1493642f1SJames Wright // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2493642f1SJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3493642f1SJames Wright // 4493642f1SJames Wright // SPDX-License-Identifier: BSD-2-Clause 5493642f1SJames Wright // 6493642f1SJames Wright // This file is part of CEED: http://github.com/ceed 7493642f1SJames Wright 8493642f1SJames Wright /// @file 9493642f1SJames Wright /// Implementation of the Synthetic Turbulence Generation (STG) algorithm 10493642f1SJames Wright /// presented in Shur et al. 2014 11493642f1SJames Wright 12*2b916ea7SJeremy L Thompson #include "stg_shur14.h" 13*2b916ea7SJeremy L Thompson 14493642f1SJames Wright #include <math.h> 15493642f1SJames Wright #include <petsc.h> 16*2b916ea7SJeremy L Thompson #include <stdlib.h> 17*2b916ea7SJeremy L Thompson 18493642f1SJames Wright #include "../navierstokes.h" 19493642f1SJames Wright #include "../qfunctions/stg_shur14.h" 20493642f1SJames Wright 218085925cSJames Wright STGShur14Context global_stg_ctx; 228085925cSJames Wright 23493642f1SJames Wright /* 24493642f1SJames Wright * @brief Perform Cholesky decomposition on array of symmetric 3x3 matrices 25493642f1SJames Wright * 26493642f1SJames Wright * This assumes the input matrices are in order [11,22,33,12,13,23]. This 27493642f1SJames Wright * format is also used for the output. 28493642f1SJames Wright * 29493642f1SJames Wright * @param[in] comm MPI_Comm 30493642f1SJames Wright * @param[in] nprofs Number of matrices in Rij 31493642f1SJames Wright * @param[in] Rij Array of the symmetric matrices [6,nprofs] 32493642f1SJames Wright * @param[out] Cij Array of the Cholesky Decomposition matrices, [6,nprofs] 33493642f1SJames Wright */ 34*2b916ea7SJeremy L Thompson PetscErrorCode CalcCholeskyDecomp(MPI_Comm comm, PetscInt nprofs, const CeedScalar Rij[6][nprofs], CeedScalar Cij[6][nprofs]) { 35493642f1SJames Wright PetscFunctionBeginUser; 36493642f1SJames Wright for (PetscInt i = 0; i < nprofs; i++) { 37493642f1SJames Wright Cij[0][i] = sqrt(Rij[0][i]); 38493642f1SJames Wright Cij[3][i] = Rij[3][i] / Cij[0][i]; 39493642f1SJames Wright Cij[1][i] = sqrt(Rij[1][i] - pow(Cij[3][i], 2)); 40493642f1SJames Wright Cij[4][i] = Rij[4][i] / Cij[0][i]; 41493642f1SJames Wright Cij[5][i] = (Rij[5][i] - Cij[3][i] * Cij[4][i]) / Cij[1][i]; 42493642f1SJames Wright Cij[2][i] = sqrt(Rij[2][i] - pow(Cij[4][i], 2) - pow(Cij[5][i], 2)); 43493642f1SJames Wright 44*2b916ea7SJeremy L Thompson if (isnan(Cij[0][i]) || isnan(Cij[1][i]) || isnan(Cij[2][i])) { 45*2b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Cholesky decomposition failed at profile point %" PetscInt_FMT ". Either STGInflow has non-SPD matrix or contains nan.", 46*2b916ea7SJeremy L Thompson i + 1); 47*2b916ea7SJeremy L Thompson } 48493642f1SJames Wright } 49493642f1SJames Wright PetscFunctionReturn(0); 50493642f1SJames Wright } 51493642f1SJames Wright 52493642f1SJames Wright /* 53493642f1SJames Wright * @brief Open a PHASTA *.dat file, grabbing dimensions and file pointer 54493642f1SJames Wright * 55493642f1SJames Wright * This function opens the file specified by `path` using `PetscFOpen` and 56493642f1SJames Wright * passes the file pointer in `fp`. It is not closed in this function, thus 57493642f1SJames Wright * `fp` must be closed sometime after this function has been called (using 58493642f1SJames Wright * `PetscFClose` for example). 59493642f1SJames Wright * 60493642f1SJames Wright * Assumes that the first line of the file has the number of rows and columns 61493642f1SJames Wright * as the only two entries, separated by a single space 62493642f1SJames Wright * 63493642f1SJames Wright * @param[in] comm MPI_Comm for the program 64493642f1SJames Wright * @param[in] path Path to the file 65493642f1SJames Wright * @param[in] char_array_len Length of the character array that should contain each line 66493642f1SJames Wright * @param[out] dims Dimensions of the file, taken from the first line of the file 67493642f1SJames Wright * @param[out] fp File pointer to the opened file 68493642f1SJames Wright */ 69*2b916ea7SJeremy L Thompson static PetscErrorCode OpenPHASTADatFile(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 70*2b916ea7SJeremy L Thompson FILE **fp) { 71493642f1SJames Wright PetscInt ndims; 72493642f1SJames Wright char line[char_array_len]; 73493642f1SJames Wright char **array; 74493642f1SJames Wright 75493642f1SJames Wright PetscFunctionBeginUser; 7634b5deb1SJames Wright PetscCall(PetscFOpen(comm, path, "r", fp)); 7734b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, *fp, char_array_len, line)); 7834b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 79*2b916ea7SJeremy L Thompson if (ndims != 2) { 80*2b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Found %" PetscInt_FMT " dimensions instead of 2 on the first line of %s", ndims, path); 81*2b916ea7SJeremy L Thompson } 82493642f1SJames Wright 83493642f1SJames Wright for (PetscInt i = 0; i < ndims; i++) dims[i] = atoi(array[i]); 8434b5deb1SJames Wright PetscCall(PetscStrToArrayDestroy(ndims, array)); 85*2b916ea7SJeremy L Thompson 86493642f1SJames Wright PetscFunctionReturn(0); 87493642f1SJames Wright } 88493642f1SJames Wright 89493642f1SJames Wright /* 90493642f1SJames Wright * @brief Get the number of rows for the PHASTA file at path 91493642f1SJames Wright * 92493642f1SJames Wright * Assumes that the first line of the file has the number of rows and columns 93493642f1SJames Wright * as the only two entries, separated by a single space 94493642f1SJames Wright * 95493642f1SJames Wright * @param[in] comm MPI_Comm for the program 96493642f1SJames Wright * @param[in] path Path to the file 97493642f1SJames Wright * @param[out] nrows Number of rows 98493642f1SJames Wright */ 99*2b916ea7SJeremy L Thompson static PetscErrorCode GetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows) { 100493642f1SJames Wright const PetscInt char_array_len = 512; 101493642f1SJames Wright PetscInt dims[2]; 102493642f1SJames Wright FILE *fp; 103493642f1SJames Wright 104493642f1SJames Wright PetscFunctionBeginUser; 10534b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 106493642f1SJames Wright *nrows = dims[0]; 10734b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 108*2b916ea7SJeremy L Thompson 109493642f1SJames Wright PetscFunctionReturn(0); 110493642f1SJames Wright } 111493642f1SJames Wright 112493642f1SJames Wright /* 113493642f1SJames Wright * @brief Read the STGInflow file and load the contents into stg_ctx 114493642f1SJames Wright * 115493642f1SJames Wright * Assumes that the first line of the file has the number of rows and columns 116493642f1SJames Wright * as the only two entries, separated by a single space. 117493642f1SJames Wright * Assumes there are 14 columns in the file 118493642f1SJames Wright * 119493642f1SJames Wright * Function calculates the Cholesky decomposition from the Reynolds stress 120493642f1SJames Wright * profile found in the file 121493642f1SJames Wright * 122493642f1SJames Wright * @param[in] comm MPI_Comm for the program 123493642f1SJames Wright * @param[in] path Path to the STGInflow.dat file 124493642f1SJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 125493642f1SJames Wright */ 126*2b916ea7SJeremy L Thompson static PetscErrorCode ReadSTGInflow(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 127493642f1SJames Wright PetscInt ndims, dims[2]; 128493642f1SJames Wright FILE *fp; 129493642f1SJames Wright const PetscInt char_array_len = 512; 130493642f1SJames Wright char line[char_array_len]; 131493642f1SJames Wright char **array; 132493642f1SJames Wright 133493642f1SJames Wright PetscFunctionBeginUser; 134493642f1SJames Wright 13534b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 136493642f1SJames Wright 137493642f1SJames Wright CeedScalar rij[6][stg_ctx->nprofs]; 138c77f3192SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 139493642f1SJames Wright CeedScalar *eps = &stg_ctx->data[stg_ctx->offsets.eps]; 140493642f1SJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 141*2b916ea7SJeremy L Thompson CeedScalar(*ubar)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.ubar]; 142493642f1SJames Wright 143493642f1SJames Wright for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 14434b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 14534b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 146*2b916ea7SJeremy L Thompson if (ndims < dims[1]) { 147*2b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 148*2b916ea7SJeremy L Thompson ndims, dims[1]); 149*2b916ea7SJeremy L Thompson } 150493642f1SJames Wright 151c77f3192SJames Wright wall_dist[i] = (CeedScalar)atof(array[0]); 152493642f1SJames Wright ubar[0][i] = (CeedScalar)atof(array[1]); 153493642f1SJames Wright ubar[1][i] = (CeedScalar)atof(array[2]); 154493642f1SJames Wright ubar[2][i] = (CeedScalar)atof(array[3]); 155493642f1SJames Wright rij[0][i] = (CeedScalar)atof(array[4]); 156493642f1SJames Wright rij[1][i] = (CeedScalar)atof(array[5]); 157493642f1SJames Wright rij[2][i] = (CeedScalar)atof(array[6]); 158493642f1SJames Wright rij[3][i] = (CeedScalar)atof(array[7]); 159493642f1SJames Wright rij[4][i] = (CeedScalar)atof(array[8]); 160493642f1SJames Wright rij[5][i] = (CeedScalar)atof(array[9]); 161493642f1SJames Wright lt[i] = (CeedScalar)atof(array[12]); 162493642f1SJames Wright eps[i] = (CeedScalar)atof(array[13]); 163493642f1SJames Wright 164*2b916ea7SJeremy L Thompson if (wall_dist[i] < 0) SETERRQ(comm, -1, "Distance to wall in %s cannot be negative", path); 165*2b916ea7SJeremy L Thompson if (lt[i] < 0) SETERRQ(comm, -1, "Turbulent length scale in %s cannot be negative", path); 166*2b916ea7SJeremy L Thompson if (eps[i] < 0) SETERRQ(comm, -1, "Turbulent dissipation in %s cannot be negative", path); 167493642f1SJames Wright } 168*2b916ea7SJeremy L Thompson CeedScalar(*cij)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.cij]; 16934b5deb1SJames Wright PetscCall(CalcCholeskyDecomp(comm, stg_ctx->nprofs, rij, cij)); 17034b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 171*2b916ea7SJeremy L Thompson 172493642f1SJames Wright PetscFunctionReturn(0); 173493642f1SJames Wright } 174493642f1SJames Wright 175493642f1SJames Wright /* 176493642f1SJames Wright * @brief Read the STGRand file and load the contents into stg_ctx 177493642f1SJames Wright * 178493642f1SJames Wright * Assumes that the first line of the file has the number of rows and columns 179493642f1SJames Wright * as the only two entries, separated by a single space. 180493642f1SJames Wright * Assumes there are 7 columns in the file 181493642f1SJames Wright * 182493642f1SJames Wright * @param[in] comm MPI_Comm for the program 183493642f1SJames Wright * @param[in] path Path to the STGRand.dat file 184493642f1SJames Wright * @param[inout] stg_ctx STGShur14Context where the data will be loaded into 185493642f1SJames Wright */ 186*2b916ea7SJeremy L Thompson static PetscErrorCode ReadSTGRand(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 187493642f1SJames Wright PetscInt ndims, dims[2]; 188493642f1SJames Wright FILE *fp; 189493642f1SJames Wright const PetscInt char_array_len = 512; 190493642f1SJames Wright char line[char_array_len]; 191493642f1SJames Wright char **array; 192493642f1SJames Wright 193493642f1SJames Wright PetscFunctionBeginUser; 19434b5deb1SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 195493642f1SJames Wright 196493642f1SJames Wright CeedScalar *phi = &stg_ctx->data[stg_ctx->offsets.phi]; 197*2b916ea7SJeremy L Thompson CeedScalar(*d)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.d]; 198*2b916ea7SJeremy L Thompson CeedScalar(*sigma)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.sigma]; 199493642f1SJames Wright 200493642f1SJames Wright for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { 20134b5deb1SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 20234b5deb1SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 203*2b916ea7SJeremy L Thompson if (ndims < dims[1]) { 204*2b916ea7SJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 205*2b916ea7SJeremy L Thompson ndims, dims[1]); 206*2b916ea7SJeremy L Thompson } 207493642f1SJames Wright 208493642f1SJames Wright d[0][i] = (CeedScalar)atof(array[0]); 209493642f1SJames Wright d[1][i] = (CeedScalar)atof(array[1]); 210493642f1SJames Wright d[2][i] = (CeedScalar)atof(array[2]); 211493642f1SJames Wright phi[i] = (CeedScalar)atof(array[3]); 212493642f1SJames Wright sigma[0][i] = (CeedScalar)atof(array[4]); 213493642f1SJames Wright sigma[1][i] = (CeedScalar)atof(array[5]); 214493642f1SJames Wright sigma[2][i] = (CeedScalar)atof(array[6]); 215493642f1SJames Wright } 21634b5deb1SJames Wright PetscCall(PetscFClose(comm, fp)); 217*2b916ea7SJeremy L Thompson 218493642f1SJames Wright PetscFunctionReturn(0); 219493642f1SJames Wright } 220493642f1SJames Wright 221493642f1SJames Wright /* 222493642f1SJames Wright * @brief Read STG data from input paths and put in STGShur14Context 223493642f1SJames Wright * 224493642f1SJames Wright * Reads data from input paths and puts them into a STGShur14Context object. 225493642f1SJames Wright * Data stored initially in `*pstg_ctx` will be copied over to the new 226493642f1SJames Wright * STGShur14Context instance. 227493642f1SJames Wright * 228493642f1SJames Wright * @param[in] comm MPI_Comm for the program 229493642f1SJames Wright * @param[in] dm DM for the program 230493642f1SJames Wright * @param[in] stg_inflow_path Path to STGInflow.dat file 231493642f1SJames Wright * @param[in] stg_rand_path Path to STGRand.dat file 232493642f1SJames Wright * @param[inout] pstg_ctx Pointer to STGShur14Context where the data will be loaded into 233493642f1SJames Wright */ 234*2b916ea7SJeremy L Thompson PetscErrorCode GetSTGContextData(const MPI_Comm comm, const DM dm, char stg_inflow_path[PETSC_MAX_PATH_LEN], char stg_rand_path[PETSC_MAX_PATH_LEN], 235*2b916ea7SJeremy L Thompson STGShur14Context *pstg_ctx, const CeedScalar ynodes[]) { 236493642f1SJames Wright PetscInt nmodes, nprofs; 237493642f1SJames Wright STGShur14Context stg_ctx; 238493642f1SJames Wright PetscFunctionBeginUser; 239493642f1SJames Wright 240493642f1SJames Wright // Get options 24134b5deb1SJames Wright PetscCall(GetNRows(comm, stg_rand_path, &nmodes)); 24234b5deb1SJames Wright PetscCall(GetNRows(comm, stg_inflow_path, &nprofs)); 243493642f1SJames Wright if (nmodes > STG_NMODES_MAX) 244*2b916ea7SJeremy L Thompson SETERRQ(comm, 1, 245*2b916ea7SJeremy L Thompson "Number of wavemodes in %s (%" PetscInt_FMT ") exceeds STG_NMODES_MAX (%" PetscInt_FMT 246*2b916ea7SJeremy L Thompson "). " 247*2b916ea7SJeremy L Thompson "Change size of STG_NMODES_MAX and recompile", 248*2b916ea7SJeremy L Thompson stg_rand_path, nmodes, STG_NMODES_MAX); 249493642f1SJames Wright 250493642f1SJames Wright { 251493642f1SJames Wright STGShur14Context s; 25234b5deb1SJames Wright PetscCall(PetscCalloc1(1, &s)); 253493642f1SJames Wright *s = **pstg_ctx; 254493642f1SJames Wright s->nmodes = nmodes; 255493642f1SJames Wright s->nprofs = nprofs; 256493642f1SJames Wright s->offsets.sigma = 0; 257493642f1SJames Wright s->offsets.d = nmodes * 3; 258493642f1SJames Wright s->offsets.phi = s->offsets.d + nmodes * 3; 259493642f1SJames Wright s->offsets.kappa = s->offsets.phi + nmodes; 260c77f3192SJames Wright s->offsets.wall_dist = s->offsets.kappa + nmodes; 261c77f3192SJames Wright s->offsets.ubar = s->offsets.wall_dist + nprofs; 262493642f1SJames Wright s->offsets.cij = s->offsets.ubar + nprofs * 3; 263493642f1SJames Wright s->offsets.eps = s->offsets.cij + nprofs * 6; 264493642f1SJames Wright s->offsets.lt = s->offsets.eps + nprofs; 265e6098bcdSJames Wright s->offsets.ynodes = s->offsets.lt + nprofs; 266e6098bcdSJames Wright PetscInt total_num_scalars = s->offsets.ynodes + s->nynodes; 267493642f1SJames Wright s->total_bytes = sizeof(*stg_ctx) + total_num_scalars * sizeof(stg_ctx->data[0]); 26834b5deb1SJames Wright PetscCall(PetscMalloc(s->total_bytes, &stg_ctx)); 269493642f1SJames Wright *stg_ctx = *s; 27034b5deb1SJames Wright PetscCall(PetscFree(s)); 271493642f1SJames Wright } 272493642f1SJames Wright 27334b5deb1SJames Wright PetscCall(ReadSTGInflow(comm, stg_inflow_path, stg_ctx)); 27434b5deb1SJames Wright PetscCall(ReadSTGRand(comm, stg_rand_path, stg_ctx)); 275493642f1SJames Wright 276e6098bcdSJames Wright if (stg_ctx->nynodes > 0) { 277e6098bcdSJames Wright CeedScalar *ynodes_ctx = &stg_ctx->data[stg_ctx->offsets.ynodes]; 278e6098bcdSJames Wright for (PetscInt i = 0; i < stg_ctx->nynodes; i++) ynodes_ctx[i] = ynodes[i]; 279e6098bcdSJames Wright } 280e6098bcdSJames Wright 281493642f1SJames Wright // -- Calculate kappa 282493642f1SJames Wright { 283493642f1SJames Wright CeedScalar *kappa = &stg_ctx->data[stg_ctx->offsets.kappa]; 284c77f3192SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 285493642f1SJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 286493642f1SJames Wright CeedScalar le, le_max = 0; 287493642f1SJames Wright 288*2b916ea7SJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 289c77f3192SJames Wright le = PetscMin(2 * wall_dist[i], 3 * lt[i]); 290493642f1SJames Wright if (le_max < le) le_max = le; 291493642f1SJames Wright } 292493642f1SJames Wright CeedScalar kmin = M_PI / le_max; 293493642f1SJames Wright 294*2b916ea7SJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { kappa[i] = kmin * pow(stg_ctx->alpha, i); } 295493642f1SJames Wright } // end calculate kappa 296493642f1SJames Wright 29734b5deb1SJames Wright PetscCall(PetscFree(*pstg_ctx)); 298493642f1SJames Wright *pstg_ctx = stg_ctx; 299493642f1SJames Wright PetscFunctionReturn(0); 300493642f1SJames Wright } 301493642f1SJames Wright 302*2b916ea7SJeremy L Thompson PetscErrorCode SetupSTG(const MPI_Comm comm, const DM dm, ProblemData *problem, User user, const bool prescribe_T, const CeedScalar theta0, 303*2b916ea7SJeremy L Thompson const CeedScalar P0, const CeedScalar ynodes[], const CeedInt nynodes) { 304493642f1SJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN] = "./STGInflow.dat"; 305493642f1SJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN] = "./STGRand.dat"; 306*2b916ea7SJeremy L Thompson PetscBool mean_only = PETSC_FALSE, use_stgstrong = PETSC_FALSE, use_fluctuating_IC = PETSC_FALSE; 307*2b916ea7SJeremy L Thompson CeedScalar u0 = 0.0, alpha = 1.01; 308493642f1SJames Wright CeedQFunctionContext stg_context; 309493642f1SJames Wright NewtonianIdealGasContext newtonian_ig_ctx; 310493642f1SJames Wright PetscFunctionBeginUser; 311493642f1SJames Wright 312493642f1SJames Wright // Get options 313493642f1SJames Wright PetscOptionsBegin(comm, NULL, "STG Boundary Condition Options", NULL); 314*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsString("-stg_inflow_path", "Path to STGInflow.dat", NULL, stg_inflow_path, stg_inflow_path, sizeof(stg_inflow_path), NULL)); 315*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsString("-stg_rand_path", "Path to STGInflow.dat", NULL, stg_rand_path, stg_rand_path, sizeof(stg_rand_path), NULL)); 316*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsReal("-stg_alpha", "Growth rate of the wavemodes", NULL, alpha, &alpha, NULL)); 317*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsReal("-stg_u0", "Advective velocity for the fluctuations", NULL, u0, &u0, NULL)); 318*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_mean_only", "Only apply mean profile", NULL, mean_only, &mean_only, NULL)); 319*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_strong", "Enforce STG inflow strongly", NULL, use_stgstrong, &use_stgstrong, NULL)); 320*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsBool("-stg_fluctuating_IC", "\"Extrude\" the fluctuations through the domain as an initial condition", NULL, 321*2b916ea7SJeremy L Thompson use_fluctuating_IC, &use_fluctuating_IC, NULL)); 322493642f1SJames Wright PetscOptionsEnd(); 323493642f1SJames Wright 32434b5deb1SJames Wright PetscCall(PetscCalloc1(1, &global_stg_ctx)); 3258085925cSJames Wright global_stg_ctx->alpha = alpha; 3268085925cSJames Wright global_stg_ctx->u0 = u0; 3278085925cSJames Wright global_stg_ctx->is_implicit = user->phys->implicit; 3288085925cSJames Wright global_stg_ctx->prescribe_T = prescribe_T; 3298085925cSJames Wright global_stg_ctx->mean_only = mean_only; 330d4e0f297SJames Wright global_stg_ctx->use_fluctuating_IC = use_fluctuating_IC; 3318085925cSJames Wright global_stg_ctx->theta0 = theta0; 3328085925cSJames Wright global_stg_ctx->P0 = P0; 3338085925cSJames Wright global_stg_ctx->nynodes = nynodes; 334493642f1SJames Wright 335493642f1SJames Wright { 336493642f1SJames Wright // Calculate dx assuming constant spacing 337493642f1SJames Wright PetscReal domain_min[3], domain_max[3], domain_size[3]; 33834b5deb1SJames Wright PetscCall(DMGetBoundingBox(dm, domain_min, domain_max)); 339493642f1SJames Wright for (PetscInt i = 0; i < 3; i++) domain_size[i] = domain_max[i] - domain_min[i]; 340493642f1SJames Wright 341493642f1SJames Wright PetscInt nmax = 3, faces[3]; 342*2b916ea7SJeremy L Thompson PetscCall(PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, &nmax, NULL)); 3438085925cSJames Wright global_stg_ctx->dx = domain_size[0] / faces[0]; 3448085925cSJames Wright global_stg_ctx->dz = domain_size[2] / faces[2]; 345493642f1SJames Wright } 346493642f1SJames Wright 347*2b916ea7SJeremy L Thompson CeedQFunctionContextGetData(problem->apply_vol_rhs.qfunction_context, CEED_MEM_HOST, &newtonian_ig_ctx); 3488085925cSJames Wright global_stg_ctx->newtonian_ctx = *newtonian_ig_ctx; 349*2b916ea7SJeremy L Thompson CeedQFunctionContextRestoreData(problem->apply_vol_rhs.qfunction_context, &newtonian_ig_ctx); 350493642f1SJames Wright 351*2b916ea7SJeremy L Thompson PetscCall(GetSTGContextData(comm, dm, stg_inflow_path, stg_rand_path, &global_stg_ctx, ynodes)); 352493642f1SJames Wright 353493642f1SJames Wright CeedQFunctionContextCreate(user->ceed, &stg_context); 354*2b916ea7SJeremy L Thompson CeedQFunctionContextSetData(stg_context, CEED_MEM_HOST, CEED_USE_POINTER, global_stg_ctx->total_bytes, global_stg_ctx); 355*2b916ea7SJeremy L Thompson CeedQFunctionContextSetDataDestroy(stg_context, CEED_MEM_HOST, FreeContextPetsc); 356*2b916ea7SJeremy L Thompson CeedQFunctionContextRegisterDouble(stg_context, "solution time", offsetof(struct STGShur14Context_, time), 1, "Physical time of the solution"); 357493642f1SJames Wright 35843bff553SJames Wright CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 35943bff553SJames Wright problem->ics.qfunction = ICsSTG; 36043bff553SJames Wright problem->ics.qfunction_loc = ICsSTG_loc; 36143bff553SJames Wright problem->ics.qfunction_context = stg_context; 36243bff553SJames Wright 363e6098bcdSJames Wright if (use_stgstrong) { 3648085925cSJames Wright // Use default boundary integral QF (BoundaryIntegral) in newtonian.h 3656d0190e2SJames Wright problem->use_dirichlet_ceed = PETSC_TRUE; 366d7244455SJames Wright problem->bc_from_ics = PETSC_FALSE; 367e6098bcdSJames Wright } else { 368493642f1SJames Wright problem->apply_inflow.qfunction = STGShur14_Inflow; 369493642f1SJames Wright problem->apply_inflow.qfunction_loc = STGShur14_Inflow_loc; 370a6e8f989SJames Wright problem->apply_inflow_jacobian.qfunction = STGShur14_Inflow_Jacobian; 371a6e8f989SJames Wright problem->apply_inflow_jacobian.qfunction_loc = STGShur14_Inflow_Jacobian_loc; 372*2b916ea7SJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow.qfunction_context); 373*2b916ea7SJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow_jacobian.qfunction_context); 374d7244455SJames Wright problem->bc_from_ics = PETSC_TRUE; 375e6098bcdSJames Wright } 376493642f1SJames Wright 377493642f1SJames Wright PetscFunctionReturn(0); 378493642f1SJames Wright } 379e6098bcdSJames Wright 380*2b916ea7SJeremy L Thompson static inline PetscScalar FindDy(const PetscScalar ynodes[], const PetscInt nynodes, const PetscScalar y) { 381e6098bcdSJames Wright const PetscScalar half_mindy = 0.5 * (ynodes[1] - ynodes[0]); 382e6098bcdSJames Wright // ^^assuming min(dy) is first element off the wall 383e6098bcdSJames Wright PetscInt idx = -1; // Index 384e6098bcdSJames Wright 385e6098bcdSJames Wright for (PetscInt i = 0; i < nynodes; i++) { 386e6098bcdSJames Wright if (y < ynodes[i] + half_mindy) { 387*2b916ea7SJeremy L Thompson idx = i; 388*2b916ea7SJeremy L Thompson break; 389e6098bcdSJames Wright } 390e6098bcdSJames Wright } 391e6098bcdSJames Wright if (idx == 0) return ynodes[1] - ynodes[0]; 392e6098bcdSJames Wright else if (idx == nynodes - 1) return ynodes[nynodes - 2] - ynodes[nynodes - 1]; 393e6098bcdSJames Wright else return 0.5 * (ynodes[idx + 1] - ynodes[idx - 1]); 394e6098bcdSJames Wright } 395e6098bcdSJames Wright 396e6098bcdSJames Wright // Function passed to DMAddBoundary 3976d0190e2SJames Wright // NOTE: Not used in favor of QFunction-based method 398*2b916ea7SJeremy L Thompson PetscErrorCode StrongSTGbcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[], void *ctx) { 399e6098bcdSJames Wright PetscFunctionBeginUser; 400*2b916ea7SJeremy L Thompson 401e6098bcdSJames Wright const STGShur14Context stg_ctx = (STGShur14Context)ctx; 402e6098bcdSJames Wright PetscScalar qn[stg_ctx->nmodes], u[3], ubar[3], cij[6], eps, lt; 403e6098bcdSJames Wright const bool mean_only = stg_ctx->mean_only; 404e6098bcdSJames Wright const PetscScalar dx = stg_ctx->dx; 405e6098bcdSJames Wright const PetscScalar dz = stg_ctx->dz; 406e6098bcdSJames Wright const PetscScalar mu = stg_ctx->newtonian_ctx.mu; 407e6098bcdSJames Wright const PetscScalar theta0 = stg_ctx->theta0; 408e6098bcdSJames Wright const PetscScalar P0 = stg_ctx->P0; 409e6098bcdSJames Wright const PetscScalar cv = stg_ctx->newtonian_ctx.cv; 410e6098bcdSJames Wright const PetscScalar cp = stg_ctx->newtonian_ctx.cp; 411e6098bcdSJames Wright const PetscScalar Rd = cp - cv; 412e6098bcdSJames Wright 413e6098bcdSJames Wright const CeedScalar rho = P0 / (Rd * theta0); 414e6098bcdSJames Wright InterpolateProfile(x[1], ubar, cij, &eps, <, stg_ctx); 415e6098bcdSJames Wright if (!mean_only) { 416e6098bcdSJames Wright const PetscInt nynodes = stg_ctx->nynodes; 417e6098bcdSJames Wright const PetscScalar *ynodes = &stg_ctx->data[stg_ctx->offsets.ynodes]; 418e6098bcdSJames Wright const PetscScalar h[3] = {dx, FindDy(ynodes, nynodes, x[1]), dz}; 419e6098bcdSJames Wright CalcSpectrum(x[1], eps, lt, h, mu / rho, qn, stg_ctx); 420e6098bcdSJames Wright STGShur14_Calc(x, time, ubar, cij, qn, u, stg_ctx); 421e6098bcdSJames Wright } else { 422e6098bcdSJames Wright for (CeedInt j = 0; j < 3; j++) u[j] = ubar[j]; 423e6098bcdSJames Wright } 424e6098bcdSJames Wright 425e6098bcdSJames Wright bcval[0] = rho; 426e6098bcdSJames Wright bcval[1] = rho * u[0]; 427e6098bcdSJames Wright bcval[2] = rho * u[1]; 428e6098bcdSJames Wright bcval[3] = rho * u[2]; 429e6098bcdSJames Wright PetscFunctionReturn(0); 430e6098bcdSJames Wright } 431e6098bcdSJames Wright 432*2b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG(DM dm, SimpleBC bc, ProblemData *problem, Physics phys) { 433e6098bcdSJames Wright DMLabel label; 434e6098bcdSJames Wright PetscFunctionBeginUser; 435e6098bcdSJames Wright 436d374fb47SJames Wright PetscInt comps[5], num_comps = 4; 4373636f6a4SJames Wright switch (phys->state_var) { 4383636f6a4SJames Wright case STATEVAR_CONSERVATIVE: 439d374fb47SJames Wright // {0,1,2,3} for rho, rho*u, rho*v, rho*w 440d374fb47SJames Wright for (int i = 0; i < 4; i++) comps[i] = i; 4413636f6a4SJames Wright break; 4423636f6a4SJames Wright 4433636f6a4SJames Wright case STATEVAR_PRIMITIVE: 4443636f6a4SJames Wright // {1,2,3,4} for u, v, w, T 4453636f6a4SJames Wright for (int i = 0; i < 4; i++) comps[i] = i + 1; 4463636f6a4SJames Wright break; 447d374fb47SJames Wright } 448d374fb47SJames Wright 44934b5deb1SJames Wright PetscCall(DMGetLabel(dm, "Face Sets", &label)); 450e6098bcdSJames Wright // Set wall BCs 451e6098bcdSJames Wright if (bc->num_inflow > 0) { 452*2b916ea7SJeremy L Thompson PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "STG", label, bc->num_inflow, bc->inflows, 0, num_comps, comps, (void (*)(void))StrongSTGbcFunc, 45334b5deb1SJames Wright NULL, global_stg_ctx, NULL)); 454e6098bcdSJames Wright } 455e6098bcdSJames Wright 456e6098bcdSJames Wright PetscFunctionReturn(0); 457e6098bcdSJames Wright } 4586d0190e2SJames Wright 459*2b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG_QF(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt num_comp_q, CeedInt stg_data_size, 4609eeef72bSJames Wright CeedInt q_data_size_sur, CeedQFunction *pqf_strongbc) { 4616d0190e2SJames Wright CeedQFunction qf_strongbc; 4626d0190e2SJames Wright PetscFunctionBeginUser; 463*2b916ea7SJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, STGShur14_Inflow_StrongQF, STGShur14_Inflow_StrongQF_loc, &qf_strongbc); 464*2b916ea7SJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4656d0190e2SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4666d0190e2SJames Wright CeedQFunctionAddInput(qf_strongbc, "scale", 1, CEED_EVAL_NONE); 4679eeef72bSJames Wright CeedQFunctionAddInput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4686d0190e2SJames Wright CeedQFunctionAddOutput(qf_strongbc, "q", num_comp_q, CEED_EVAL_NONE); 4696d0190e2SJames Wright 4706d0190e2SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4716d0190e2SJames Wright *pqf_strongbc = qf_strongbc; 4726d0190e2SJames Wright PetscFunctionReturn(0); 4736d0190e2SJames Wright } 4749eeef72bSJames Wright 475*2b916ea7SJeremy L Thompson PetscErrorCode SetupStrongSTG_PreProcessing(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt stg_data_size, CeedInt q_data_size_sur, 4769eeef72bSJames Wright CeedQFunction *pqf_strongbc) { 4779eeef72bSJames Wright CeedQFunction qf_strongbc; 4789eeef72bSJames Wright PetscFunctionBeginUser; 479*2b916ea7SJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, Preprocess_STGShur14, Preprocess_STGShur14_loc, &qf_strongbc); 480*2b916ea7SJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4819eeef72bSJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4829eeef72bSJames Wright CeedQFunctionAddOutput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4839eeef72bSJames Wright 4849eeef72bSJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4859eeef72bSJames Wright *pqf_strongbc = qf_strongbc; 4869eeef72bSJames Wright PetscFunctionReturn(0); 4879eeef72bSJames Wright } 488