------------------------------------------------------
313149fb536SJames Wright   // -- Vectors
314149fb536SJames Wright   PetscCall(VecDestroy(&Q));
3150c373b74SJames Wright   PetscCall(VecDestroy(&honee->Q_loc));
3160c373b74SJames Wright   PetscCall(VecDestroy(&honee->Q_dot_loc));
317149fb536SJames Wright 
3180c373b74SJames Wright   PetscCall(KSPDestroy(&honee->mass_ksp));
319149fb536SJames Wright 
320149fb536SJames Wright   // -- Matrices
3210c373b74SJames Wright   PetscCall(MatDestroy(&honee->interp_viz));
3220c373b74SJames Wright   PetscCall(MatDestroy(&honee->mat_ijacobian));
323149fb536SJames Wright 
324149fb536SJames Wright   // -- DM
325149fb536SJames Wright   PetscCall(DMDestroy(&dm));
3260c373b74SJames Wright   PetscCall(DMDestroy(&honee->dm_viz));
327149fb536SJames Wright 
328149fb536SJames Wright   // -- TS
329149fb536SJames Wright   PetscCall(TSDestroy(&ts));
330149fb536SJames Wright 
331149fb536SJames Wright   // -- Function list
332149fb536SJames Wright   PetscCall(PetscFunctionListDestroy(&app_ctx->problems));
333149fb536SJames Wright 
334149fb536SJames Wright   PetscCall(PetscFree(app_ctx->amat_type));
335149fb536SJames Wright   PetscCall(PetscFree(app_ctx->wall_forces.walls));
336a29281c9SJames Wright   PetscCall(PetscViewerDestroy(&app_ctx->wall_forces.viewer));
337a29281c9SJames Wright   PetscCall(PetscViewerDestroy(&app_ctx->turb_spanstats_viewer));
338149fb536SJames Wright 
339149fb536SJames Wright   // -- Structs
340149fb536SJames Wright   for (PetscInt i = 0; i < problem->num_bc_defs; i++) {
341149fb536SJames Wright     PetscCall(BCDefinitionDestroy(&problem->bc_defs[i]));
342149fb536SJames Wright   }
343149fb536SJames Wright   PetscCall(PetscFree(problem->bc_defs));
344149fb536SJames Wright   PetscCall(PetscFree(units));
3450c373b74SJames Wright   PetscCall(PetscFree(honee));
346149fb536SJames Wright   PetscCall(PetscFree(problem));
347149fb536SJames Wright   PetscCall(PetscFree(bc));
348149fb536SJames Wright   PetscCall(PetscFree(phys_ctx));
349149fb536SJames Wright   PetscCall(PetscFree(app_ctx));
350e3663b90SJames Wright   PetscCall(PetscFree(honee));
351149fb536SJames Wright   PetscCall(PetscFree(problem));
352149fb536SJames Wright 
353149fb536SJames Wright   return PetscFinalize();
354149fb536SJames Wright }
355