1493642f1SJames Wright // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2493642f1SJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3493642f1SJames Wright // 4493642f1SJames Wright // SPDX-License-Identifier: BSD-2-Clause 5493642f1SJames Wright // 6493642f1SJames Wright // This file is part of CEED: http://github.com/ceed 7493642f1SJames Wright 8493642f1SJames Wright /// @file 9493642f1SJames Wright /// Implementation of the Synthetic Turbulence Generation (STG) algorithm 10493642f1SJames Wright /// presented in Shur et al. 2014 11493642f1SJames Wright 122b916ea7SJeremy L Thompson #include "stg_shur14.h" 132b916ea7SJeremy L Thompson 14493642f1SJames Wright #include <math.h> 15493642f1SJames Wright #include <petsc.h> 162b916ea7SJeremy L Thompson #include <stdlib.h> 172b916ea7SJeremy L Thompson 18493642f1SJames Wright #include "../navierstokes.h" 19493642f1SJames Wright #include "../qfunctions/stg_shur14.h" 20493642f1SJames Wright 218085925cSJames Wright STGShur14Context global_stg_ctx; 228085925cSJames Wright 23493642f1SJames Wright /* 24493642f1SJames Wright * @brief Perform Cholesky decomposition on array of symmetric 3x3 matrices 25493642f1SJames Wright * 26*04e40bb6SJeremy L Thompson * This assumes the input matrices are in order [11,22,33,12,13,23]. 27*04e40bb6SJeremy L Thompson * This format is also used for the output. 28493642f1SJames Wright * 29493642f1SJames Wright * @param[in] comm MPI_Comm 30493642f1SJames Wright * @param[in] nprofs Number of matrices in Rij 31493642f1SJames Wright * @param[in] Rij Array of the symmetric matrices [6,nprofs] 32493642f1SJames Wright * @param[out] Cij Array of the Cholesky Decomposition matrices, [6,nprofs] 33493642f1SJames Wright */ 342b916ea7SJeremy L Thompson PetscErrorCode CalcCholeskyDecomp(MPI_Comm comm, PetscInt nprofs, const CeedScalar Rij[6][nprofs], CeedScalar Cij[6][nprofs]) { 35493642f1SJames Wright PetscFunctionBeginUser; 36493642f1SJames Wright for (PetscInt i = 0; i < nprofs; i++) { 37493642f1SJames Wright Cij[0][i] = sqrt(Rij[0][i]); 38493642f1SJames Wright Cij[3][i] = Rij[3][i] / Cij[0][i]; 39493642f1SJames Wright Cij[1][i] = sqrt(Rij[1][i] - pow(Cij[3][i], 2)); 40493642f1SJames Wright Cij[4][i] = Rij[4][i] / Cij[0][i]; 41493642f1SJames Wright Cij[5][i] = (Rij[5][i] - Cij[3][i] * Cij[4][i]) / Cij[1][i]; 42493642f1SJames Wright Cij[2][i] = sqrt(Rij[2][i] - pow(Cij[4][i], 2) - pow(Cij[5][i], 2)); 43493642f1SJames Wright 442b916ea7SJeremy L Thompson if (isnan(Cij[0][i]) || isnan(Cij[1][i]) || isnan(Cij[2][i])) { 452b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Cholesky decomposition failed at profile point %" PetscInt_FMT ". Either STGInflow has non-SPD matrix or contains nan.", 462b916ea7SJeremy L Thompson i + 1); 472b916ea7SJeremy L Thompson } 48493642f1SJames Wright } 49493642f1SJames Wright PetscFunctionReturn(0); 50493642f1SJames Wright } 51493642f1SJames Wright 52493642f1SJames Wright /* 53493642f1SJames Wright * @brief Open a PHASTA *.dat file, grabbing dimensions and file pointer 54493642f1SJames Wright * 55*04e40bb6SJeremy L Thompson * This function opens the file specified by `path` using `PetscFOpen` and passes the file pointer in `fp`. 56*04e40bb6SJeremy L Thompson * It is not closed in this function, thus `fp` must be closed sometime after this function has been called (using `PetscFClose` for example). 57493642f1SJames Wright * 58*04e40bb6SJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 59493642f1SJames Wright * 60493642f1SJames Wright * @param[in] comm MPI_Comm for the program 61493642f1SJames Wright * @param[in] path Path to the file 62493642f1SJames Wright * @param[in] char_array_len Length of the character array that should contain each line 63493642f1SJames Wright * @param[out] dims Dimensions of the file, taken from the first line of the file 64493642f1SJames Wright * @param[out] fp File pointer to the opened file 65493642f1SJames Wright */ 662b916ea7SJeremy L Thompson static PetscErrorCode OpenPHASTADatFile(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 672b916ea7SJeremy L Thompson FILE **fp) { 68493642f1SJames Wright PetscInt ndims; 69493642f1SJames Wright char line[char_array_len]; 70493642f1SJames Wright char **array; 71493642f1SJames Wright 72493642f1SJames Wright PetscFunctionBeginUser; 7334b5deb1SJames Wright PetscCall(PetscFOpen(comm, path, "r", fp)); 7434b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, *fp, char_array_len, line)); 7534b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 762b916ea7SJeremy L Thompson if (ndims != 2) { 772b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Found %" PetscInt_FMT " dimensions instead of 2 on the first line of %s", ndims, path); 782b916ea7SJeremy L Thompson } 79493642f1SJames Wright 80493642f1SJames Wright for (PetscInt i = 0; i < ndims; i++) dims[i] = atoi(array[i]); 8134b5deb1SJames Wright PetscCall(PetscStrToArrayDestroy(ndims, array)); 822b916ea7SJeremy L Thompson 83493642f1SJames Wright PetscFunctionReturn(0); 84493642f1SJames Wright } 85493642f1SJames Wright 86493642f1SJames Wright /* 87*04e40bb6SJeremy L Thompson * @brief Get the number of rows for the PHASTA file at path. 88493642f1SJames Wright * 89*04e40bb6SJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 90493642f1SJames Wright * 91493642f1SJames Wright * @param[in] comm MPI_Comm for the program 92493642f1SJames Wright * @param[in] path Path to the file 93493642f1SJames Wright * @param[out] nrows Number of rows 94493642f1SJames Wright */ 952b916ea7SJeremy L Thompson static PetscErrorCode GetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows) { 96493642f1SJames Wright const PetscInt char_array_len = 512; 97493642f1SJames Wright PetscInt dims[2]; 98493642f1SJames Wright FILE *fp; 99493642f1SJames Wright 100493642f1SJames Wright PetscFunctionBeginUser; 10134b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 102493642f1SJames Wright *nrows = dims[0]; 10334b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 1042b916ea7SJeremy L Thompson 105493642f1SJames Wright PetscFunctionReturn(0); 106493642f1SJames Wright } 107493642f1SJames Wright 108493642f1SJames Wright /* 109493642f1SJames Wright * @brief Read the STGInflow file and load the contents into stg_ctx 110493642f1SJames Wright * 111*04e40bb6SJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 112*04e40bb6SJeremy L Thompson * Assumes there are 14 columns in the file. 113493642f1SJames Wright * 114*04e40bb6SJeremy L Thompson * Function calculates the Cholesky decomposition from the Reynolds stress profile found in the file. 115493642f1SJames Wright * 116493642f1SJames Wright * @param[in] comm MPI_Comm for the program 117493642f1SJames Wright * @param[in] path Path to the STGInflow.dat file 118*04e40bb6SJeremy L Thompson * @param[in,out] stg_ctx STGShur14Context where the data will be loaded into 119493642f1SJames Wright */ 1202b916ea7SJeremy L Thompson static PetscErrorCode ReadSTGInflow(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 121493642f1SJames Wright PetscInt ndims, dims[2]; 122493642f1SJames Wright FILE *fp; 123493642f1SJames Wright const PetscInt char_array_len = 512; 124493642f1SJames Wright char line[char_array_len]; 125493642f1SJames Wright char **array; 126493642f1SJames Wright 127493642f1SJames Wright PetscFunctionBeginUser; 128493642f1SJames Wright 12934b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 130493642f1SJames Wright 131493642f1SJames Wright CeedScalar rij[6][stg_ctx->nprofs]; 132c77f3192SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 133493642f1SJames Wright CeedScalar *eps = &stg_ctx->data[stg_ctx->offsets.eps]; 134493642f1SJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 1352b916ea7SJeremy L Thompson CeedScalar(*ubar)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.ubar]; 136493642f1SJames Wright 137493642f1SJames Wright for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 13834b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 13934b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 1402b916ea7SJeremy L Thompson if (ndims < dims[1]) { 1412b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 1422b916ea7SJeremy L Thompson ndims, dims[1]); 1432b916ea7SJeremy L Thompson } 144493642f1SJames Wright 145c77f3192SJames Wright wall_dist[i] = (CeedScalar)atof(array[0]); 146493642f1SJames Wright ubar[0][i] = (CeedScalar)atof(array[1]); 147493642f1SJames Wright ubar[1][i] = (CeedScalar)atof(array[2]); 148493642f1SJames Wright ubar[2][i] = (CeedScalar)atof(array[3]); 149493642f1SJames Wright rij[0][i] = (CeedScalar)atof(array[4]); 150493642f1SJames Wright rij[1][i] = (CeedScalar)atof(array[5]); 151493642f1SJames Wright rij[2][i] = (CeedScalar)atof(array[6]); 152493642f1SJames Wright rij[3][i] = (CeedScalar)atof(array[7]); 153493642f1SJames Wright rij[4][i] = (CeedScalar)atof(array[8]); 154493642f1SJames Wright rij[5][i] = (CeedScalar)atof(array[9]); 155493642f1SJames Wright lt[i] = (CeedScalar)atof(array[12]); 156493642f1SJames Wright eps[i] = (CeedScalar)atof(array[13]); 157493642f1SJames Wright 1582b916ea7SJeremy L Thompson if (wall_dist[i] < 0) SETERRQ(comm, -1, "Distance to wall in %s cannot be negative", path); 1592b916ea7SJeremy L Thompson if (lt[i] < 0) SETERRQ(comm, -1, "Turbulent length scale in %s cannot be negative", path); 1602b916ea7SJeremy L Thompson if (eps[i] < 0) SETERRQ(comm, -1, "Turbulent dissipation in %s cannot be negative", path); 161493642f1SJames Wright } 1622b916ea7SJeremy L Thompson CeedScalar(*cij)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.cij]; 16334b5deb1SJames Wright PetscCall(CalcCholeskyDecomp(comm, stg_ctx->nprofs, rij, cij)); 16434b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 1652b916ea7SJeremy L Thompson 166493642f1SJames Wright PetscFunctionReturn(0); 167493642f1SJames Wright } 168493642f1SJames Wright 169493642f1SJames Wright /* 170493642f1SJames Wright * @brief Read the STGRand file and load the contents into stg_ctx 171493642f1SJames Wright * 172*04e40bb6SJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 173*04e40bb6SJeremy L Thompson * Assumes there are 7 columns in the file. 174493642f1SJames Wright * 175493642f1SJames Wright * @param[in] comm MPI_Comm for the program 176493642f1SJames Wright * @param[in] path Path to the STGRand.dat file 177*04e40bb6SJeremy L Thompson * @param[in,out] stg_ctx STGShur14Context where the data will be loaded into 178493642f1SJames Wright */ 1792b916ea7SJeremy L Thompson static PetscErrorCode ReadSTGRand(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 180493642f1SJames Wright PetscInt ndims, dims[2]; 181493642f1SJames Wright FILE *fp; 182493642f1SJames Wright const PetscInt char_array_len = 512; 183493642f1SJames Wright char line[char_array_len]; 184493642f1SJames Wright char **array; 185493642f1SJames Wright 186493642f1SJames Wright PetscFunctionBeginUser; 18734b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 188493642f1SJames Wright 189493642f1SJames Wright CeedScalar *phi = &stg_ctx->data[stg_ctx->offsets.phi]; 1902b916ea7SJeremy L Thompson CeedScalar(*d)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.d]; 1912b916ea7SJeremy L Thompson CeedScalar(*sigma)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.sigma]; 192493642f1SJames Wright 193493642f1SJames Wright for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { 19434b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 19534b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 1962b916ea7SJeremy L Thompson if (ndims < dims[1]) { 1972b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 1982b916ea7SJeremy L Thompson ndims, dims[1]); 1992b916ea7SJeremy L Thompson } 200493642f1SJames Wright 201493642f1SJames Wright d[0][i] = (CeedScalar)atof(array[0]); 202493642f1SJames Wright d[1][i] = (CeedScalar)atof(array[1]); 203493642f1SJames Wright d[2][i] = (CeedScalar)atof(array[2]); 204493642f1SJames Wright phi[i] = (CeedScalar)atof(array[3]); 205493642f1SJames Wright sigma[0][i] = (CeedScalar)atof(array[4]); 206493642f1SJames Wright sigma[1][i] = (CeedScalar)atof(array[5]); 207493642f1SJames Wright sigma[2][i] = (CeedScalar)atof(array[6]); 208493642f1SJames Wright } 20934b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 2102b916ea7SJeremy L Thompson 211493642f1SJames Wright PetscFunctionReturn(0); 212493642f1SJames Wright } 213493642f1SJames Wright 214493642f1SJames Wright /* 215493642f1SJames Wright * @brief Read STG data from input paths and put in STGShur14Context 216493642f1SJames Wright * 217493642f1SJames Wright * Reads data from input paths and puts them into a STGShur14Context object. 218*04e40bb6SJeremy L Thompson * Data stored initially in `*pstg_ctx` will be copied over to the new STGShur14Context instance. 219493642f1SJames Wright * 220493642f1SJames Wright * @param[in] comm MPI_Comm for the program 221493642f1SJames Wright * @param[in] dm DM for the program 222493642f1SJames Wright * @param[in] stg_inflow_path Path to STGInflow.dat file 223493642f1SJames Wright * @param[in] stg_rand_path Path to STGRand.dat file 224*04e40bb6SJeremy L Thompson * @param[in,out] pstg_ctx Pointer to STGShur14Context where the data will be loaded into 225493642f1SJames Wright */ 2262b916ea7SJeremy L Thompson PetscErrorCode GetSTGContextData(const MPI_Comm comm, const DM dm, char stg_inflow_path[PETSC_MAX_PATH_LEN], char stg_rand_path[PETSC_MAX_PATH_LEN], 2272b916ea7SJeremy L Thompson STGShur14Context *pstg_ctx, const CeedScalar ynodes[]) { 228493642f1SJames Wright PetscInt nmodes, nprofs; 229493642f1SJames Wright STGShur14Context stg_ctx; 230493642f1SJames Wright PetscFunctionBeginUser; 231493642f1SJames Wright 232493642f1SJames Wright // Get options 23334b5deb1SJames Wright PetscCall(GetNRows(comm, stg_rand_path, &nmodes)); 23434b5deb1SJames Wright PetscCall(GetNRows(comm, stg_inflow_path, &nprofs)); 235493642f1SJames Wright if (nmodes > STG_NMODES_MAX) 2362b916ea7SJeremy L Thompson SETERRQ(comm, 1, 2372b916ea7SJeremy L Thompson "Number of wavemodes in %s (%" PetscInt_FMT ") exceeds STG_NMODES_MAX (%" PetscInt_FMT 2382b916ea7SJeremy L Thompson "). " 2392b916ea7SJeremy L Thompson "Change size of STG_NMODES_MAX and recompile", 2402b916ea7SJeremy L Thompson stg_rand_path, nmodes, STG_NMODES_MAX); 241493642f1SJames Wright 242493642f1SJames Wright { 243493642f1SJames Wright STGShur14Context s; 24434b5deb1SJames Wright PetscCall(PetscCalloc1(1, &s)); 245493642f1SJames Wright *s = **pstg_ctx; 246493642f1SJames Wright s->nmodes = nmodes; 247493642f1SJames Wright s->nprofs = nprofs; 248493642f1SJames Wright s->offsets.sigma = 0; 249493642f1SJames Wright s->offsets.d = nmodes * 3; 250493642f1SJames Wright s->offsets.phi = s->offsets.d + nmodes * 3; 251493642f1SJames Wright s->offsets.kappa = s->offsets.phi + nmodes; 252c77f3192SJames Wright s->offsets.wall_dist = s->offsets.kappa + nmodes; 253c77f3192SJames Wright s->offsets.ubar = s->offsets.wall_dist + nprofs; 254493642f1SJames Wright s->offsets.cij = s->offsets.ubar + nprofs * 3; 255493642f1SJames Wright s->offsets.eps = s->offsets.cij + nprofs * 6; 256493642f1SJames Wright s->offsets.lt = s->offsets.eps + nprofs; 257e6098bcdSJames Wright s->offsets.ynodes = s->offsets.lt + nprofs; 258e6098bcdSJames Wright PetscInt total_num_scalars = s->offsets.ynodes + s->nynodes; 259493642f1SJames Wright s->total_bytes = sizeof(*stg_ctx) + total_num_scalars * sizeof(stg_ctx->data[0]); 26034b5deb1SJames Wright PetscCall(PetscMalloc(s->total_bytes, &stg_ctx)); 261493642f1SJames Wright *stg_ctx = *s; 26234b5deb1SJames Wright PetscCall(PetscFree(s)); 263493642f1SJames Wright } 264493642f1SJames Wright 26534b5deb1SJames Wright PetscCall(ReadSTGInflow(comm, stg_inflow_path, stg_ctx)); 26634b5deb1SJames Wright PetscCall(ReadSTGRand(comm, stg_rand_path, stg_ctx)); 267493642f1SJames Wright 268e6098bcdSJames Wright if (stg_ctx->nynodes > 0) { 269e6098bcdSJames Wright CeedScalar *ynodes_ctx = &stg_ctx->data[stg_ctx->offsets.ynodes]; 270e6098bcdSJames Wright for (PetscInt i = 0; i < stg_ctx->nynodes; i++) ynodes_ctx[i] = ynodes[i]; 271e6098bcdSJames Wright } 272e6098bcdSJames Wright 273493642f1SJames Wright // -- Calculate kappa 274493642f1SJames Wright { 275493642f1SJames Wright CeedScalar *kappa = &stg_ctx->data[stg_ctx->offsets.kappa]; 276c77f3192SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 277493642f1SJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 278493642f1SJames Wright CeedScalar le, le_max = 0; 279493642f1SJames Wright 2802b916ea7SJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 281c77f3192SJames Wright le = PetscMin(2 * wall_dist[i], 3 * lt[i]); 282493642f1SJames Wright if (le_max < le) le_max = le; 283493642f1SJames Wright } 284493642f1SJames Wright CeedScalar kmin = M_PI / le_max; 285493642f1SJames Wright 2862b916ea7SJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { kappa[i] = kmin * pow(stg_ctx->alpha, i); } 287493642f1SJames Wright } // end calculate kappa 288493642f1SJames Wright 28934b5deb1SJames Wright PetscCall(PetscFree(*pstg_ctx)); 290493642f1SJames Wright *pstg_ctx = stg_ctx; 291493642f1SJames Wright PetscFunctionReturn(0); 292493642f1SJames Wright } 293493642f1SJames Wright 2942b916ea7SJeremy L Thompson PetscErrorCode SetupSTG(const MPI_Comm comm, const DM dm, ProblemData *problem, User user, const bool prescribe_T, const CeedScalar theta0, 2952b916ea7SJeremy L Thompson const CeedScalar P0, const CeedScalar ynodes[], const CeedInt nynodes) { 296493642f1SJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN] = "./STGInflow.dat"; 297493642f1SJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN] = "./STGRand.dat"; 2982b916ea7SJeremy L Thompson PetscBool mean_only = PETSC_FALSE, use_stgstrong = PETSC_FALSE, use_fluctuating_IC = PETSC_FALSE; 2992b916ea7SJeremy L Thompson CeedScalar u0 = 0.0, alpha = 1.01; 300493642f1SJames Wright CeedQFunctionContext stg_context; 301493642f1SJames Wright NewtonianIdealGasContext newtonian_ig_ctx; 302493642f1SJames Wright PetscFunctionBeginUser; 303493642f1SJames Wright 304493642f1SJames Wright // Get options 305493642f1SJames Wright PetscOptionsBegin(comm, NULL, "STG Boundary Condition Options", NULL); 3062b916ea7SJeremy L Thompson PetscCall(PetscOptionsString("-stg_inflow_path", "Path to STGInflow.dat", NULL, stg_inflow_path, stg_inflow_path, sizeof(stg_inflow_path), NULL)); 3072b916ea7SJeremy L Thompson PetscCall(PetscOptionsString("-stg_rand_path", "Path to STGInflow.dat", NULL, stg_rand_path, stg_rand_path, sizeof(stg_rand_path), NULL)); 3082b916ea7SJeremy L Thompson PetscCall(PetscOptionsReal("-stg_alpha", "Growth rate of the wavemodes", NULL, alpha, &alpha, NULL)); 3092b916ea7SJeremy L Thompson PetscCall(PetscOptionsReal("-stg_u0", "Advective velocity for the fluctuations", NULL, u0, &u0, NULL)); 3102b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_mean_only", "Only apply mean profile", NULL, mean_only, &mean_only, NULL)); 3112b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_strong", "Enforce STG inflow strongly", NULL, use_stgstrong, &use_stgstrong, NULL)); 3122b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_fluctuating_IC", "\"Extrude\" the fluctuations through the domain as an initial condition", NULL, 3132b916ea7SJeremy L Thompson use_fluctuating_IC, &use_fluctuating_IC, NULL)); 314493642f1SJames Wright PetscOptionsEnd(); 315493642f1SJames Wright 31634b5deb1SJames Wright PetscCall(PetscCalloc1(1, &global_stg_ctx)); 3178085925cSJames Wright global_stg_ctx->alpha = alpha; 3188085925cSJames Wright global_stg_ctx->u0 = u0; 3198085925cSJames Wright global_stg_ctx->is_implicit = user->phys->implicit; 3208085925cSJames Wright global_stg_ctx->prescribe_T = prescribe_T; 3218085925cSJames Wright global_stg_ctx->mean_only = mean_only; 322d4e0f297SJames Wright global_stg_ctx->use_fluctuating_IC = use_fluctuating_IC; 3238085925cSJames Wright global_stg_ctx->theta0 = theta0; 3248085925cSJames Wright global_stg_ctx->P0 = P0; 3258085925cSJames Wright global_stg_ctx->nynodes = nynodes; 326493642f1SJames Wright 327493642f1SJames Wright { 328493642f1SJames Wright // Calculate dx assuming constant spacing 329493642f1SJames Wright PetscReal domain_min[3], domain_max[3], domain_size[3]; 33034b5deb1SJames Wright PetscCall(DMGetBoundingBox(dm, domain_min, domain_max)); 331493642f1SJames Wright for (PetscInt i = 0; i < 3; i++) domain_size[i] = domain_max[i] - domain_min[i]; 332493642f1SJames Wright 333493642f1SJames Wright PetscInt nmax = 3, faces[3]; 3342b916ea7SJeremy L Thompson PetscCall(PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, &nmax, NULL)); 3358085925cSJames Wright global_stg_ctx->dx = domain_size[0] / faces[0]; 3368085925cSJames Wright global_stg_ctx->dz = domain_size[2] / faces[2]; 337493642f1SJames Wright } 338493642f1SJames Wright 3392b916ea7SJeremy L Thompson CeedQFunctionContextGetData(problem->apply_vol_rhs.qfunction_context, CEED_MEM_HOST, &newtonian_ig_ctx); 3408085925cSJames Wright global_stg_ctx->newtonian_ctx = *newtonian_ig_ctx; 3412b916ea7SJeremy L Thompson CeedQFunctionContextRestoreData(problem->apply_vol_rhs.qfunction_context, &newtonian_ig_ctx); 342493642f1SJames Wright 3432b916ea7SJeremy L Thompson PetscCall(GetSTGContextData(comm, dm, stg_inflow_path, stg_rand_path, &global_stg_ctx, ynodes)); 344493642f1SJames Wright 345493642f1SJames Wright CeedQFunctionContextCreate(user->ceed, &stg_context); 3462b916ea7SJeremy L Thompson CeedQFunctionContextSetData(stg_context, CEED_MEM_HOST, CEED_USE_POINTER, global_stg_ctx->total_bytes, global_stg_ctx); 3472b916ea7SJeremy L Thompson CeedQFunctionContextSetDataDestroy(stg_context, CEED_MEM_HOST, FreeContextPetsc); 3482b916ea7SJeremy L Thompson CeedQFunctionContextRegisterDouble(stg_context, "solution time", offsetof(struct STGShur14Context_, time), 1, "Physical time of the solution"); 349493642f1SJames Wright 35043bff553SJames Wright CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 35143bff553SJames Wright problem->ics.qfunction = ICsSTG; 35243bff553SJames Wright problem->ics.qfunction_loc = ICsSTG_loc; 35343bff553SJames Wright problem->ics.qfunction_context = stg_context; 35443bff553SJames Wright 355e6098bcdSJames Wright if (use_stgstrong) { 3568085925cSJames Wright // Use default boundary integral QF (BoundaryIntegral) in newtonian.h 3576d0190e2SJames Wright problem->use_dirichlet_ceed = PETSC_TRUE; 358d7244455SJames Wright problem->bc_from_ics = PETSC_FALSE; 359e6098bcdSJames Wright } else { 360493642f1SJames Wright problem->apply_inflow.qfunction = STGShur14_Inflow; 361493642f1SJames Wright problem->apply_inflow.qfunction_loc = STGShur14_Inflow_loc; 362a6e8f989SJames Wright problem->apply_inflow_jacobian.qfunction = STGShur14_Inflow_Jacobian; 363a6e8f989SJames Wright problem->apply_inflow_jacobian.qfunction_loc = STGShur14_Inflow_Jacobian_loc; 3642b916ea7SJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow.qfunction_context); 3652b916ea7SJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow_jacobian.qfunction_context); 366d7244455SJames Wright problem->bc_from_ics = PETSC_TRUE; 367e6098bcdSJames Wright } 368493642f1SJames Wright 369493642f1SJames Wright PetscFunctionReturn(0); 370493642f1SJames Wright } 371e6098bcdSJames Wright 3722b916ea7SJeremy L Thompson static inline PetscScalar FindDy(const PetscScalar ynodes[], const PetscInt nynodes, const PetscScalar y) { 373e6098bcdSJames Wright const PetscScalar half_mindy = 0.5 * (ynodes[1] - ynodes[0]); 374e6098bcdSJames Wright // ^^assuming min(dy) is first element off the wall 375e6098bcdSJames Wright PetscInt idx = -1; // Index 376e6098bcdSJames Wright 377e6098bcdSJames Wright for (PetscInt i = 0; i < nynodes; i++) { 378e6098bcdSJames Wright if (y < ynodes[i] + half_mindy) { 3792b916ea7SJeremy L Thompson idx = i; 3802b916ea7SJeremy L Thompson break; 381e6098bcdSJames Wright } 382e6098bcdSJames Wright } 383e6098bcdSJames Wright if (idx == 0) return ynodes[1] - ynodes[0]; 384e6098bcdSJames Wright else if (idx == nynodes - 1) return ynodes[nynodes - 2] - ynodes[nynodes - 1]; 385e6098bcdSJames Wright else return 0.5 * (ynodes[idx + 1] - ynodes[idx - 1]); 386e6098bcdSJames Wright } 387e6098bcdSJames Wright 388e6098bcdSJames Wright // Function passed to DMAddBoundary 3896d0190e2SJames Wright // NOTE: Not used in favor of QFunction-based method 3902b916ea7SJeremy L Thompson PetscErrorCode StrongSTGbcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[], void *ctx) { 391e6098bcdSJames Wright PetscFunctionBeginUser; 3922b916ea7SJeremy L Thompson 393e6098bcdSJames Wright const STGShur14Context stg_ctx = (STGShur14Context)ctx; 394e6098bcdSJames Wright PetscScalar qn[stg_ctx->nmodes], u[3], ubar[3], cij[6], eps, lt; 395e6098bcdSJames Wright const bool mean_only = stg_ctx->mean_only; 396e6098bcdSJames Wright const PetscScalar dx = stg_ctx->dx; 397e6098bcdSJames Wright const PetscScalar dz = stg_ctx->dz; 398e6098bcdSJames Wright const PetscScalar mu = stg_ctx->newtonian_ctx.mu; 399e6098bcdSJames Wright const PetscScalar theta0 = stg_ctx->theta0; 400e6098bcdSJames Wright const PetscScalar P0 = stg_ctx->P0; 401e6098bcdSJames Wright const PetscScalar cv = stg_ctx->newtonian_ctx.cv; 402e6098bcdSJames Wright const PetscScalar cp = stg_ctx->newtonian_ctx.cp; 403e6098bcdSJames Wright const PetscScalar Rd = cp - cv; 404e6098bcdSJames Wright 405e6098bcdSJames Wright const CeedScalar rho = P0 / (Rd * theta0); 406e6098bcdSJames Wright InterpolateProfile(x[1], ubar, cij, &eps, <, stg_ctx); 407e6098bcdSJames Wright if (!mean_only) { 408e6098bcdSJames Wright const PetscInt nynodes = stg_ctx->nynodes; 409e6098bcdSJames Wright const PetscScalar *ynodes = &stg_ctx->data[stg_ctx->offsets.ynodes]; 410e6098bcdSJames Wright const PetscScalar h[3] = {dx, FindDy(ynodes, nynodes, x[1]), dz}; 411e6098bcdSJames Wright CalcSpectrum(x[1], eps, lt, h, mu / rho, qn, stg_ctx); 412e6098bcdSJames Wright STGShur14_Calc(x, time, ubar, cij, qn, u, stg_ctx); 413e6098bcdSJames Wright } else { 414e6098bcdSJames Wright for (CeedInt j = 0; j < 3; j++) u[j] = ubar[j]; 415e6098bcdSJames Wright } 416e6098bcdSJames Wright 417e6098bcdSJames Wright bcval[0] = rho; 418e6098bcdSJames Wright bcval[1] = rho * u[0]; 419e6098bcdSJames Wright bcval[2] = rho * u[1]; 420e6098bcdSJames Wright bcval[3] = rho * u[2]; 421e6098bcdSJames Wright PetscFunctionReturn(0); 422e6098bcdSJames Wright } 423e6098bcdSJames Wright 4242b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG(DM dm, SimpleBC bc, ProblemData *problem, Physics phys) { 425e6098bcdSJames Wright DMLabel label; 426e6098bcdSJames Wright PetscFunctionBeginUser; 427e6098bcdSJames Wright 428d374fb47SJames Wright PetscInt comps[5], num_comps = 4; 4293636f6a4SJames Wright switch (phys->state_var) { 4303636f6a4SJames Wright case STATEVAR_CONSERVATIVE: 431d374fb47SJames Wright // {0,1,2,3} for rho, rho*u, rho*v, rho*w 432d374fb47SJames Wright for (int i = 0; i < 4; i++) comps[i] = i; 4333636f6a4SJames Wright break; 4343636f6a4SJames Wright 4353636f6a4SJames Wright case STATEVAR_PRIMITIVE: 4363636f6a4SJames Wright // {1,2,3,4} for u, v, w, T 4373636f6a4SJames Wright for (int i = 0; i < 4; i++) comps[i] = i + 1; 4383636f6a4SJames Wright break; 439d374fb47SJames Wright } 440d374fb47SJames Wright 44134b5deb1SJames Wright PetscCall(DMGetLabel(dm, "Face Sets", &label)); 442e6098bcdSJames Wright // Set wall BCs 443e6098bcdSJames Wright if (bc->num_inflow > 0) { 4442b916ea7SJeremy L Thompson PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "STG", label, bc->num_inflow, bc->inflows, 0, num_comps, comps, (void (*)(void))StrongSTGbcFunc, 44534b5deb1SJames Wright NULL, global_stg_ctx, NULL)); 446e6098bcdSJames Wright } 447e6098bcdSJames Wright 448e6098bcdSJames Wright PetscFunctionReturn(0); 449e6098bcdSJames Wright } 4506d0190e2SJames Wright 4512b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG_QF(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt num_comp_q, CeedInt stg_data_size, 4529eeef72bSJames Wright CeedInt q_data_size_sur, CeedQFunction *pqf_strongbc) { 4536d0190e2SJames Wright CeedQFunction qf_strongbc; 4546d0190e2SJames Wright PetscFunctionBeginUser; 4552b916ea7SJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, STGShur14_Inflow_StrongQF, STGShur14_Inflow_StrongQF_loc, &qf_strongbc); 4562b916ea7SJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4576d0190e2SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4586d0190e2SJames Wright CeedQFunctionAddInput(qf_strongbc, "scale", 1, CEED_EVAL_NONE); 4599eeef72bSJames Wright CeedQFunctionAddInput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4606d0190e2SJames Wright CeedQFunctionAddOutput(qf_strongbc, "q", num_comp_q, CEED_EVAL_NONE); 4616d0190e2SJames Wright 4626d0190e2SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4636d0190e2SJames Wright *pqf_strongbc = qf_strongbc; 4646d0190e2SJames Wright PetscFunctionReturn(0); 4656d0190e2SJames Wright } 4669eeef72bSJames Wright 4672b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG_PreProcessing(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt stg_data_size, CeedInt q_data_size_sur, 4689eeef72bSJames Wright CeedQFunction *pqf_strongbc) { 4699eeef72bSJames Wright CeedQFunction qf_strongbc; 4709eeef72bSJames Wright PetscFunctionBeginUser; 4712b916ea7SJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, Preprocess_STGShur14, Preprocess_STGShur14_loc, &qf_strongbc); 4722b916ea7SJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4739eeef72bSJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4749eeef72bSJames Wright CeedQFunctionAddOutput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4759eeef72bSJames Wright 4769eeef72bSJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4779eeef72bSJames Wright *pqf_strongbc = qf_strongbc; 4789eeef72bSJames Wright PetscFunctionReturn(0); 4799eeef72bSJames Wright } 480